BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645018|ref|NP_207188.1| adhesin-thiol peroxidase
(tagD) [Helicobacter pylori 26695]
(166 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys ... 36 0.002
pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood... 30 0.11
pdb|1E2Y|G Chain G, Tryparedoxin Peroxidase From Crithidia ... 29 0.24
pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed... 27 1.6
pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A >gi|108... 27 1.6
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Compl... 27 1.6
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P32... 27 1.6
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complex... 25 3.5
pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complex... 25 3.5
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2 - Human Cyc... 25 3.5
pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-... 25 3.5
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NI... 25 3.5
pdb|1KE5|A Chain A, Cdk2 Complexed With N-Methyl-4-{[(2-Oxo... 25 3.5
pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2C... 25 3.5
pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh... 25 4.6
pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Rec... 25 4.6
pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Rec... 25 4.6
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain ... 25 4.6
pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Rec... 25 4.6
pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase ... 25 6.0
pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna Prim... 25 6.0
pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin 24 7.8
>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin,
Hbp23.
pdb|1QQ2|B Chain B, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin,
Hbp23
Length = 199
Score = 36.2 bits (82), Expect = 0.002
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 19 KVGDKAPDVK----LVNGDLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKL 74
K+G AP K + +G ++++L ++ V P VC + F+++ +
Sbjct: 7 KIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEF 66
Query: 75 PSVSFSVI--SMDLPFSQ------GQICGAEGIKDLRILSDFRYKAFGENYGVLLGKGSL 126
++ VI S+D FS + G G ++ ++SD + + ++YGVL
Sbjct: 67 KKLNCQVIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPK-RTIAQDYGVLKAD--- 122
Query: 127 QGLLARSVFVLDDKGVV 143
+G+ R +F++DDKG++
Sbjct: 123 EGISFRGLFIIDDKGIL 139
>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|B Chain B, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|C Chain C, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|D Chain D, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|E Chain E, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|F Chain F, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|G Chain G, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|H Chain H, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|I Chain I, Thioredoxin Peroxidase B From Red Blood Cells
pdb|1QMV|J Chain J, Thioredoxin Peroxidase B From Red Blood Cells
Length = 197
Score = 30.4 bits (67), Expect = 0.11
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 19 KVGDKAPDVK---LVNGDLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKLP 75
++G APD K +V+G +EV L ++ V+ P V + F+ +
Sbjct: 6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVXPTEIIAFSNRAEDFR 65
Query: 76 SVSFSV--ISMDLPFSQ------GQICGAEGIKDLRILSDFRYKAFGENYGVLLGKGSLQ 127
+ V +S+D F+ + G G ++ +L+D + E+YGVL +
Sbjct: 66 KLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVT-RRLSEDYGVLKTD---E 121
Query: 128 GLLARSVFVLDDKGVV 143
G+ R +F++D KGV+
Sbjct: 122 GIAYRGLFIIDGKGVL 137
>pdb|1E2Y|G Chain G, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|B Chain B, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|C Chain C, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|I Chain I, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|H Chain H, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|D Chain D, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|J Chain J, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|E Chain E, Tryparedoxin Peroxidase From Crithidia Fasciculata
pdb|1E2Y|F Chain F, Tryparedoxin Peroxidase From Crithidia Fasciculata
Length = 188
Score = 29.3 bits (64), Expect = 0.24
Identities = 31/119 (26%), Positives = 50/119 (41%), Gaps = 12/119 (10%)
Query: 31 NGDLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKLPSVSFSVI--SMDLPF 88
NG ++V+L ++ V+ P VC + F++ + ++ VI S D +
Sbjct: 23 NGTFKKVSLSSYKGKYVVLFFYPXDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEY 82
Query: 89 SQGQIC------GAEGIKDLRILSDFRYKAFGENYGVLLGKGSLQGLLARSVFVLDDKG 141
S Q G G + L+D + KA YGVL G+ R VF++D G
Sbjct: 83 SHLQWTSVDRKKGGLGPXAIPXLAD-KTKAIARAYGVL---DEDSGVAYRGVFIIDPNG 137
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 26.6 bits (57), Expect = 1.6
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 110 YKAFGENYGVLLGKGSLQGLLARSVFVLDDKGVVIYKEIVQNILEEP 156
YKA G + + G GSL+G +++ + D + I K+ EP
Sbjct: 65 YKANGTEFAIQYGTGSLEGYISQDTLSIGD--LTIPKQDFAEATSEP 109
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp-108,420 And Yeast Aspartic Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 26.6 bits (57), Expect = 1.6
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 110 YKAFGENYGVLLGKGSLQGLLARSVFVLDDKGVVIYKEIVQNILEEP 156
YKA G + + G GSL+G +++ + D + I K+ EP
Sbjct: 65 YKANGTEFAIQYGTGSLEGYISQDTLSIGD--LTIPKQDFAEATSEP 109
>pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
Length = 524
Score = 26.6 bits (57), Expect = 1.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 129 LLARSVFVLDDKGVVIYKEIVQNILEEPNYEAL 161
+L++ V D G I ++++ N L +P +EA+
Sbjct: 464 ILSQQALVAVDNGAPINQDLISNFLSDPVHEAI 496
>pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
Length = 329
Score = 26.6 bits (57), Expect = 1.6
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 110 YKAFGENYGVLLGKGSLQGLLARSVFVLDDKGVVIYKEIVQNILEEP 156
YKA G + + G GSL+G +++ + D + I K+ EP
Sbjct: 65 YKANGTEFAIQYGTGSLEGYISQDTLSIGD--LTIPKQDFAEATSEP 109
>pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr
160
Length = 299
Score = 25.4 bits (54), Expect = 3.5
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 33 DLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKLPSVSFSVISM 84
+ Q+V + +G V A LTG V L+ + +T +PS + IS+
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISL 55
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 25.4 bits (54), Expect = 3.5
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 33 DLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKLPSVSFSVISM 84
+ Q+V + +G V A LTG V L+ + +T +PS + IS+
Sbjct: 3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISL 54
>pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2 - Human Cyclin A3 Complex
With The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2 - Human Cyclin A3 Complex
With The Inhibitor Indirubin-5-Sulphonate Bound
Length = 297
Score = 25.4 bits (54), Expect = 3.5
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 33 DLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKLPSVSFSVISM 84
+ Q+V + +G V A LTG V L+ + +T +PS + IS+
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISL 55
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin
A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin
A
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
Length = 298
Score = 25.4 bits (54), Expect = 3.5
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 33 DLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKLPSVSFSVISM 84
+ Q+V + +G V A LTG V L+ + +T +PS + IS+
Sbjct: 3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISL 54
>pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
Substrate
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
Substrate
pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
Length = 299
Score = 25.4 bits (54), Expect = 3.5
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 33 DLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKLPSVSFSVISM 84
+ Q+V + +G V A LTG V L+ + +T +PS + IS+
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISL 55
>pdb|1KE5|A Chain A, Cdk2 Complexed With N-Methyl-4-{[(2-Oxo-1,2-Dihydro-3h-
Indol-3-Ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1FIN|A Chain A, Cyclin A - Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A - Cyclin-Dependent Kinase 2 Complex
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN
OXINDOLE Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN
OXINDOLE Inhibitor
pdb|1HCL| Human Cyclin-Dependent Kinase 2
pdb|1HCK| Human Cyclin-Dependent Kinase 2
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1JSV|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With 4-[(6-Amino-4-Pyrimidinyl)
Amino]benzenesulfonamide
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1AQ1| Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor
Staurosporine
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
Length = 298
Score = 25.4 bits (54), Expect = 3.5
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 33 DLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKLPSVSFSVISM 84
+ Q+V + +G V A LTG V L+ + +T +PS + IS+
Sbjct: 3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISL 54
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
Length = 303
Score = 25.4 bits (54), Expect = 3.5
Identities = 15/52 (28%), Positives = 25/52 (47%)
Query: 33 DLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKLPSVSFSVISM 84
+ Q+V + +G V A LTG V L+ + +T +PS + IS+
Sbjct: 8 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISL 59
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 25.0 bits (53), Expect = 4.6
Identities = 19/66 (28%), Positives = 36/66 (53%), Gaps = 1/66 (1%)
Query: 8 EETYQLEGKALKVGDKAPDVKLVNGDLQEVNLLKQGVR-FQVVSALPSLTGSVCLLQAKH 66
EE +LE + L + D A +++ + E+ LK+ + +V+ L ++TG L A+
Sbjct: 173 EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232
Query: 67 FNEQTG 72
F+E+ G
Sbjct: 233 FDEKVG 238
>pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 293
Score = 25.0 bits (53), Expect = 4.6
Identities = 19/66 (28%), Positives = 36/66 (53%), Gaps = 1/66 (1%)
Query: 8 EETYQLEGKALKVGDKAPDVKLVNGDLQEVNLLKQGVR-FQVVSALPSLTGSVCLLQAKH 66
EE +LE + L + D A +++ + E+ LK+ + +V+ L ++TG L A+
Sbjct: 172 EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 231
Query: 67 FNEQTG 72
F+E+ G
Sbjct: 232 FDEKVG 237
>pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 294
Score = 25.0 bits (53), Expect = 4.6
Identities = 19/66 (28%), Positives = 36/66 (53%), Gaps = 1/66 (1%)
Query: 8 EETYQLEGKALKVGDKAPDVKLVNGDLQEVNLLKQGVR-FQVVSALPSLTGSVCLLQAKH 66
EE +LE + L + D A +++ + E+ LK+ + +V+ L ++TG L A+
Sbjct: 172 EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 231
Query: 67 FNEQTG 72
F+E+ G
Sbjct: 232 FDEKVG 237
>pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
Length = 296
Score = 25.0 bits (53), Expect = 4.6
Identities = 19/66 (28%), Positives = 36/66 (53%), Gaps = 1/66 (1%)
Query: 8 EETYQLEGKALKVGDKAPDVKLVNGDLQEVNLLKQGVR-FQVVSALPSLTGSVCLLQAKH 66
EE +LE + L + D A +++ + E+ LK+ + +V+ L ++TG L A+
Sbjct: 173 EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232
Query: 67 FNEQTG 72
F+E+ G
Sbjct: 233 FDEKVG 238
>pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 25.0 bits (53), Expect = 4.6
Identities = 19/66 (28%), Positives = 36/66 (53%), Gaps = 1/66 (1%)
Query: 8 EETYQLEGKALKVGDKAPDVKLVNGDLQEVNLLKQGVR-FQVVSALPSLTGSVCLLQAKH 66
EE +LE + L + D A +++ + E+ LK+ + +V+ L ++TG L A+
Sbjct: 173 EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232
Query: 67 FNEQTG 72
F+E+ G
Sbjct: 233 FDEKVG 238
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 24.6 bits (52), Expect = 6.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 56 TGSVCLLQAKHFNEQTGKLPSVSFSVISMDLPFSQGQ 92
+ VC + HF ++ ++S S I+ D+ GQ
Sbjct: 98 SSEVCKTKIHHFEGTLARVENLSDSTITFDIQLDDGQ 134
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
Length = 698
Score = 24.6 bits (52), Expect = 6.0
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 108 FRYKAFGENYGVLLGKGSLQGLLARSVFVLDDKGVVIYKEIVQNILEE 155
F Y A E G ++G G +G + F+ + + +E +Q L E
Sbjct: 522 FLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVE 569
>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
Length = 1056
Score = 24.3 bits (51), Expect = 7.8
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 100 KDLRILSDFRYKAFGENYGVLLGKGSLQGLLARSVFVLDDKGVVI---YKEIVQNILEEP 156
K+LR + + Y F E G ++ + + SVF + + VVI K I++ I P
Sbjct: 190 KNLRSTAVYNYAIFDEPSGYIIKSAHSEEIQQLSVFDIKEGNVVIESRQKLILEGIQSAP 249
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.139 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 935,822
Number of Sequences: 13198
Number of extensions: 35226
Number of successful extensions: 95
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 22
length of query: 166
length of database: 2,899,336
effective HSP length: 81
effective length of query: 85
effective length of database: 1,830,298
effective search space: 155575330
effective search space used: 155575330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)