BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645020|ref|NP_207190.1| histidine kinase (cheA)
[Helicobacter pylori 26695]
(803 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal... 348 1e-96
pdb|1I5D|A Chain A, Structure Of Chea Domain P4 In Complex ... 218 2e-57
pdb|1I58|A Chain A, Structure Of The Histidine Kinase Chea ... 212 1e-55
pdb|1I5N|D Chain D, Crystal Structure Of The P1 Domain Of C... 67 1e-11
pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia C... 62 3e-10
pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylat... 60 7e-10
pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C) 60 7e-10
pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant... 60 7e-10
pdb|1NTR| Solution Structure Of The N-Terminal Receiver D... 60 7e-10
pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Me... 60 9e-10
pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver ... 60 9e-10
pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2CHF| ... 60 9e-10
pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted,... 60 1e-09
pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures) 60 1e-09
pdb|3CHY| CheY >gi|13096520|pdb|1FFG|A Chain A, Chey-Bind... 60 1e-09
pdb|1YMV| Signal Transduction Protein Chey Mutant With Ph... 60 1e-09
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotax... 60 1e-09
pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyper... 60 1e-09
pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t >gi... 59 2e-09
pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t >gi... 59 2e-09
pdb|5CHY| Structure Of Chemotaxis Protein Chey 58 5e-09
pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylat... 58 5e-09
pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile... 57 6e-09
pdb|1EHC| Structure Of Signal Transduction Protein Chey 57 8e-09
pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Mo... 57 8e-09
pdb|1E6M|A Chain A, Two-Component Signal Transduction Syste... 57 1e-08
pdb|1E6K|A Chain A, Two-Component Signal Transduction Syste... 57 1e-08
pdb|1E6L|A Chain A, Two-Component Signal Transduction Syste... 57 1e-08
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey >g... 55 2e-08
pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp... 55 3e-08
pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13... 53 2e-07
pdb|1A2O|A Chain A, Structural Basis For Methylesterase Che... 51 6e-07
pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound F... 50 1e-06
pdb|1TMY| Chey From Thermotoga Maritima (Apo-I) >gi|27811... 49 2e-06
pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial P... 49 2e-06
pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resi... 49 2e-06
pdb|1F51|F Chain F, A Transient Interaction Between Two Pho... 48 4e-06
pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo... 47 1e-05
pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound R... 43 1e-04
pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprP... 42 2e-04
pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Resp... 42 2e-04
pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domai... 42 2e-04
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 42 3e-04
pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RE... 41 5e-04
pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal... 40 0.001
pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase D... 35 0.043
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Co... 32 0.36
pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New F... 30 0.81
pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-... 30 0.81
pdb|1LNR|M Chain M, Crystal Structure Of The Large Ribosoma... 30 1.1
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 29 1.8
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 29 1.8
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain >gi... 29 2.3
pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bon... 29 2.3
pdb|1PHN|B Chain B, Structure Of Phycocyanin From Cyanidium... 28 4.0
pdb|1FEW|A Chain A, Crystal Structure Of SmacDIABLO 28 4.0
pdb|1BUC|A Chain A, Butyryl-Coa Dehydrogenase (Bcad) (Bacte... 28 5.2
pdb|1KQ3|A Chain A, Crystal Structure Of Glycerol Dehydroge... 28 5.2
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 27 6.8
pdb|1IMU|A Chain A, Solution Structure Of Hi0257, A Ribosom... 27 6.8
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Comp... 27 6.8
pdb|5REQ|A Chain A, Methylmalonyl-Coa Mutase, Y89f Mutant, ... 27 8.9
pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant >... 27 8.9
pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot 27 8.9
pdb|1AVO|B Chain B, Proteasome Activator Reg(Alpha) >gi|278... 27 8.9
pdb|6REQ|A Chain A, Methylmalonyl-Coa Mutase, 3-Carboxyprop... 27 8.9
>pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
pdb|1B3Q|A Chain A, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
Length = 379
Score = 348 bits (893), Expect = 1e-96
Identities = 178/387 (45%), Positives = 272/387 (69%), Gaps = 9/387 (2%)
Query: 262 QTVRVDVRRLDHLMNLIGELVLGKNRLIRIYSDVEERYDGEKFLEELNQVVSSISAVTTD 321
QTVRVD+ +LD+LM+L+GELV+ ++R++ + ++Y+ ++EL++ +S +S +T D
Sbjct: 2 QTVRVDIEKLDNLMDLMGELVIARSRIL----ETLKKYN----IKELDESLSHLSRITLD 53
Query: 322 LQLAVMKTRMQPVGKVFNKFPRMVRDLSRELGKSIELIIEGEETELDKSIVEEIGDPLIH 381
LQ VMK RM P+ VFN+FPRMVRDL++++ K + I+ GE+TELD++ VEEIG+PL+H
Sbjct: 54 LQNVVMKIRMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLH 113
Query: 382 IIRNSCDHGIEPLEERRKLNKPETGKVQLSAYNEGNHIVIKISDDGKGLDPVMLKEKAIE 441
++RN+ DHGIEP EER KP G + LSA +EGN++VI++ DDG+G+D + KAIE
Sbjct: 114 LLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIE 173
Query: 442 KGVISERDAEGMSDREAFNLIFKPGFSTAKVVSNVSGRGVGMDVVKTNIEKLNGIIEIDS 501
KG+I E A +SD+E N +F PGFST + VS VSGRGVGMDVVK +E LNG + I+S
Sbjct: 174 KGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSMGIES 233
Query: 502 EVGVGTTQKLKIPLTLAIIQALLVGVQEEYYAIPLSSVLETVRISQDEIYTVDGKSVLRL 561
E GT +++PLTLAII ALLV V YAIP++++ + IS+++I V + V+ +
Sbjct: 234 EKDKGTKVTIRLPLTLAIICALLVKVNNLVYAIPIANIDTILSISKEDIQRVQDRDVIVI 293
Query: 562 RDEVLSLVRLSDIFKVDAILESNSDVYVVIIGLADQKIGVIVDYLIGQEEVVIKSLGYYL 621
R EV+ + RL ++ +++ E ++ VI+ + ++K G++VD L+GQ+++VIKSLG
Sbjct: 294 RGEVIPVYRLWEVLQIEH-KEELEEMEAVIVRVGNRKYGIVVDDLLGQDDIVIKSLGKVF 352
Query: 622 KNTRGIAGATVRGDGKITLIVDVGAMM 648
+ +GA + GDG I LI++V ++
Sbjct: 353 SEVKEFSGAAILGDGSIALIINVSGIV 379
>pdb|1I5D|A Chain A, Structure Of Chea Domain P4 In Complex With Tnp-Atp
Length = 191
Score = 218 bits (556), Expect = 2e-57
Identities = 106/191 (55%), Positives = 141/191 (73%)
Query: 326 VMKTRMQPVGKVFNKFPRMVRDLSRELGKSIELIIEGEETELDKSIVEEIGDPLIHIIRN 385
VMK RM P+ VFN+FPRMVRDL++++ K + I+ GE+TELD++ VEEIG+PL+H++RN
Sbjct: 1 VMKIRMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRN 60
Query: 386 SCDHGIEPLEERRKLNKPETGKVQLSAYNEGNHIVIKISDDGKGLDPVMLKEKAIEKGVI 445
+ DHGIEP EER KP G + LSA +EGN++VI++ DDG+G+D + KAIEKG+I
Sbjct: 61 AIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLI 120
Query: 446 SERDAEGMSDREAFNLIFKPGFSTAKVVSNVSGRGVGMDVVKTNIEKLNGIIEIDSEVGV 505
E A +SD+E N +F PGFST + VS VSGRGVGMDVVK +E LNG I I+SE
Sbjct: 121 DESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDK 180
Query: 506 GTTQKLKIPLT 516
GT +++PLT
Sbjct: 181 GTKVTIRLPLT 191
>pdb|1I58|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
pdb|1I59|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I5A|A Chain A, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I5B|A Chain A, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5B|B Chain B, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5C|B Chain B, Structure Of Chea Domain P4 In Complex With Adp
pdb|1I5C|A Chain A, Structure Of Chea Domain P4 In Complex With Adp
pdb|1I5A|B Chain B, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I59|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I58|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
Length = 189
Score = 212 bits (539), Expect = 1e-55
Identities = 102/188 (54%), Positives = 138/188 (73%)
Query: 329 TRMQPVGKVFNKFPRMVRDLSRELGKSIELIIEGEETELDKSIVEEIGDPLIHIIRNSCD 388
+ M P+ VFN+FPRMVRDL++++ K + I+ GE+TELD++ VEEIG+PL+H++RN+ D
Sbjct: 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAID 61
Query: 389 HGIEPLEERRKLNKPETGKVQLSAYNEGNHIVIKISDDGKGLDPVMLKEKAIEKGVISER 448
HGIEP EER KP G + LSA +EGN++VI++ DDG+G+D + KAIEKG+I E
Sbjct: 62 HGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 121
Query: 449 DAEGMSDREAFNLIFKPGFSTAKVVSNVSGRGVGMDVVKTNIEKLNGIIEIDSEVGVGTT 508
A +SD+E N +F PGFST + VS VSGRGVGMDVVK +E LNG I I+SE GT
Sbjct: 122 KAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTK 181
Query: 509 QKLKIPLT 516
+++PLT
Sbjct: 182 VTIRLPLT 189
>pdb|1I5N|D Chain D, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
pdb|1I5N|A Chain A, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
pdb|1I5N|C Chain C, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
pdb|1I5N|B Chain B, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
Length = 146
Score = 66.6 bits (161), Expect = 1e-11
Identities = 34/99 (34%), Positives = 56/99 (56%)
Query: 3 DLQEIMEDFLIEAFEMNEQLDQDLVELEHNPEDLDLLNRIFRVAHTIKGSSSFLNLNILT 62
D+ + + F EA E+ +Q L++L D + LN IFR AH+IKG + IL
Sbjct: 4 DISDFYQTFFDEADELLADXEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQ 63
Query: 63 HLTHNMEDVLNRARKGEIKITPDIMDVVLRSIDLMKTLL 101
TH E++L+ AR+GE ++ DI+++ L + D+ + L
Sbjct: 64 ETTHLXENLLDEARRGEXQLNTDIINLFLETKDIXQEQL 102
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
Length = 127
Score = 61.6 bits (148), Expect = 3e-10
Identities = 33/115 (28%), Positives = 65/115 (55%), Gaps = 2/115 (1%)
Query: 679 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
+L ++D + R ++ L+ G +EA + + L + PD IL+D +P G
Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN--EPWPDLILLDWMLPGGSGI 62
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVK 793
F +++ + +++P++ +T+R + DR+RG+E+G +YITKP+S + L +K
Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 60.5 bits (145), Expect = 7e-10
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 678 IVLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDG 737
IV +DD S+ R ++ + L G+T NG E L L + K PD +L DI MP MDG
Sbjct: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDG 62
Query: 738 YTFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSI 796
++++ + LP+I +T+ + + G +Y+ KP+ + +V+R+I
Sbjct: 63 LALLKQIKQ--RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119
>pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C)
Length = 128
Score = 60.5 bits (145), Expect = 7e-10
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G I+ D MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGF--GFIICDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R + LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 60.5 bits (145), Expect = 7e-10
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 10 LVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 67
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 68 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 117
>pdb|1NTR| Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 60.5 bits (145), Expect = 7e-10
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 678 IVLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDG 737
IV +DD S+ R ++ + L G+T NG E L L + K PD +L DI MP MDG
Sbjct: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDG 62
Query: 738 YTFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSI 796
++++ + LP+I +T+ + + G +Y+ KP+ + +V+R+I
Sbjct: 63 LALLKQIKQ--RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 60.1 bits (144), Expect = 9e-10
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 60.1 bits (144), Expect = 9e-10
Identities = 32/119 (26%), Positives = 68/119 (56%), Gaps = 4/119 (3%)
Query: 679 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
+L +DD + +++ L+ G ++ A++G E L+ K + PD I++D+ +PK+DG
Sbjct: 6 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALK--KAETEKPDLIVLDVMLPKLDGI 63
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIK 797
++R+ P++ +T++ + D++ G+E G +Y+TKP+S + VK ++
Sbjct: 64 EVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 120
>pdb|2CHE| Chey Complexed With Mg2+
pdb|2CHF| Chey
Length = 128
Score = 60.1 bits (144), Expect = 9e-10
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G I+ D MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGF--GFIISDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R + LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted, And Ala 2 Replaced
By Ser (Del(M1),Ins(R1),A2s) (Nmr, 20 Structures)
Length = 129
Score = 59.7 bits (143), Expect = 1e-09
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 66
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 67 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures)
Length = 128
Score = 59.7 bits (143), Expect = 1e-09
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3CHY| CheY
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1CHN| Chey Complexed With Mg2+ In The Active Site
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
Length = 128
Score = 59.7 bits (143), Expect = 1e-09
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1YMV| Signal Transduction Protein Chey Mutant With Phe 14 Replaced By
Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly
Length = 129
Score = 59.7 bits (143), Expect = 1e-09
Identities = 34/110 (30%), Positives = 55/110 (49%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD T R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 9 LVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 66
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 67 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
Length = 129
Score = 59.7 bits (143), Expect = 1e-09
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 66
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 67 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 59.7 bits (143), Expect = 1e-09
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATL 115
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 59.3 bits (142), Expect = 2e-09
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD+ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 5 LVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 62
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ T+ K + + ++G + Y+ KP++ L
Sbjct: 63 ELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATL 112
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 59.3 bits (142), Expect = 2e-09
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD+ST R I R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 5 LVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 62
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 63 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 112
>pdb|5CHY| Structure Of Chemotaxis Protein Chey
Length = 128
Score = 57.8 bits (138), Expect = 5e-09
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + ++ KP++ L
Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATL 115
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 57.8 bits (138), Expect = 5e-09
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 678 IVLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDG 737
IV +DD S+ R ++ + L G+T NG E L L + K PD +L I MP MDG
Sbjct: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSXIRMPGMDG 62
Query: 738 YTFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSI 796
++++ + LP+I +T+ + + G +Y+ KP+ + +V+R+I
Sbjct: 63 LALLKQIKQ--RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119
>pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile (T87i)
pdb|1VLZ|B Chain B, Chey Mutant With Thr 87 Replaced By Ile (T87i)
Length = 128
Score = 57.4 bits (137), Expect = 6e-09
Identities = 34/110 (30%), Positives = 55/110 (49%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ V + K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1EHC| Structure Of Signal Transduction Protein Chey
Length = 128
Score = 57.0 bits (136), Expect = 8e-09
Identities = 34/110 (30%), Positives = 55/110 (49%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +D ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 8 LVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 57.0 bits (136), Expect = 8e-09
Identities = 34/110 (30%), Positives = 55/110 (49%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISXWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 56.6 bits (135), Expect = 1e-08
Identities = 34/110 (30%), Positives = 55/110 (49%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISAWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 56.6 bits (135), Expect = 1e-08
Identities = 34/110 (30%), Positives = 55/110 (49%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L + D ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 10 LVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 67
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 68 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 117
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 56.6 bits (135), Expect = 1e-08
Identities = 34/110 (30%), Positives = 55/110 (49%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +D ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 7 LVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 64
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 65 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 114
>pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 55.5 bits (132), Expect = 2e-08
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ V + K + + ++G + ++ KP++ L
Sbjct: 66 ELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATL 115
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 55.1 bits (131), Expect = 3e-08
Identities = 34/110 (30%), Positives = 54/110 (48%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L +DD ST R I+R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 66
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ + ++G + Y+ KP++ L
Sbjct: 67 ELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATL 116
>pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13 Replaced By Asn,
Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, Met 17
Replaced By Gly, Arg 18 Replaced By Lys, Arg 19 Replaced
By Ser, Ile 20 Replaced By Thr, Glu 35 Replaced By Asp
(D12g, D13n,F14g,S15g,M17g,R18k,R19s,I20t,E35d)
(Synchrotron X-Ray Diffraction)
Length = 128
Score = 52.8 bits (125), Expect = 2e-07
Identities = 30/110 (27%), Positives = 54/110 (48%), Gaps = 3/110 (2%)
Query: 680 LAIDDSSTDRAIIRKCLKPLGITLLE-ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
L + + T ++ +R LK LG +E A +G++ L L+ G ++ D MP MDG
Sbjct: 8 LVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQAGGY--GFVISDWNMPNMDGL 65
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
+R LP++ VT+ K + + ++G + Y+ KP++ L
Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 50.8 bits (120), Expect = 6e-07
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 679 VLAIDDSSTDRAIIRKCLKPLGITLLEAT--NGLEGLEMLKNGDKIPDAILVDIEMPKMD 736
VL++DDS+ R I+ + + + AT + L +++K + PD + +D+EMP+MD
Sbjct: 6 VLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMD 63
Query: 737 GYTFASEVRKYNKFKNLPLIAVTSRVTKTDR--MRGVESGMTEYITKPYSG 785
G F + K + + +P++ V+S K +R +E G +++TKP G
Sbjct: 64 GLDF---LEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLG 111
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 50.1 bits (118), Expect = 1e-06
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 670 SKNSPSDYIVLAIDDSSTDRAIIRKCLKPLGIT--LLEATNGLEGLEMLKNGDKI----- 722
S S ++L ++DS D ++++ LK I L+ +GL + L+ +
Sbjct: 2 SDESNPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPR 61
Query: 723 PDAILVDIEMPKMDGYTFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITK 781
P+ IL+D+ +PK DG +E+++ K +P++ +T+ + D + E + Y+TK
Sbjct: 62 PNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTK 120
>pdb|1TMY| Chey From Thermotoga Maritima (Apo-I)
pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|2TMY| Chey From Thermotoga Maritima (Apo-Ii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (Mg-Iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (Mg-Iv)
Length = 120
Score = 49.3 bits (116), Expect = 2e-06
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 679 VLAIDDSSTDRAIIRKCLKPLGITLL-EATNGLEGLEMLKNGDKIPDAILVDIEMPKMDG 737
VL +DD++ R +++ + G + EATNG E +E K + PD + +DI MP+M+G
Sbjct: 5 VLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK--ELKPDIVTMDITMPEMNG 62
Query: 738 YTFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPY 783
E+ K + N +I ++ + + +++G ++I KP+
Sbjct: 63 IDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPF 106
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 48.9 bits (115), Expect = 2e-06
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 670 SKNSPSDYIVLAIDDSSTDRAIIRKCLKPLGIT--LLEATNGLEGLEMLKNGDKI----- 722
S S ++L ++DS D ++++ LK I L+ +GL L+ +
Sbjct: 2 SDESNPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFLQQQGEYENSPR 61
Query: 723 PDAILVDIEMPKMDGYTFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITK 781
P+ IL+D+ +PK DG +E+++ K +P++ +T+ + D + E + Y+TK
Sbjct: 62 PNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTK 120
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
Length = 124
Score = 48.9 bits (115), Expect = 2e-06
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 679 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
+L +DD S R ++ + G +A NGL+ L+++ + PD +L+D+++P MDG
Sbjct: 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGI 63
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIKL 798
++ + +N+ +I +T+ E G + KP+ + + VK+ + L
Sbjct: 64 EILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121
Query: 799 EGD 801
+ +
Sbjct: 122 KSN 124
>pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 48.1 bits (113), Expect = 4e-06
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 679 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
+L +DD S R ++ + G +A NGL+ L+++ + PD +L+D+++P MDG
Sbjct: 4 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGI 61
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIKL 798
++ + +N+ +I +T+ E G + KP+ + + VK+ + L
Sbjct: 62 EILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 119
>pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein, 20
Structures
pdb|2FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
pdb|1NAT| Crystal Structure Of Spoof From Bacillus Subtilis
Length = 124
Score = 46.6 bits (109), Expect = 1e-05
Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 679 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
+L +DD R ++ + G +A NGL+ L+++ + PD +L+D+++P MDG
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGI 63
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIKL 798
++ + +N+ +I +T+ E G + KP+ + + VK+ + L
Sbjct: 64 EILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121
Query: 799 EGD 801
+ +
Sbjct: 122 KSN 124
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 679 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
V IDD R +++ L+ G T+ + E L L ++ DI MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGL 63
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIK 797
++ + +LP+I VT ++ ++ G ++I KP++ + L +R+ K
Sbjct: 64 ALFRKILALDP--DLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEK 120
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
Thermotoga Maritima
Length = 225
Score = 42.4 bits (98), Expect = 2e-04
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 679 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
VL ++D +I + LK T+ +G EG N D +++DI +P DG+
Sbjct: 5 VLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEPF--DVVILDIXLPVHDGW 62
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIKL 798
R+ N P++ +T+ R++G+ G +Y+ KP+ L V+ I+
Sbjct: 63 EILKSXRESGV--NTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRR 120
Query: 799 EGD 801
+ +
Sbjct: 121 KSE 123
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 42.4 bits (98), Expect = 2e-04
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 706 ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGYTFASEVRKYNKFKNLPLIAVTSRVTKT 765
A NG + L+ML+ +K PD +L+DI MP +DG +R F++ P + + + +
Sbjct: 34 AYNGQDCLQMLE--EKRPDILLLDIIMPHLDGLAVLERIRA--GFEHQPNVIMLTAFGQE 89
Query: 766 D-RMRGVESGMTEYITKPYSGEYLTTVVKR 794
D + VE G + +I KP+ E L +++
Sbjct: 90 DVTKKAVELGASYFILKPFDMENLAHHIRQ 119
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 42.4 bits (98), Expect = 2e-04
Identities = 29/117 (24%), Positives = 53/117 (44%), Gaps = 4/117 (3%)
Query: 679 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
V IDD R +++ L+ G T+ + E L L ++ DI MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGL 63
Query: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRS 795
++ + +LP+I VT ++ ++ G ++I KP++ + L +R+
Sbjct: 64 ALFRKILALDP--DLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRA 118
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 42.0 bits (97), Expect = 3e-04
Identities = 55/233 (23%), Positives = 94/233 (39%), Gaps = 18/233 (7%)
Query: 118 EIEEAVKQLQAITSQ------NLESAKERTTEAPQKENKEETKEEAKEENKENKAKAPTA 171
E EE +QLQA + +LE E A QK E+ + K + E+
Sbjct: 938 EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997
Query: 172 ENT--SSDNPLADEPDLDYANMSAEEVEA--EIERLLNKRQEADKERRAQKKQEAKPKQE 227
+N + + L +E D AEE E + +L NK + E + K+E K +QE
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Query: 228 VTPTK---ETPKAPKTETKAKAKADTEENKAPSIGVEQTVRVDVRRLDHLMNLIGELVLG 284
+ K E + E A+ +A E KA E+ ++ + RL+ + +
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Query: 285 KNRLIRIYSDVEERYDGEKFL-----EELNQVVSSISAVTTDLQLAVMKTRMQ 332
L SD++E + EK ++ + + A+ T+L+ + T Q
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170
Score = 33.5 bits (75), Expect = 0.095
Identities = 57/264 (21%), Positives = 116/264 (43%), Gaps = 56/264 (21%)
Query: 124 KQLQAITSQNLESAKERTTEAPQKENKEETKEEAKEENKENKAKAPTAENTSSDNPLADE 183
+++QA + L+ KER Q++ + E KE ++ + + K E ++ L E
Sbjct: 857 EEMQA-KDEELQRTKER-----QQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 184 PDLDYANMSA-----EEVEAEIERLLNKRQEADKERRAQKKQEAKPKQEVTPTKETPKAP 238
+ ++A EE+ E+E + + +E ++ +A+KK K +Q++ +E
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK---KMQQQMLDLEE----- 962
Query: 239 KTETKAKAKADTEENKAPSIGVEQTVRVDVRRLDHLMNLIGELVLGKNRLIRIYSDVEER 298
+ E + A+ + K + G + + D+ ++ N + +ER
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL----------------TKER 1006
Query: 299 YDGEKFLEELNQVVSSISAVTTDLQLAVMKTRMQPVGKVFNKFPRMVRDL---------S 349
K LEE +S +TT+ LA + + + + K+ NK M+ +L S
Sbjct: 1007 ----KLLEE------RVSDLTTN--LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054
Query: 350 RELGKSIELIIEGEETELDKSIVE 373
R+ + I+ +EGE ++L + I E
Sbjct: 1055 RQELEKIKRKLEGESSDLHEQIAE 1078
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL| The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM Narl
Length = 215
Score = 41.2 bits (95), Expect = 5e-04
Identities = 31/112 (27%), Positives = 61/112 (53%), Gaps = 6/112 (5%)
Query: 679 VLAIDDSSTDRAIIRKCLKPL-GITLL-EATNGLEGLEMLKNGDKIPDAILVDIEMPKMD 736
+L IDD R +++ + IT++ EA+NG +G+E+ ++ D PD IL+D+ MP M+
Sbjct: 8 ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMN 65
Query: 737 GYTFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYL 788
G ++R+ + + + +V++ + D + ++ G Y+ K E L
Sbjct: 66 GLETLDKLREKSLSGRIVVFSVSNH--EEDVVTALKRGADGYLLKDMEPEDL 115
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 39.7 bits (91), Expect = 0.001
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 706 ATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGYTFASEVRKYNKFKNLPLIAVTSRVTKT 765
A NG + L+ML+ +K PD +L+ I MP +DG +R F++ P + + + +
Sbjct: 34 AYNGQDCLQMLE--EKRPDILLLXIIMPHLDGLAVLERIRA--GFEHQPNVIMLTAFGQE 89
Query: 766 D-RMRGVESGMTEYITKPYSGEYLTTVVKR 794
D + VE G + +I KP+ E L +++
Sbjct: 90 DVTKKAVELGASYFILKPFDMENLAHHIRQ 119
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 34.7 bits (78), Expect = 0.043
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 27/115 (23%)
Query: 406 GKVQLSAYNEGNHIVIKISDDGKGLDPVMLKEKAIEKGVISERDAEGMSDREAFNLIFKP 465
G +++S+ E N ++ DDG G+ P K +F+P
Sbjct: 65 GWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKH------------------------LFQP 100
Query: 466 GFSTAKVVSNVSGRGVGMDVVKTNIEKLNGIIEIDSEV--GVGTTQKLKIPLTLA 518
F +SG G+G+ +V+ ++ NG++E+ + G+ L +P+T A
Sbjct: 101 -FVRGDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRA 154
>pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 31.6 bits (70), Expect = 0.36
Identities = 28/124 (22%), Positives = 50/124 (39%), Gaps = 12/124 (9%)
Query: 676 DYIVLAIDDSSTDRAIIRKCLKPLGITLL---EATNGLEGLEMLKNGDKIPDAILVDIEM 732
DY V +DD R + L G + A L ++NG ++ D+ M
Sbjct: 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG-----VLVTDLRM 57
Query: 733 PKMDGYTFASEVRKYNKFK-NLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTV 791
P M G +R K N+P I +T + +++G ++I KP+ +
Sbjct: 58 PDMSGVEL---LRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEA 114
Query: 792 VKRS 795
++R+
Sbjct: 115 IERA 118
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 30.4 bits (67), Expect = 0.81
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 94 IDLMKTLLVTIRDTGSDT-----NNGKENEIEEAVKQLQAITSQNLESAKERTTEAPQKE 148
+D ++TL I + D N + +E ++ V +++ + S + + +
Sbjct: 287 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELT 346
Query: 149 NKEETKEEAKEENKENKAKAPTAENTSSDNPLADE 183
++EE E+ +EE + + T+E D LADE
Sbjct: 347 DEEE--EDEEEEAESQSPEPETSEEEKEDKELADE 379
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 386
Score = 30.4 bits (67), Expect = 0.81
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 94 IDLMKTLLVTIRDTGSDT-----NNGKENEIEEAVKQLQAITSQNLESAKERTTEAPQKE 148
+D ++TL I + D N + +E ++ V +++ + S + + +
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELT 347
Query: 149 NKEETKEEAKEENKENKAKAPTAENTSSDNPLADE 183
++EE E+ +EE + + T+E D LADE
Sbjct: 348 DEEE--EDEEEEAESQSPEPETSEEEKEDKELADE 380
>pdb|1LNR|M Chain M, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 113
Score = 30.0 bits (66), Expect = 1.1
Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
Query: 394 LEERRKLNKPE--TGKVQLSAYNEGNHIVIKISDDGKGLDPVMLKEKAIEKG 443
L RRK+ +G+++LS Y HI +I DD +G A++ G
Sbjct: 10 LRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKSG 61
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/65 (27%), Positives = 34/65 (51%), Gaps = 1/65 (1%)
Query: 190 NMSAEEVEAEIERLLNKRQEADKERRAQKKQEAKPKQEVTPTKETPKAPKTETKAKAKAD 249
N +AEE A IE + +E KE+ + ++E + ++ K K K + + +A+AD
Sbjct: 11 NENAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLK-KKVKEEPEAEAD 69
Query: 250 TEENK 254
+E +
Sbjct: 70 LDEGR 74
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 29.3 bits (64), Expect = 1.8
Identities = 40/177 (22%), Positives = 80/177 (44%), Gaps = 19/177 (10%)
Query: 94 IDLMKTLLVTIRDTGSDTNNG-KENEIEEAVKQLQAITSQNLESAKERTTEAPQKENKEE 152
++L + L + G + ++G + + + A +Q IT E A+E+ A K KE
Sbjct: 77 VELKERLEXELIHLGEEYHDGIRRRKEQHATEQTAKIT----ELAREKQI-AELKALKES 131
Query: 153 TKEEAKEENKENKAKA----PTAENTSSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQ 208
++ K+ K+ +AK ++SD + + N +EV I+ L
Sbjct: 132 SESNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQERLKKEINNSHIQEVVQTIKLL----- 186
Query: 209 EADKERRAQKKQEAKPKQEVTPTKETPKAPKTETKAKAKADTEENKAPSIGVEQTVR 265
+K R Q+K E K + + +E K + + +A A+ + E+ K ++ V++ V+
Sbjct: 187 -TEKTARYQQKLEEKQAENLRAIQE--KEGQLQQEAVAEYE-EKLKTLTVEVQEXVK 239
>pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 28.9 bits (63), Expect = 2.3
Identities = 27/124 (21%), Positives = 49/124 (38%), Gaps = 12/124 (9%)
Query: 676 DYIVLAIDDSSTDRAIIRKCLKPLGITLL---EATNGLEGLEMLKNGDKIPDAILVDIEM 732
DY V +DD R + L G + A L ++NG ++ + M
Sbjct: 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG-----VLVTXLRM 57
Query: 733 PKMDGYTFASEVRKYNKFK-NLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTV 791
P M G +R K N+P I +T + +++G ++I KP+ +
Sbjct: 58 PDMSGVEL---LRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEA 114
Query: 792 VKRS 795
++R+
Sbjct: 115 IERA 118
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 28.9 bits (63), Expect = 2.3
Identities = 25/115 (21%), Positives = 51/115 (43%), Gaps = 21/115 (18%)
Query: 331 MQPVGKVFNKFPRMVRDLSRELGKSIELIIEGEETELDKS--IVEEIGDPLIHIIRNSCD 388
+ PV + + + + + G +I L I E + + + VE +G+ ++ N+C
Sbjct: 3 LHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGN----VLDNACK 58
Query: 389 HGIEPLEERRKLNKPETGKVQLSAYNEGNHIVIKISDDGKGLDPVMLKEKAIEKG 443
+ +E V++SA H+ I + DDG G+ P+ +E ++G
Sbjct: 59 YCLE--------------FVEISARQTDEHLYIVVEDDGPGI-PLSKREVIFDRG 98
>pdb|1PHN|B Chain B, Structure Of Phycocyanin From Cyanidium Caldarium At 1.65a
Resolution
Length = 172
Score = 28.1 bits (61), Expect = 4.0
Identities = 20/74 (27%), Positives = 37/74 (49%), Gaps = 5/74 (6%)
Query: 300 DGEKFLEELNQVVSSISAVTTDLQLAVMKTR---MQPVGKVF--NKFPRMVRDLSRELGK 354
+G K L+ +N++ S+ SA+ T+ A+ + +QP G + + +RD+ L
Sbjct: 33 EGNKRLDVVNRITSNASAIVTNAARALFSEQPQLIQPGGXAYTNRRMAACLRDMEIILRY 92
Query: 355 SIELIIEGEETELD 368
II G+ + LD
Sbjct: 93 VSYAIIAGDSSILD 106
>pdb|1FEW|A Chain A, Crystal Structure Of SmacDIABLO
Length = 184
Score = 28.1 bits (61), Expect = 4.0
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 112 NNGKENEIEEAVKQLQA-ITSQNLESAKERTTEAPQKENKEETKEEAKEENKENKAKAPT 170
N+ +E+E+ + + +A +TS++ E K TT E E A + + + T
Sbjct: 70 NSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQASI--T 127
Query: 171 AENTSSDNPLADEPDLDYANMSAEE--VEAEIERLLNKRQEADKERRAQKKQEAKPKQE 227
A N L E ++ + AE EA+IE L K QE + E RA+ +QEA +++
Sbjct: 128 ARNHIQLVKLQVE-EVHQLSRKAETKLAEAQIEELKQKTQE-EGEERAESEQEAYLRED 184
>pdb|1BUC|A Chain A, Butyryl-Coa Dehydrogenase (Bcad) (Bacterial Short-Chain
Acyl-Coa Dehydrogenase) (E.C.1.3.99.2) Complexed With
Fad And Acetoacetyl-Coenzyme A
pdb|1BUC|B Chain B, Butyryl-Coa Dehydrogenase (Bcad) (Bacterial Short-Chain
Acyl-Coa Dehydrogenase) (E.C.1.3.99.2) Complexed With
Fad And Acetoacetyl-Coenzyme A
Length = 383
Score = 27.7 bits (60), Expect = 5.2
Identities = 22/92 (23%), Positives = 39/92 (41%), Gaps = 2/92 (2%)
Query: 445 ISERDAEGMSDREAFNLIFKPGFSTAKVVSNVSGRGVGMDVVKTNIEKLNGIIEIDSEVG 504
++ERD +G+ D+E + + G + A G G V + I + + + D+ G
Sbjct: 28 VTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDA--G 85
Query: 505 VGTTQKLKIPLTLAIIQALLVGVQEEYYAIPL 536
V T + L I Q+E + +PL
Sbjct: 86 VAITLSATVSLCANPIWQFGTEAQKEKFLVPL 117
>pdb|1KQ3|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Tm0423) From
Thermotoga Maritima At 1.5 A Resolution
Length = 376
Score = 27.7 bits (60), Expect = 5.2
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 490 IEKLNGIIEIDSEVGVGTTQKLKIPLTLAIIQALLVGVQEEYYAIPLSSVLETVRISQDE 549
IE+L+G++E +++V VG + TL +A+ +++ +P + + +
Sbjct: 84 IERLSGLVEEETDVVVG----IGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSV 139
Query: 550 IYTVDGKSVLRLRDEVLSLVRLSDIFKVDAILESNSDVYVVIIGLAD 596
IYT +G+ L L R D+ VD + + + ++ G+ D
Sbjct: 140 IYTPNGEF-----KRYLFLPRNPDVVLVDTEIVAKAPARFLVAGMGD 181
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 27.3 bits (59), Expect = 6.8
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 133 NLESAKERTTEAPQKENKEETKEEAKEENKENKAKAPTAENTSSDNPLADEPDL 186
NL++ K KE+KE+ KE KE+ KE K A E +N L ++ D+
Sbjct: 53 NLQNLKITDKVEDFKEDKEKAKEWGKEKEKEWKLTA--TEKGKMNNFLDNKNDI 104
>pdb|1IMU|A Chain A, Solution Structure Of Hi0257, A Ribosome Binding Protein
Length = 107
Score = 27.3 bits (59), Expect = 6.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 195 EVEAEIERLLNKRQEADKERRAQKK 219
EVE ++ER LNK Q + RRA ++
Sbjct: 76 EVEEKLERQLNKLQHKSESRRADER 100
>pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
Length = 367
Score = 27.3 bits (59), Expect = 6.8
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 658 ITTLMNESENTKSKNSPSDYIVLAIDDSSTDRAIIRKCLKPLGITLLEATN 708
+T ++ E + + + P+ + +A D +S D+ I +K LGI L TN
Sbjct: 205 LTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTN 255
>pdb|5REQ|A Chain A, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|5REQ|C Chain C, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
Length = 727
Score = 26.9 bits (58), Expect = 8.9
Identities = 34/162 (20%), Positives = 65/162 (39%), Gaps = 30/162 (18%)
Query: 232 KETPKAPKTETKAKAKADTEENKAPSIGV-----EQTVRVDVRRLDHLMNLIGELVLGKN 286
K PK E A+ +A + + P IGV E +DV ++D+ L + K
Sbjct: 438 KGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQ----KA 493
Query: 287 RLIRIYSDVEERYDGEKFLEELNQVVSSIS--------------AVTTDLQLAVMKTRMQ 332
+L+++ ++ D EK L+++ + + +A +
Sbjct: 494 KLVKLRAE----RDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSD 549
Query: 333 PVGKVFNKFPRMVRDLSRELGKSIELIIEGEETELDKSIVEE 374
+ KVF ++ +R +S K ++ E EE + +VEE
Sbjct: 550 ALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEA---RELVEE 588
>pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|C Chain C, Methylmalonyl-Coa Mutase H244a Mutant
Length = 727
Score = 26.9 bits (58), Expect = 8.9
Identities = 34/162 (20%), Positives = 65/162 (39%), Gaps = 30/162 (18%)
Query: 232 KETPKAPKTETKAKAKADTEENKAPSIGV-----EQTVRVDVRRLDHLMNLIGELVLGKN 286
K PK E A+ +A + + P IGV E +DV ++D+ L + K
Sbjct: 438 KGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQ----KA 493
Query: 287 RLIRIYSDVEERYDGEKFLEELNQVVSSIS--------------AVTTDLQLAVMKTRMQ 332
+L+++ ++ D EK L+++ + + +A +
Sbjct: 494 KLVKLRAE----RDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSD 549
Query: 333 PVGKVFNKFPRMVRDLSRELGKSIELIIEGEETELDKSIVEE 374
+ KVF ++ +R +S K ++ E EE + +VEE
Sbjct: 550 ALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEA---RELVEE 588
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 26.9 bits (58), Expect = 8.9
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 751 KNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRS 795
+N ++ SR+ T ++ V+S Y+ +P+ EY TVV +S
Sbjct: 195 QNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWK-EYSRTVVMQS 238
>pdb|1AVO|B Chain B, Proteasome Activator Reg(Alpha)
pdb|1AVO|D Chain D, Proteasome Activator Reg(Alpha)
pdb|1AVO|F Chain F, Proteasome Activator Reg(Alpha)
pdb|1AVO|H Chain H, Proteasome Activator Reg(Alpha)
pdb|1AVO|J Chain J, Proteasome Activator Reg(Alpha)
pdb|1AVO|L Chain L, Proteasome Activator Reg(Alpha)
pdb|1AVO|N Chain N, Proteasome Activator Reg(Alpha)
Length = 140
Score = 26.9 bits (58), Expect = 8.9
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 6/72 (8%)
Query: 302 EKFLEELNQVVSSISAVTTDLQLAVMKTRMQPVGKVFNKFPRMVRDLSRELGKSIELIIE 361
++ E+ V+ ++ VTT LQL + P + N F V++ EL S+ +E
Sbjct: 13 QRLKPEIKDVIEQLNLVTTWLQLQI------PRIEDGNNFGVAVQEKVFELMTSLHTKLE 66
Query: 362 GEETELDKSIVE 373
G T++ K E
Sbjct: 67 GFHTQISKYFSE 78
>pdb|6REQ|A Chain A, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|6REQ|C Chain C, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|4REQ|A Chain A, Methylmalonyl-Coa Mutase Substrate Complex
pdb|4REQ|C Chain C, Methylmalonyl-Coa Mutase Substrate Complex
pdb|1REQ|A Chain A, Methylmalonyl-Coa Mutase
pdb|1REQ|C Chain C, Methylmalonyl-Coa Mutase
pdb|2REQ|A Chain A, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|2REQ|C Chain C, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|3REQ|A Chain A, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
Quality Structure)
pdb|7REQ|A Chain A, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|C Chain C, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
Length = 727
Score = 26.9 bits (58), Expect = 8.9
Identities = 34/162 (20%), Positives = 65/162 (39%), Gaps = 30/162 (18%)
Query: 232 KETPKAPKTETKAKAKADTEENKAPSIGV-----EQTVRVDVRRLDHLMNLIGELVLGKN 286
K PK E A+ +A + + P IGV E +DV ++D+ L + K
Sbjct: 438 KGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQ----KA 493
Query: 287 RLIRIYSDVEERYDGEKFLEELNQVVSSIS--------------AVTTDLQLAVMKTRMQ 332
+L+++ ++ D EK L+++ + + +A +
Sbjct: 494 KLVKLRAE----RDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSD 549
Query: 333 PVGKVFNKFPRMVRDLSRELGKSIELIIEGEETELDKSIVEE 374
+ KVF ++ +R +S K ++ E EE + +VEE
Sbjct: 550 ALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEA---RELVEE 588
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.132 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,281,120
Number of Sequences: 13198
Number of extensions: 180385
Number of successful extensions: 511
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 72
length of query: 803
length of database: 2,899,336
effective HSP length: 96
effective length of query: 707
effective length of database: 1,632,328
effective search space: 1154055896
effective search space used: 1154055896
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)