BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645016|ref|NP_207186.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(243 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IM8|A Chain A, Crystal Structure Of Yeco From Haemophi... 145 3e-36
pdb|1DMU|A Chain A, Crystal Structure Of The Restriction En... 26 3.6
pdb|1RFB|A Chain A, Interferon Gamma (Bovine, Recombinant) ... 25 8.1
pdb|1D9C|A Chain A, Bovine Interferon-Gamma At 2.0 Angstrom... 25 8.1
>pdb|1IM8|A Chain A, Crystal Structure Of Yeco From Haemophilus Influenzae
(Hi0319), A Methyltransferase With A Bound S-
Adenosylhomocysteine
pdb|1IM8|B Chain B, Crystal Structure Of Yeco From Haemophilus Influenzae
(Hi0319), A Methyltransferase With A Bound S-
Adenosylhomocysteine
Length = 244
Score = 145 bits (367), Expect = 3e-36
Identities = 91/252 (36%), Positives = 137/252 (54%), Gaps = 22/252 (8%)
Query: 1 MKDTLFNESLNKR--FCFDEKVAHVFDDMLERSIPYYHEMLN----LGAYFIAQNLKENI 54
+KDTLF+ + K F FDE VA VF D ++RS+P Y ++ L F+ +
Sbjct: 5 VKDTLFSTPIAKLGDFIFDENVAEVFPDXIQRSVPGYSNIITAIGXLAERFVTADSN--- 61
Query: 55 YPKSLPKPLIYDLGCSTGNFFIALNRQIQQ-EIELVGIDNSMPMLKKAQEKLKDFNN--- 110
+YDLGCS G ++ R I Q ++++GIDNS P +++ ++ + +++
Sbjct: 62 ---------VYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPXVERCRQHIAAYHSEIP 112
Query: 111 ARFECMDFLEVEFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSED 170
C D VE K AS L F LQF+ P R LL KIY L NGVL++ EK ED
Sbjct: 113 VEILCNDIRHVEIKNASXVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFED 172
Query: 171 RILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENVALLESVGFKHVEALF 230
++ +I+L++ +K+ GYS E++ KR ALENV S++ + L++VGF VE F
Sbjct: 173 TKINHLLIDLHHQFKRANGYSELEVSQKRTALENVXRTDSIETHKVRLKNVGFSQVELWF 232
Query: 231 KWVNFTLLVARK 242
+ NF +A K
Sbjct: 233 QCFNFGSXIAVK 244
>pdb|1DMU|A Chain A, Crystal Structure Of The Restriction Endonuclease Bgli
(E.C.3.1.21.4) Bound To Its Dna Recognition Sequence
Length = 299
Score = 26.2 bits (56), Expect = 3.6
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 79 NRQIQQEIELVGIDNSMPMLKKAQEKLK-DFNNARF 113
N +IQ++IEL G++ ++ +E+++ D+N A F
Sbjct: 23 NPEIQEKIELYGLNLLNEVISDNEEEIRADYNEANF 58
>pdb|1RFB|A Chain A, Interferon Gamma (Bovine, Recombinant)
pdb|1RFB|B Chain B, Interferon Gamma (Bovine, Recombinant)
Length = 119
Score = 25.0 bits (53), Expect = 8.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 79 NRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNARFECMDFLEVEFK 124
N+ IQ+ ++++ D L + EKL+DF +D L+++ K
Sbjct: 63 NQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRK 108
>pdb|1D9C|A Chain A, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9G|A Chain A, Bovine Interferon-Gamma At 2.9 Angstroms
pdb|1D9C|B Chain B, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9G|B Chain B, Bovine Interferon-Gamma At 2.9 Angstroms
Length = 121
Score = 25.0 bits (53), Expect = 8.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 79 NRQIQQEIELVGIDNSMPMLKKAQEKLKDFNNARFECMDFLEVEFK 124
N+ IQ+ ++++ D L + EKL+DF +D L+++ K
Sbjct: 63 NQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRK 108
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.140 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,256,634
Number of Sequences: 13198
Number of extensions: 48266
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 4
length of query: 243
length of database: 2,899,336
effective HSP length: 86
effective length of query: 157
effective length of database: 1,764,308
effective search space: 276996356
effective search space used: 276996356
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)