BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645017|ref|NP_207187.1| superoxide dismutase (sodB)
[Helicobacter pylori 26695]
(213 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ISC|A Chain A, Iron(Iii) Superoxide Dismutase (E.C.1.1... 212 2e-56
pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic... 196 1e-51
pdb|3SDP|A Chain A, Iron Superoxide Dismutase (E.C.1.15.1.1... 186 2e-48
pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From ... 165 3e-42
pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Co... 140 1e-34
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 1... 140 1e-34
pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Co... 140 1e-34
pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Co... 139 3e-34
pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Mangan... 139 3e-34
pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a ... 136 2e-33
pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxi... 135 5e-33
pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dism... 124 8e-30
pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manga... 123 2e-29
pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn... 123 2e-29
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Ami... 123 2e-29
pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure O... 122 3e-29
pdb|1MA1|A Chain A, Structure And Properties Of The Atypica... 122 4e-29
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondria... 121 5e-29
pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mu... 121 7e-29
pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Ami... 120 2e-28
pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Ami... 119 3e-28
pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition ... 117 8e-28
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8 >gi|5542... 114 8e-27
pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumiga... 111 6e-26
pdb|1MNG|A Chain A, Manganese Superoxide Dismutase (E.C.1.1... 110 9e-26
pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculo... 107 1e-24
pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculo... 107 1e-24
pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculo... 107 1e-24
pdb|1IDS|A Chain A, Iron-Dependent Superoxide Dismutase (E.... 106 2e-24
pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dis... 104 7e-24
pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Ac... 94 9e-21
pdb|1SSS|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From... 91 1e-19
pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyper... 74 1e-14
pdb|1M4Z|A Chain A, Crystal Structure Of The N-Terminal Bah... 28 0.61
pdb|1DRZ|A Chain A, U1a Spliceosomal ProteinHEPATITIS DELTA... 26 4.0
pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures 26 4.0
pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protea... 26 4.0
pdb|1FHT| Rna-Binding Domain Of The U1a Spliceosomal Prot... 26 4.0
pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melan... 26 4.0
pdb|1CX0|A Chain A, Hepatitis Delta Virus Ribozyme 26 4.0
pdb|1NRC|A Chain A, Protein From U1 Small Nuclear Ribonucle... 26 4.0
pdb|1URN|A Chain A, U1aRNA COMPLEX >gi|1431701|pdb|1URN|B C... 26 4.0
pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme... 26 4.0
pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Prot... 26 4.0
pdb|1CEN| Cellulase (Celc) Mutant With Glu 140 Replaced B... 25 6.8
pdb|1CEC| Glycosyl Hydrolase, Cellulase, Family A5 OF Cel... 25 6.8
>pdb|1ISC|A Chain A, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1) Complexed
With Azide
pdb|1ISC|B Chain B, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1) Complexed
With Azide
pdb|1ISA|A Chain A, Iron(Ii) Superoxide Dismutase (E.C.1.15.1.1)
pdb|1ISA|B Chain B, Iron(Ii) Superoxide Dismutase (E.C.1.15.1.1)
pdb|1ISB|A Chain A, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1)
pdb|1ISB|B Chain B, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1)
Length = 192
Score = 212 bits (540), Expect = 2e-56
Identities = 101/188 (53%), Positives = 129/188 (67%), Gaps = 2/188 (1%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSSG 61
F L LP+AKD++ +S ++H+GKHHQTYV NLNNLIKGT FE SL +I+ S G
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEG 61
Query: 62 GVFNNAAQIYNHDFYWDCLSPKATA-LSDELKGALEKDFGSLEQFKEDFIKSATTLFGSG 120
GVFNNAAQ++NH FYW+CL+P A + ++ A+ FGS FK F +A FGSG
Sbjct: 62 GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSG 121
Query: 121 WNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYEH 180
W W+ N D K+ I+ TSNA TP+T PLL VDVWEHAYYID++NARP YLE F+
Sbjct: 122 WTWLVKNSD-GKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWAL 180
Query: 181 INWHFVSQ 188
+NW FV++
Sbjct: 181 VNWEFVAK 188
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 196 bits (499), Expect = 1e-51
Identities = 92/191 (48%), Positives = 125/191 (65%), Gaps = 2/191 (1%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSSG 61
F L LP+A D++ +S +FHH KHH TYV NLNNL+ GT+FE +L +I+ SSG
Sbjct: 2 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKTSSG 61
Query: 62 GVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSATTLFGSG 120
G+FNNAAQ++NH FYW+CLSP A + L A+ FGS ++FKE+F K++ FGSG
Sbjct: 62 GIFNNAAQVWNHTFYWNCLSPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSG 121
Query: 121 WNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYEH 180
W W+ D + + T A P+T PLL DVWEHAYYID++N RP Y+E F+
Sbjct: 122 WGWLVKKAD-GSLALASTIGAGCPLTIGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWNL 180
Query: 181 INWHFVSQCYE 191
+NW FV++ +E
Sbjct: 181 VNWAFVAEQFE 191
>pdb|3SDP|A Chain A, Iron Superoxide Dismutase (E.C.1.15.1.1)
pdb|3SDP|B Chain B, Iron Superoxide Dismutase (E.C.1.15.1.1)
Length = 195
Score = 186 bits (472), Expect = 2e-48
Identities = 89/189 (47%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGT-DFEKSSLFDILTKSS 60
F L LP+A D++ +S ++HH KHH TYV NLNNL+ GT +FE +L +I+ SS
Sbjct: 2 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTPEFEGKTLEEIVKSSS 61
Query: 61 GGVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSATTLFGS 119
GG+FNNAAQ++NH FYW+CLSP A + L A+ FGS ++FKE+F K++ FGS
Sbjct: 62 GGIFNNAAQVWNHTFYWNCLSPDAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGS 121
Query: 120 GWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYE 179
GW W+ + + T A P+T PLL DVWEHAYYID++N RP Y+E F+
Sbjct: 122 GWAWLVKA--DGSLALCSTIGAGAPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN 179
Query: 180 HINWHFVSQ 188
+NW FV++
Sbjct: 180 LVNWAFVAE 188
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
Length = 191
Score = 165 bits (418), Expect = 3e-42
Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 4 LRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSSGGV 63
L LP+A D++ +S +FHHGKH +TYV+NLN LI GT+FE + L I+ KS GG+
Sbjct: 5 LISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLNTIVQKSEGGI 64
Query: 64 FNNAAQIYNHDFYWDCLSP-KATALSDELKGALEKDFGSLEQFKEDFIKSATTLFGSGWN 122
FNNA Q NH+ Y+ P K A +L A++K FGS E+FKE+F + TTLFGSGW
Sbjct: 65 FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWV 124
Query: 123 WVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYEHIN 182
W+A + + K+ I + NA PV PLL DVWEHAYY+ ++N R +L+ + ++
Sbjct: 125 WLASDAN-GKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRRADHLKDLWSIVD 183
Query: 183 WHFVSQCY 190
W V Y
Sbjct: 184 WDIVESRY 191
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 140 bits (353), Expect = 1e-34
Identities = 71/196 (36%), Positives = 112/196 (56%), Gaps = 17/196 (8%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGT-DFEKSSLFDILTK-- 58
+TL LP+A D++ + HH KHHQTYVNN N ++ +F + +++TK
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 59 -----SSGGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEQFKEDFIKSA 113
+ NNA NH +W L K T L +LK A+E+DFGS++ FK +F K+A
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLK-KGTTLQGDLKAAIERDFGSVDNFKAEFEKAA 120
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKV------PLLVVDVWEHAYYIDHK 167
+ FGSGW W+ L K+ ++ T+N +P+ + + P++ +DVWEHAYY+ +
Sbjct: 121 ASRFGSGWAWLV--LKGDKLAVVSTANLDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQ 178
Query: 168 NARPVYLEKFYEHINW 183
N RP Y+++F+ +NW
Sbjct: 179 NRRPDYIKEFWNVVNW 194
>pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
Length = 205
Score = 140 bits (353), Expect = 1e-34
Identities = 71/196 (36%), Positives = 112/196 (56%), Gaps = 17/196 (8%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGT-DFEKSSLFDILTK-- 58
+TL LP+A D++ + HH KHHQTYVNN N ++ +F + +++TK
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 59 -----SSGGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEQFKEDFIKSA 113
+ NNA NH +W L K T L +LK A+E+DFGS++ FK +F K+A
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLK-KGTTLQGDLKAAIERDFGSVDNFKAEFEKAA 120
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKV------PLLVVDVWEHAYYIDHK 167
+ FGSGW W+ L K+ ++ T+N +P+ + + P++ +DVWEHAYY+ +
Sbjct: 121 ASRFGSGWAWLV--LKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQ 178
Query: 168 NARPVYLEKFYEHINW 183
N RP Y+++F+ +NW
Sbjct: 179 NRRPDYIKEFWNVVNW 194
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 140 bits (352), Expect = 1e-34
Identities = 71/196 (36%), Positives = 112/196 (56%), Gaps = 17/196 (8%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGT-DFEKSSLFDILTK-- 58
+TL LP+A D++ + HH KHHQTYVNN N ++ +F + +++TK
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 59 -----SSGGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEQFKEDFIKSA 113
+ NNA NH +W L K T L +LK A+E+DFGS++ FK +F K+A
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLK-KGTTLQGDLKAAIERDFGSVDNFKAEFEKAA 120
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKV------PLLVVDVWEHAYYIDHK 167
+ FGSGW W+ L K+ ++ T+N +P+ + + P++ +DVWEHAYY+ +
Sbjct: 121 ASRFGSGWAWLV--LKGDKLAVVSTANHDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQ 178
Query: 168 NARPVYLEKFYEHINW 183
N RP Y+++F+ +NW
Sbjct: 179 NRRPDYIKEFWNVVNW 194
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 139 bits (349), Expect = 3e-34
Identities = 70/196 (35%), Positives = 112/196 (56%), Gaps = 17/196 (8%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGT-DFEKSSLFDILTK-- 58
+TL LP+A D++ + HH KHHQT+VNN N ++ +F + +++TK
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTFVNNANAALESLPEFANLPVEELITKLD 61
Query: 59 -----SSGGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEQFKEDFIKSA 113
+ NNA NH +W L K T L +LK A+E+DFGS++ FK +F K+A
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLK-KGTTLQGDLKAAIERDFGSVDNFKAEFEKAA 120
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKV------PLLVVDVWEHAYYIDHK 167
+ FGSGW W+ L K+ ++ T+N +P+ + + P++ +DVWEHAYY+ +
Sbjct: 121 ASRFGSGWAWLV--LKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQ 178
Query: 168 NARPVYLEKFYEHINW 183
N RP Y+++F+ +NW
Sbjct: 179 NRRPDYIKEFWNVVNW 194
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution
Length = 205
Score = 139 bits (349), Expect = 3e-34
Identities = 70/196 (35%), Positives = 112/196 (56%), Gaps = 17/196 (8%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGT-DFEKSSLFDILTK-- 58
+TL LP+A D++ + HH KHHQTYVNN N ++ +F + +++TK
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 59 -----SSGGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEQFKEDFIKSA 113
+ NNA NH +W L K T L +LK A+E+DFGS++ FK +F K+A
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLK-KGTTLQGDLKAAIERDFGSVDNFKAEFEKAA 120
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKV------PLLVVDVWEHAYYIDHK 167
+ FGSGW W+ L K+ ++ T+N +P+ + + P++ +DVWEHAY++ +
Sbjct: 121 ASRFGSGWAWLV--LKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYFLKFQ 178
Query: 168 NARPVYLEKFYEHINW 183
N RP Y+++F+ +NW
Sbjct: 179 NRRPDYIKEFWNVVNW 194
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 136 bits (343), Expect = 2e-33
Identities = 70/196 (35%), Positives = 111/196 (55%), Gaps = 17/196 (8%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGT-DFEKSSLFDILTK-- 58
+TL LP+A D++ + HH K HQTYVNN N ++ +F + +++TK
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKAHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 59 -----SSGGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEQFKEDFIKSA 113
+ NNA NH +W L K T L +LK A+E+DFGS++ FK +F K+A
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLK-KGTTLQGDLKAAIERDFGSVDNFKAEFEKAA 120
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKV------PLLVVDVWEHAYYIDHK 167
+ FGSGW W+ L K+ ++ T+N +P+ + + P++ +DVWEHAYY+ +
Sbjct: 121 ASRFGSGWAWLV--LKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQ 178
Query: 168 NARPVYLEKFYEHINW 183
N RP Y+++F+ +NW
Sbjct: 179 NRRPDYIKEFWNVVNW 194
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 135 bits (339), Expect = 5e-33
Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 11/201 (5%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKG-TDFEKSSLFDILTKSS 60
F L ELP+A D++ + + HH KHH TYV LN ++G D + SL D+++
Sbjct: 3 FELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNGALEGHEDLKNKSLNDLISNLD 62
Query: 61 G-------GVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKS 112
V NN NH +W +SP + E+ + +GS E+F+E+F +
Sbjct: 63 AVPENIRTAVRNNGGGHANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQEEFAAA 122
Query: 113 ATTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPV 172
A FGSGW W+ N +IEI+ T P+ + K P+L +DVWEHAYY+ ++N RP
Sbjct: 123 AAGRFGSGWAWLVVN--NGEIEIMSTPIQDNPLMEGKKPILGLDVWEHAYYLKYQNKRPD 180
Query: 173 YLEKFYEHINWHFVSQCYEWA 193
Y+ F+ +NW V+ Y A
Sbjct: 181 YISAFWNVVNWDEVAAQYSQA 201
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 124 bits (311), Expect = 8e-30
Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 19/204 (9%)
Query: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLN--------NLIKGTDFEKSSLFD 54
+L +LP+ ++ ++ HH KHH YVNNLN L KG +++L
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQTALQP 62
Query: 55 ILTKSSGGVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSA 113
L + GG N H +W LSP EL A+++DFGS ++FKE ++
Sbjct: 63 ALKFNGGGHIN-------HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPV--TDKKVPLLVVDVWEHAYYIDHKNARP 171
+ GSGW W+ +N + ++I N Q P+ T +PLL +DVWEHAYY+ +KN RP
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN-QDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRP 174
Query: 172 VYLEKFYEHINWHFVSQCYEWAKK 195
YL+ + INW V++ Y KK
Sbjct: 175 DYLKAIWNVINWENVTERYMACKK 198
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 123 bits (308), Expect = 2e-29
Identities = 71/203 (34%), Positives = 103/203 (49%), Gaps = 17/203 (8%)
Query: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLN--------NLIKGTDFEKSSLFD 54
+L +LP+ ++ ++ HH KHH YVNNLN L KG + +L
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQP 62
Query: 55 ILTKSSGGVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSA 113
L + GG N H +W LSP EL A+++DFGS ++FKE ++
Sbjct: 63 ALKFNGGGHIN-------HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQT-PVTDKKVPLLVVDVWEHAYYIDHKNARPV 172
+ GSGW W+ +N + ++I NA T +PLL +DVWEHAYY+ +KN RP
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPNADPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPD 175
Query: 173 YLEKFYEHINWHFVSQCYEWAKK 195
YL+ + INW V++ Y KK
Sbjct: 176 YLKAIWNVINWENVTERYMACKK 198
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two 4-
Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two 4-
Helix Bundles
Length = 199
Score = 123 bits (308), Expect = 2e-29
Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 19/204 (9%)
Query: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLN--------NLIKGTDFEKSSLFD 54
+L +LP+ ++ ++ HH KHH YVNNLN L KG + +L
Sbjct: 4 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQP 63
Query: 55 ILTKSSGGVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSA 113
L + GG N H +W LSP EL A+++DFGS ++FKE ++
Sbjct: 64 ALKFNGGGHIN-------HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 116
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPV--TDKKVPLLVVDVWEHAYYIDHKNARP 171
+ GSGW W+ +N + ++I N Q P+ T +PLL +DVWEHAYY+ +KN RP
Sbjct: 117 VGVQGSGWGWLGFNKERGHLQIAACPN-QDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRP 175
Query: 172 VYLEKFYEHINWHFVSQCYEWAKK 195
YL+ + INW V++ Y KK
Sbjct: 176 DYLKAIWNVINWENVTERYMACKK 199
>pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1MSD|A Chain A, Manganese Superoxide Dismutase (E.C.1.15.1.1)
pdb|1MSD|B Chain B, Manganese Superoxide Dismutase (E.C.1.15.1.1)
Length = 198
Score = 123 bits (308), Expect = 2e-29
Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 19/204 (9%)
Query: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLN--------NLIKGTDFEKSSLFD 54
+L +LP+ ++ ++ HH KHH YVNNLN L KG + +L
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQP 62
Query: 55 ILTKSSGGVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSA 113
L + GG N H +W LSP EL A+++DFGS ++FKE ++
Sbjct: 63 ALKFNGGGHIN-------HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPV--TDKKVPLLVVDVWEHAYYIDHKNARP 171
+ GSGW W+ +N + ++I N Q P+ T +PLL +DVWEHAYY+ +KN RP
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN-QDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRP 174
Query: 172 VYLEKFYEHINWHFVSQCYEWAKK 195
YL+ + INW V++ Y KK
Sbjct: 175 DYLKAIWNVINWENVTERYMACKK 198
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 122 bits (306), Expect = 3e-29
Identities = 61/194 (31%), Positives = 99/194 (50%), Gaps = 10/194 (5%)
Query: 4 LRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSSGGV 63
L LP+ D++ + HH KHH YVNNLNN +K ++S + L + V
Sbjct: 40 LPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNSV 99
Query: 64 --------FNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSAT 114
NN NH +W +SP + ++ + + FGS E+FK+ F ++
Sbjct: 100 PEDIRTTVRNNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGG 159
Query: 115 TLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYL 174
FGSGW W+ N Q ++++ T N P+ + P++ DVWEHAYY+ ++N RP YL
Sbjct: 160 DRFGSGWVWLVRNPQGQ-LQVVSTPNQDNPIMEGSYPIMGNDVWEHAYYLRYQNRRPEYL 218
Query: 175 EKFYEHINWHFVSQ 188
++ +NW +++
Sbjct: 219 NNWWNVVNWSEINR 232
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|B Chain B, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|C Chain C, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|D Chain D, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|E Chain E, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|F Chain F, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
Length = 205
Score = 122 bits (305), Expect = 4e-29
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 4/194 (2%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSSG 61
+ L ELP+ D++ +S HH KHHQ YV+ N L++ D + S D+ K++
Sbjct: 9 YELPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEARESDTDVDIKAAL 68
Query: 62 GVFN-NAAQIYNHDFYWDCLSPKATA---LSDELKGALEKDFGSLEQFKEDFIKSATTLF 117
+ + H F+W + P S +L +EKDFGS E+F+++F ++A +
Sbjct: 69 KELSFHVGGYVLHLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRKEFSQAAISAE 128
Query: 118 GSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKF 177
GSGW + Y T ++ I+Q V LLV+DVWEHAYYID++N RP Y+E F
Sbjct: 129 GSGWAVLTYCQRTDRLFIMQVEKHNVNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVEAF 188
Query: 178 YEHINWHFVSQCYE 191
+ +NW V + +E
Sbjct: 189 WNIVNWKEVEKRFE 202
>pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 121 bits (304), Expect = 5e-29
Identities = 71/204 (34%), Positives = 105/204 (50%), Gaps = 19/204 (9%)
Query: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLN--------NLIKGTDFEKSSLFD 54
+L +LP+ ++ ++ HH KHH +VNNLN L KG + +L
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAFVNNLNVTEEKYQEALAKGDVTAQIALQP 62
Query: 55 ILTKSSGGVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSA 113
L + GG N H +W LSP EL A+++DFGS ++FKE ++
Sbjct: 63 ALKFNGGGHIN-------HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPV--TDKKVPLLVVDVWEHAYYIDHKNARP 171
+ GSGW W+ +N + ++I N Q P+ T +PLL +DVWEHAYY+ +KN RP
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN-QDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRP 174
Query: 172 VYLEKFYEHINWHFVSQCYEWAKK 195
YL+ + INW V++ Y KK
Sbjct: 175 DYLKAIWNVINWENVTERYMACKK 198
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 121 bits (303), Expect = 7e-29
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 19/204 (9%)
Query: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLN--------NLIKGTDFEKSSLFD 54
+L +LP+ ++ ++ HH KHH YVNNLN L KG + +L
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQP 62
Query: 55 ILTKSSGGVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSA 113
L + GG N H +W LSP EL A+++DFGS ++FKE ++
Sbjct: 63 ALKFNGGGHIN-------HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPV--TDKKVPLLVVDVWEHAYYIDHKNARP 171
+ GSGW W+ +N + ++I N P+ T +PLL +DVWEHAYY+ +KN RP
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN-NDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRP 174
Query: 172 VYLEKFYEHINWHFVSQCYEWAKK 195
YL+ + INW V++ Y KK
Sbjct: 175 DYLKAIWNVINWENVTERYMACKK 198
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 120 bits (300), Expect = 2e-28
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 19/204 (9%)
Query: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLN--------NLIKGTDFEKSSLFD 54
+L +LP+ ++ ++ HH K H YVNNLN L KG + +L
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKQHAAYVNNLNVTEEKYQEALAKGDVTAQIALQP 62
Query: 55 ILTKSSGGVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSA 113
L + GG N H +W LSP EL A+++DFGS ++FKE ++
Sbjct: 63 ALKFNGGGHIN-------HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPV--TDKKVPLLVVDVWEHAYYIDHKNARP 171
+ GSGW W+ +N + ++I N Q P+ T +PLL +DVWEHAYY+ +KN RP
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN-QDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRP 174
Query: 172 VYLEKFYEHINWHFVSQCYEWAKK 195
YL+ + INW V++ Y KK
Sbjct: 175 DYLKAIWNVINWENVTERYMACKK 198
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 119 bits (297), Expect = 3e-28
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 19/204 (9%)
Query: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLN--------NLIKGTDFEKSSLFD 54
+L +LP+ ++ ++ HH K H YVNNLN L KG + +L
Sbjct: 4 SLPDLPYDYGALEPHINAQIMQLHHSKVHAAYVNNLNVTEEKYQEALAKGDVTAQIALQP 63
Query: 55 ILTKSSGGVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSA 113
L + GG N H +W LSP EL A+++DFGS ++FKE ++
Sbjct: 64 ALKFNGGGHIN-------HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 116
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPV--TDKKVPLLVVDVWEHAYYIDHKNARP 171
+ GSGW W+ +N + ++I N Q P+ T +PLL +DVWEHAYY+ +KN RP
Sbjct: 117 VGVQGSGWGWLGFNKERGHLQIAACPN-QDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRP 175
Query: 172 VYLEKFYEHINWHFVSQCYEWAKK 195
YL+ + INW V++ Y KK
Sbjct: 176 DYLKAIWNVINWENVTERYMACKK 199
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 117 bits (294), Expect = 8e-28
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 19/204 (9%)
Query: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLN--------NLIKGTDFEKSSLFD 54
+L +LP+ ++ ++ HH KHH YVNNLN L KG + +L
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQP 62
Query: 55 ILTKSSGGVFNNAAQIYNHDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSA 113
L + GG N H +W LSP EL A+++DFGS ++FKE ++
Sbjct: 63 ALKFNGGGHIN-------HSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 114 TTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPV--TDKKVPLLVVDVWEHAYYIDHKNARP 171
+ GSGW W+ +N + ++I N Q P+ T +PLL +DV EHAYY+ +KN RP
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN-QDPLQGTTGLIPLLGIDVAEHAYYLQYKNVRP 174
Query: 172 VYLEKFYEHINWHFVSQCYEWAKK 195
YL+ + INW V++ Y KK
Sbjct: 175 DYLKAIWNVINWENVTERYMACKK 198
>pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
Length = 201
Score = 114 bits (285), Expect = 8e-27
Identities = 59/198 (29%), Positives = 108/198 (53%), Gaps = 4/198 (2%)
Query: 1 MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLI-KGTDFEKSSLFDILTKS 59
++TL ELP+ ++ ++S + HH KHH+ YV+ N + K + + F + K
Sbjct: 2 VYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKADFGAINKL 61
Query: 60 SGGVFNNAAQIYNHDFYWDCLSPKATAL---SDELKGALEKDFGSLEQFKEDFIKSATTL 116
+ N A NH +W ++PK +A +DEL A+++ FGS + K F +AT +
Sbjct: 62 EKDLAFNLAGHVNHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGI 121
Query: 117 FGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEK 176
GSGW + ++ ++I +Q + Q + +PLL +D+WEHA+Y+ +KN + Y++
Sbjct: 122 QGSGWASLVWDPLGKRINTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGDYVKS 181
Query: 177 FYEHINWHFVSQCYEWAK 194
++ +NW V+ + A+
Sbjct: 182 WWNVVNWDDVALRFSEAR 199
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 111 bits (278), Expect = 6e-26
Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 10/203 (4%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTD--FEKSSLFDILTKS 59
+TL LP+ D++ ++S + HH KHHQTYVN LN ++ E + + +++
Sbjct: 16 YTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEATDVPKLVSVQ 75
Query: 60 SGGVFNNAAQIYNHDFYWDCLSPKATA-----LSDELKGALEKDFGSLEQFKEDFIKSAT 114
FN I NH +W L+P+ + + LK A+E+ +GS ++FK+ F +
Sbjct: 76 QAIKFNGGGHI-NHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNTTLL 134
Query: 115 TLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYL 174
+ GSGW W+ + K++ I T++ Q PVT P+ VD+WEHAYY+ + N + Y
Sbjct: 135 GIQGSGWGWLVTDGPKGKLD-ITTTHDQDPVTG-AAPVFGVDMWEHAYYLQYLNDKASYA 192
Query: 175 EKFYEHINWHFVSQCYEWAKKEG 197
+ + INW Y K G
Sbjct: 193 KGIWNVINWAEAENRYIAGDKGG 215
>pdb|1MNG|A Chain A, Manganese Superoxide Dismutase (E.C.1.15.1.1) Complexed
With Azide
pdb|1MNG|B Chain B, Manganese Superoxide Dismutase (E.C.1.15.1.1) Complexed
With Azide
pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
Length = 203
Score = 110 bits (276), Expect = 9e-26
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 10/201 (4%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILTKSSG 61
F L +L + +++ + + HH KHH YV NLN ++ + ++L +
Sbjct: 4 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLA 63
Query: 62 G--------VFNNAAQIYNHDFYWDCLSPK-ATALSDELKGALEKDFGSLEQFKEDFIKS 112
V NN NH +W L+P A ELK A+++ FG + KE ++
Sbjct: 64 ALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQA 123
Query: 113 ATTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPV 172
A FGSGW W+ + K+ ++ T N PV + P++ +DVWEHAYY+ ++N R
Sbjct: 124 AMGRFGSGWAWLVKD-PFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRAD 182
Query: 173 YLEKFYEHINWHFVSQCYEWA 193
YL+ + +NW + ++ A
Sbjct: 183 YLQAIWNVLNWDVAEEFFKKA 203
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 107 bits (266), Expect = 1e-24
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 4/203 (1%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFE--KSSLFDILTKS 59
+TL +L + ++ +S + HH KHH TYV N+ + + K IL
Sbjct: 4 YTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNE 63
Query: 60 SGGVFNNAAQIYNHDFYWDCLSPKA-TALSDELKGALEKDFGSLEQFKEDFIKSATTLFG 118
FN A + NH +W LSP + EL A+ FGS ++F+ F +ATT+ G
Sbjct: 64 KNLAFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQG 122
Query: 119 SGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFY 178
SGW + ++ K+ I Q + QT VPLL++D+WEHA+Y+ +KN + + + F+
Sbjct: 123 SGWAALGWDTLGNKLLIFQVYDQQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFW 182
Query: 179 EHINWHFVSQCYEWAKKEGLGSV 201
+NW V Y A + G +
Sbjct: 183 NVVNWADVQSRYAAATSQTKGLI 205
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 107 bits (266), Expect = 1e-24
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 4/203 (1%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFE--KSSLFDILTKS 59
+TL +L + ++ +S + HH KHH TYV N+ + + K IL
Sbjct: 4 YTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNE 63
Query: 60 SGGVFNNAAQIYNHDFYWDCLSPKA-TALSDELKGALEKDFGSLEQFKEDFIKSATTLFG 118
FN A + NH +W LSP + EL A+ FGS ++F+ F +ATT+ G
Sbjct: 64 KNLAFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQG 122
Query: 119 SGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFY 178
SGW + ++ K+ I Q + QT VPLL++D+WEHA+Y+ +KN + + + F+
Sbjct: 123 SGWAALGWDTLGNKLLIFQVYDEQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFW 182
Query: 179 EHINWHFVSQCYEWAKKEGLGSV 201
+NW V Y A + G +
Sbjct: 183 NVVNWADVQSRYAAATSQTKGLI 205
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 107 bits (266), Expect = 1e-24
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 4/203 (1%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFE--KSSLFDILTKS 59
+TL +L + ++ +S + HH KHH TYV N+ + + K IL
Sbjct: 4 YTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNE 63
Query: 60 SGGVFNNAAQIYNHDFYWDCLSPKA-TALSDELKGALEKDFGSLEQFKEDFIKSATTLFG 118
FN A + NH +W LSP + EL A+ FGS ++F+ F +ATT+ G
Sbjct: 64 KNLAFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQG 122
Query: 119 SGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFY 178
SGW + ++ K+ I Q + QT VPLL++D+WEHA+Y+ +KN + + + F+
Sbjct: 123 SGWAALGWDTLGNKLLIFQVYDHQTNFPLAIVPLLLLDMWEHAFYLQYKNVKVDFAKAFW 182
Query: 179 EHINWHFVSQCYEWAKKEGLGSV 201
+NW V Y A + G +
Sbjct: 183 NVVNWADVQSRYAAATSQTKGLI 205
>pdb|1IDS|A Chain A, Iron-Dependent Superoxide Dismutase (E.C.1.15.1.1)
(Fe-Superoxide Dismutase, Fe-Sod)
pdb|1IDS|B Chain B, Iron-Dependent Superoxide Dismutase (E.C.1.15.1.1)
(Fe-Superoxide Dismutase, Fe-Sod)
pdb|1IDS|C Chain C, Iron-Dependent Superoxide Dismutase (E.C.1.15.1.1)
(Fe-Superoxide Dismutase, Fe-Sod)
pdb|1IDS|D Chain D, Iron-Dependent Superoxide Dismutase (E.C.1.15.1.1)
(Fe-Superoxide Dismutase, Fe-Sod)
Length = 207
Score = 106 bits (265), Expect = 2e-24
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 4/203 (1%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFE--KSSLFDILTKS 59
+TL +L + ++ +S + HH KHH TYV N+ + + K IL
Sbjct: 4 YTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNE 63
Query: 60 SGGVFNNAAQIYNHDFYWDCLSPKA-TALSDELKGALEKDFGSLEQFKEDFIKSATTLFG 118
FN A + NH +W LSP + EL A+ FGS ++F+ F +ATT+ G
Sbjct: 64 KNLAFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQG 122
Query: 119 SGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFY 178
SGW + ++ K+ I Q + QT VPLL++D+WEHA+Y+ +KN + + + F+
Sbjct: 123 SGWAALGWDTLGNKLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFW 182
Query: 179 EHINWHFVSQCYEWAKKEGLGSV 201
+NW V Y A + G +
Sbjct: 183 NVVNWADVQSRYAAATSQTKGLI 205
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 104 bits (260), Expect = 7e-24
Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 4/203 (1%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFE--KSSLFDILTKS 59
+TL +L + ++ +S + HH KHH TYV N+ + + K IL
Sbjct: 4 YTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNE 63
Query: 60 SGGVFNNAAQIYNHDFYWDCLSPKA-TALSDELKGALEKDFGSLEQFKEDFIKSATTLFG 118
FN A + NH +W LSP + EL A+ FGS ++F+ F +ATT+ G
Sbjct: 64 KNLAFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQG 122
Query: 119 SGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFY 178
GW + ++ K+ I Q + QT VPLL++D+WEHA+Y+ +KN + + + F+
Sbjct: 123 CGWAALGWDTLGNKLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFW 182
Query: 179 EHINWHFVSQCYEWAKKEGLGSV 201
+NW V Y A + G +
Sbjct: 183 NVVNWADVQSRYAAATSQTKGLI 205
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 94.4 bits (233), Expect = 9e-21
Identities = 59/193 (30%), Positives = 101/193 (51%), Gaps = 23/193 (11%)
Query: 6 ELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTD-FEKSSL----FDILTKSS 60
+LP+ D++ ++S D H+ HH+ YVN N+L+ + K L +D+
Sbjct: 13 QLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRLEKLIKGDLPQGQYDLQGILR 72
Query: 61 GGVFN-NAAQIYNHDFYWDCLSPKATA---LSDELKGALEKDFGSLEQFKEDFIKSATTL 116
G FN N ++ H YW+ ++P L ++K +GS ++FK+ F +SA +L
Sbjct: 73 GLTFNINGHKL--HAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFKQVFSESANSL 130
Query: 117 FGSGWNWVAYNLDTQKIEIIQTSN------AQTPVTDKKVPLLVVDVWEHAYYIDHKNAR 170
GSGW + Y+ ++ ++I+ N A+ PV +L+VD +EHAYY+ +KN R
Sbjct: 131 PGSGWTVLYYDNESGNLQIMTVENHFMNHIAELPV------ILIVDEFEHAYYLQYKNKR 184
Query: 171 PVYLEKFYEHINW 183
YL ++ +NW
Sbjct: 185 GDYLNAWWNVVNW 197
>pdb|1SSS|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1SSS|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 205
Score = 90.9 bits (224), Expect = 1e-19
Identities = 53/192 (27%), Positives = 102/192 (52%), Gaps = 13/192 (6%)
Query: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFE-----KSSLFDIL 56
+ L LP+ D++ ++S D H+ HH+ YVN N+L++ + ++ +DI
Sbjct: 6 YELPPLPYKIDALEPYISKDIIDVHYNGHHKGYVNGANSLLERLEKVVKGDLQTGQYDIQ 65
Query: 57 TKSSGGVFN-NAAQIYNHDFYWDCLSPKATA---LSDELKGALEKDFGSLEQFKEDFIKS 112
G FN N ++ H YW+ ++P L + K +GS ++FK+ F ++
Sbjct: 66 GIIRGLTFNINGHKL--HALYWENMAPSGKGGGKPGGALADLINKQYGSFDRFKQVFTET 123
Query: 113 ATTLFGSGWNWVAYNLDTQKIEIIQTSNA-QTPVTDKKVPLLVVDVWEHAYYIDHKNARP 171
A +L G+GW + Y+ ++ ++I+ N Q + + + +L++D +EHAYY+ +KN R
Sbjct: 124 ANSLPGTGWAVLYYDTESGNLQIMTFENHFQNHIAEIPI-ILILDEFEHAYYLQYKNKRA 182
Query: 172 VYLEKFYEHINW 183
Y+ ++ +NW
Sbjct: 183 DYVNAWWNVVNW 194
>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
Bacterium
Length = 212
Score = 73.9 bits (180), Expect = 1e-14
Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 73 HDFYWDCLSPKATAL-SDELKGALEKDFGSLEQFKEDFIKSATTLFGSGWNWVAYNLDTQ 131
H+ Y+ L+P S+ LK +E+D G L+ + +K+A F GW + ++ +
Sbjct: 81 HELYFGMLTPGGKGEPSEALKKKIEEDIGGLDACTNE-LKAAAMAF-RGWAILGLDIFSG 138
Query: 132 KIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYEHINWHFVSQCYE 191
++ + +PL+V+D +EHAYY+D+KN RP Y++ F+++INW V++ +E
Sbjct: 139 RLVVNGLDAHNVYNLTGLIPLIVIDTYEHAYYVDYKNKRPPYIDAFFKNINWDVVNERFE 198
Query: 192 WAKK 195
A K
Sbjct: 199 KAMK 202
>pdb|1M4Z|A Chain A, Crystal Structure Of The N-Terminal Bah Domain Of Orc1p
pdb|1M4Z|B Chain B, Crystal Structure Of The N-Terminal Bah Domain Of Orc1p
Length = 238
Score = 28.5 bits (62), Expect = 0.61
Identities = 31/136 (22%), Positives = 59/136 (42%), Gaps = 6/136 (4%)
Query: 35 VNNLNNLIKGTDFEKSSLFDILTKSSGGVFNNAAQIYNHDFYWDCLSPKATALSDELKGA 94
+N LNN+++ F++ + FN A I N + TA +EL
Sbjct: 79 LNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFSETANKNELY-- 136
Query: 95 LEKDFGSLEQFKEDFIKSATTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLV 154
L + L+ F +FI+ A + GS W + N+D ++ ++ P +K V + +
Sbjct: 137 LTAELAELQLF--NFIRVANVMDGSKWEVLKGNVDPERDFTVR--YICEPTGEKFVDINI 192
Query: 155 VDVWEHAYYIDHKNAR 170
DV + ++ + A+
Sbjct: 193 EDVKAYIKKVEPREAQ 208
>pdb|1DRZ|A Chain A, U1a Spliceosomal ProteinHEPATITIS DELTA VIRUS GENOMIC
Ribozyme Complex
Length = 97
Score = 25.8 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 HHQTYVNNLNNLIKGTDFEKS 50
+H Y+NNLN IK + +KS
Sbjct: 8 NHTIYINNLNEKIKKDELKKS 28
>pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures
Length = 101
Score = 25.8 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 HHQTYVNNLNNLIKGTDFEKS 50
+H Y+NNLN IK + +KS
Sbjct: 8 NHTIYINNLNEKIKKDELKKS 28
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 25.8 bits (55), Expect = 4.0
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 116 LFGSGWNWVAYNLDTQKIEIIQTSNAQTP 144
LF G + +N DT+KIE I+ + ++P
Sbjct: 260 LFSKGGSIYIFNPDTEKIEKIEIGDLESP 288
>pdb|1FHT| Rna-Binding Domain Of The U1a Spliceosomal Protein U1a117, Nmr,
43 Structures
Length = 116
Score = 25.8 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 HHQTYVNNLNNLIKGTDFEKS 50
+H Y+NNLN IK + +KS
Sbjct: 8 NHTIYINNLNEKIKKDELKKS 28
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
Length = 559
Score = 25.8 bits (55), Expect = 4.0
Identities = 18/51 (35%), Positives = 24/51 (46%), Gaps = 2/51 (3%)
Query: 112 SATTLFGSGWNWVAYNLDTQK--IEIIQTSNAQTPVTDKKVPLLVVDVWEH 160
+ T LF N N+D K I+ I T N PV+D V + VD W +
Sbjct: 366 TGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTY 416
>pdb|1CX0|A Chain A, Hepatitis Delta Virus Ribozyme
Length = 95
Score = 25.8 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 HHQTYVNNLNNLIKGTDFEKS 50
+H Y+NNLN IK + +KS
Sbjct: 6 NHTIYINNLNEKIKKDELKKS 26
>pdb|1NRC|A Chain A, Protein From U1 Small Nuclear Ribonucleoprotein (Snrnp
U1) (N-Terminal Fragment, Residues 1 - 95) Mutant With
Gln 85 Replaced By Cys (Q85c)
pdb|1NRC|B Chain B, Protein From U1 Small Nuclear Ribonucleoprotein (Snrnp
U1) (N-Terminal Fragment, Residues 1 - 95) Mutant With
Gln 85 Replaced By Cys (Q85c)
Length = 95
Score = 25.8 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 HHQTYVNNLNNLIKGTDFEKS 50
+H Y+NNLN IK + +KS
Sbjct: 9 NHTIYINNLNEKIKKDELKKS 29
>pdb|1URN|A Chain A, U1aRNA COMPLEX
pdb|1URN|B Chain B, U1aRNA COMPLEX
pdb|1URN|C Chain C, U1aRNA COMPLEX
Length = 97
Score = 25.8 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 HHQTYVNNLNNLIKGTDFEKS 50
+H Y+NNLN IK + +KS
Sbjct: 8 NHTIYINNLNEKIKKDELKKS 28
>pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
pdb|1M5K|F Chain F, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
pdb|1M5O|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5O|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5P|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5P|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5V|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5V|F Chain F, Transition State Stabilization By A Catalytic Rna
Length = 100
Score = 25.8 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 HHQTYVNNLNNLIKGTDFEKS 50
+H Y+NNLN IK + +KS
Sbjct: 9 NHTIYINNLNEKIKKDELKKS 29
>pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna
Complex Reveals The Basis Of Cooperativity In
Regulation Of Polyadenylation By Human U1a Protein
pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Protein-Pie Rna
Complex Reveals The Basis Of Cooperativity In
Regulation Of Polyadenylation By Human U1a Protein
Length = 101
Score = 25.8 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 HHQTYVNNLNNLIKGTDFEKS 50
+H Y+NNLN IK + +KS
Sbjct: 8 NHTIYINNLNEKIKKDELKKS 28
>pdb|1CEN| Cellulase (Celc) Mutant With Glu 140 Replaced By Gln Complexed
With Cellohexaose
pdb|1CEO| Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 25.0 bits (53), Expect = 6.8
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 178 YEHINWHFVSQCYEWAKKEGLGSV 201
Y+ ++ +C EW KK LG V
Sbjct: 63 YKEDGLSYIDRCLEWCKKYNLGLV 86
>pdb|1CEC| Glycosyl Hydrolase, Cellulase, Family A5 OF CellulasesGLYCOSYL
HYDROLASES, CLOSTRIDIUM THERMOCELLUM, Endoglucanase C
Mol_id: 1; Molecule: Endoglucanase Celc; Chain: Null;
Synonym: Egc, Cellulase Celc, Endo-1,4-Beta-Glucanase
Celc; Ec: 3.2.1.4; Engineered: Yes; Other_details:
Cellulase Family A5
Length = 343
Score = 25.0 bits (53), Expect = 6.8
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 178 YEHINWHFVSQCYEWAKKEGLGSV 201
Y+ ++ +C EW KK LG V
Sbjct: 63 YKEDGLSYIDRCLEWCKKYNLGLV 86
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,378,137
Number of Sequences: 13198
Number of extensions: 58191
Number of successful extensions: 222
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 46
length of query: 213
length of database: 2,899,336
effective HSP length: 84
effective length of query: 129
effective length of database: 1,790,704
effective search space: 231000816
effective search space used: 231000816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)