BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645019|ref|NP_207189.1| purine-binding chemotaxis
protein (cheW) [Helicobacter pylori 26695]
(165 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K0S|A Chain A, Solution Structure Of The Chemotaxis Pr... 64 1e-11
pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Hum... 25 4.5
pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Hum... 25 4.5
pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal... 25 5.9
pdb|1JHJ|A Chain A, Crystal Structure Of The Apc10DOC1 SUBU... 25 5.9
pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With G... 24 7.7
pdb|1FEP|A Chain A, Ferric Enterobactin Receptor 24 7.7
pdb|1MOS|A Chain A, Isomerase Domain Of Glucosamine 6-Phosp... 24 7.7
pdb|3MDE|A Chain A, Medium Chain Acyl-Coa Dehydrogenase (Mc... 24 7.7
>pdb|1K0S|A Chain A, Solution Structure Of The Chemotaxis Protein Chew From The
Thermophilic Organism Thermotoga Maritima
Length = 151
Score = 63.5 bits (153), Expect = 1e-11
Identities = 38/136 (27%), Positives = 74/136 (53%), Gaps = 4/136 (2%)
Query: 29 QFIGFIIGDEEYAIPILNILEIVKPIGYTRVPETPNYVLGVFNLRGNVFPLISLRLKFGL 88
+ + F I ++ A + NI +++ T VP++ ++V GV NLRG + P+++L G+
Sbjct: 12 EVLSFEIDEQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAKILGI 71
Query: 89 KAEKQNKDTRYLVVRHNDQIAGFFIDRLTEAIRIKQTDIDPVPETLSDN-NNLTYGIGKQ 147
++Q K +V R D GF +DR+ +RI + +D +SD + G+ K
Sbjct: 72 SFDEQ-KMKSIIVARTKDVEVGFLVDRVLGVLRITENQLDLT--NVSDKFGKKSKGLVKT 128
Query: 148 NDRLVTILRVEEILKK 163
+ RL+ L +++I+++
Sbjct: 129 DGRLIIYLDIDKIIEE 144
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 25.0 bits (53), Expect = 4.5
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 10 ERQKEASAGSKQEDNEEVLQFIGFIIGDEEYAIPILNILEIVKPIGYTRVPETPNYV-LG 68
E+QKE A +++ EE++ EY +P++ + + T +PE + LG
Sbjct: 18 EQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMN-THIPENCGGLGLG 76
Query: 69 VFNLRGNVFPLISLRLKFGLKA-----EKQNKDTRYLVVRHNDQIAGFFIDRLTE 118
F+ LIS L +G E + +++ NDQ ++ R+TE
Sbjct: 77 TFDA-----CLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
Length = 396
Score = 25.0 bits (53), Expect = 4.5
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 10 ERQKEASAGSKQEDNEEVLQFIGFIIGDEEYAIPILNILEIVKPIGYTRVPETPNYV-LG 68
E+QKE A +++ EE++ EY +P++ + + T +PE + LG
Sbjct: 18 EQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMN-THIPENCGGLGLG 76
Query: 69 VFNLRGNVFPLISLRLKFGLKA-----EKQNKDTRYLVVRHNDQIAGFFIDRLTE 118
F+ LIS L +G E + +++ NDQ ++ R+TE
Sbjct: 77 TFDA-----CLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
>pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
pdb|1B3Q|A Chain A, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
Length = 379
Score = 24.6 bits (52), Expect = 5.9
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 40 YAIPILNILEI--VKPIGYTRVPETPNYVLGVFNLRGNVFPLISLRLKFGLKAEKQNKDT 97
YAIPI NI I + RV + V +RG V P+ L ++ +++ ++
Sbjct: 264 YAIPIANIDTILSISKEDIQRVQDRD-----VIVIRGEVIPVYRLWEVLQIEHKEELEEM 318
Query: 98 RYLVVRHNDQIAGFFIDRL 116
++VR ++ G +D L
Sbjct: 319 EAVIVRVGNRKYGIVVDDL 337
>pdb|1JHJ|A Chain A, Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE HUMAN
Anaphase-Promoting Complex
Length = 171
Score = 24.6 bits (52), Expect = 5.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 35 IGDEEYAIPILNILEIVKPIGYTRVPETPNY 65
+G+ + + + LE+V+P G+ VP T N+
Sbjct: 97 VGNNFHNLQEIRQLELVEPSGWIHVPLTDNH 127
>pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|B Chain B, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|C Chain C, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
Length = 608
Score = 24.3 bits (51), Expect = 7.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 29 QFIGFIIGDEEYAIPILNILEIVKPIGYT 57
Q GF+ D + I + ++ E++ PI YT
Sbjct: 549 QDAGFVSSDNMHIIEMPHVEEVIAPIFYT 577
>pdb|1FEP|A Chain A, Ferric Enterobactin Receptor
Length = 724
Score = 24.3 bits (51), Expect = 7.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 129 PVPETLSDNNNLTYGIGKQN----DRLVTI 154
PV ET+ NN+TY + +N DRL I
Sbjct: 573 PVSETVXWTNNITYXLKSENKTTGDRLSII 602
>pdb|1MOS|A Chain A, Isomerase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With 2-Amino-2-Deoxyglucitol 6-Phosphate
pdb|1MOQ| Isomerase Domain Of Glucosamine 6-Phosphate Synthase Complexed
With Glucosamine 6-Phosphate
pdb|1MOR| Isomerase Domain Of Glucosamine 6-Phosphate Synthase Complexed
With Glucose 6-Phosphate
Length = 368
Score = 24.3 bits (51), Expect = 7.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 29 QFIGFIIGDEEYAIPILNILEIVKPIGYT 57
Q GF+ D + I + ++ E++ PI YT
Sbjct: 309 QDAGFVSSDNMHIIEMPHVEEVIAPIFYT 337
>pdb|3MDE|A Chain A, Medium Chain Acyl-Coa Dehydrogenase (Mcad)
(E.C.1.3.99.3) Complexed With Octanoyl-Coa
pdb|3MDE|B Chain B, Medium Chain Acyl-Coa Dehydrogenase (Mcad)
(E.C.1.3.99.3) Complexed With Octanoyl-Coa
pdb|3MDD|A Chain A, Medium Chain Acyl-Coa Dehydrogenase (Mcad)
(E.C.1.3.99.3)
pdb|3MDD|B Chain B, Medium Chain Acyl-Coa Dehydrogenase (Mcad)
(E.C.1.3.99.3)
Length = 385
Score = 24.3 bits (51), Expect = 7.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 7 DLFERQKEASAGSKQEDNEEVLQFIGFIIGDEEYAIPIL 45
+L E+QKE A +++ EE++ EY +P+L
Sbjct: 5 ELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLL 43
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.142 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 920,864
Number of Sequences: 13198
Number of extensions: 38063
Number of successful extensions: 57
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 9
length of query: 165
length of database: 2,899,336
effective HSP length: 81
effective length of query: 84
effective length of database: 1,830,298
effective search space: 153745032
effective search space used: 153745032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)