BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645021|ref|NP_207191.1| chemotaxis protein (cheV)
[Helicobacter pylori 26695]
(311 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t >gi... 71 1e-13
pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp... 70 2e-13
pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant... 69 5e-13
pdb|1YMV| Signal Transduction Protein Chey Mutant With Ph... 69 5e-13
pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t >gi... 69 5e-13
pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyper... 69 5e-13
pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted,... 69 7e-13
pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures) 69 7e-13
pdb|3CHY| CheY >gi|13096520|pdb|1FFG|A Chain A, Chey-Bind... 69 7e-13
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotax... 69 7e-13
pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2CHF| ... 68 1e-12
pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile... 68 2e-12
pdb|5CHY| Structure Of Chemotaxis Protein Chey 67 3e-12
pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C) 66 4e-12
pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Me... 66 4e-12
pdb|1EHC| Structure Of Signal Transduction Protein Chey 66 4e-12
pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Mo... 66 4e-12
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey >g... 66 6e-12
pdb|1E6M|A Chain A, Two-Component Signal Transduction Syste... 66 6e-12
pdb|1E6K|A Chain A, Two-Component Signal Transduction Syste... 66 6e-12
pdb|1E6L|A Chain A, Two-Component Signal Transduction Syste... 66 6e-12
pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13... 64 2e-11
pdb|1K0S|A Chain A, Solution Structure Of The Chemotaxis Pr... 55 1e-08
pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver ... 43 4e-05
pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylat... 41 2e-04
pdb|1NTR| Solution Structure Of The N-Terminal Receiver D... 41 2e-04
pdb|1A2O|A Chain A, Structural Basis For Methylesterase Che... 40 3e-04
pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domai... 39 8e-04
pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound R... 38 0.002
pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound F... 35 0.014
pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial P... 33 0.032
pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia C... 33 0.054
pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprP... 31 0.16
pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RE... 30 0.27
pdb|1F89|A Chain A, Crystal Structure Of Yeast Hypothetical... 27 3.0
pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And N... 26 5.1
pdb|2CRK|A Chain A, Muscle Creatine Kinase 26 6.7
pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And N... 25 8.7
pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Syntheta... 25 8.7
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 71.2 bits (173), Expect = 1e-13
Identities = 47/132 (35%), Positives = 72/132 (53%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD+ T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 1 ELKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 50
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 51 ISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAA 110
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 111 TLEEKLNKIFEK 122
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 70.5 bits (171), Expect = 2e-13
Identities = 47/132 (35%), Positives = 72/132 (53%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 54
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ D + + + GA Y+VK F A
Sbjct: 55 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAA 114
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 115 TLEEKLNKIFEK 126
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 69.3 bits (168), Expect = 5e-13
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 6 ELKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 55
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 56 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 115
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 116 TLEEKLNKIFEK 127
>pdb|1YMV| Signal Transduction Protein Chey Mutant With Phe 14 Replaced By
Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly
Length = 129
Score = 69.3 bits (168), Expect = 5e-13
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 5 ELKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 54
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 55 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 115 TLEEKLNKIFEK 126
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 69.3 bits (168), Expect = 5e-13
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD+ T R+ +N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 1 ELKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 50
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 51 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 110
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 111 TLEEKLNKIFEK 122
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 69.3 bits (168), Expect = 5e-13
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 54 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted, And Ala 2 Replaced
By Ser (Del(M1),Ins(R1),A2s) (Nmr, 20 Structures)
Length = 129
Score = 68.9 bits (167), Expect = 7e-13
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 54
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 55 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 115 TLEEKLNKIFEK 126
>pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures)
Length = 128
Score = 68.9 bits (167), Expect = 7e-13
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 54 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|3CHY| CheY
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1CHN| Chey Complexed With Mg2+ In The Active Site
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
Length = 128
Score = 68.9 bits (167), Expect = 7e-13
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 54 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
Length = 129
Score = 68.9 bits (167), Expect = 7e-13
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 54
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 55 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 114
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 115 TLEEKLNKIFEK 126
>pdb|2CHE| Chey Complexed With Mg2+
pdb|2CHF| Chey
Length = 128
Score = 68.2 bits (165), Expect = 1e-12
Identities = 46/132 (34%), Positives = 69/132 (51%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ FI
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA----------GGFGFI 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 54 ISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile (T87i)
pdb|1VLZ|B Chain B, Chey Mutant With Thr 87 Replaced By Ile (T87i)
Length = 128
Score = 67.8 bits (164), Expect = 2e-12
Identities = 47/132 (35%), Positives = 70/132 (52%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ + + A + GA Y+VK F A
Sbjct: 54 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|5CHY| Structure Of Chemotaxis Protein Chey
Length = 128
Score = 67.0 bits (162), Expect = 3e-12
Identities = 46/132 (34%), Positives = 71/132 (52%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA ++VK F A
Sbjct: 54 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C)
Length = 128
Score = 66.2 bits (160), Expect = 4e-12
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ FI
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA----------GGFGFI 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
I D MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 54 ICDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 66.2 bits (160), Expect = 4e-12
Identities = 46/132 (34%), Positives = 70/132 (52%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ + +PV+ ++ + A + GA Y+VK F A
Sbjct: 54 ISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|1EHC| Structure Of Signal Transduction Protein Chey
Length = 128
Score = 66.2 bits (160), Expect = 4e-12
Identities = 46/132 (34%), Positives = 70/132 (52%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +D T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 54 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 66.2 bits (160), Expect = 4e-12
Identities = 46/132 (34%), Positives = 70/132 (52%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
IS MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 54 ISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 65.9 bits (159), Expect = 6e-12
Identities = 46/132 (34%), Positives = 70/132 (52%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ + + A + GA ++VK F A
Sbjct: 54 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 65.9 bits (159), Expect = 6e-12
Identities = 46/132 (34%), Positives = 70/132 (52%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +DD T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
IS MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 54 ISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 65.9 bits (159), Expect = 6e-12
Identities = 46/132 (34%), Positives = 70/132 (52%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L + D T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 6 ELKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 55
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 56 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 115
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 116 TLEEKLNKIFEK 127
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 65.9 bits (159), Expect = 6e-12
Identities = 46/132 (34%), Positives = 70/132 (52%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L +D T R+ ++N L +LGF+ + EA DG D LNKL+ YG F+
Sbjct: 3 ELKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYG--------FV 52
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 53 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 112
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 113 TLEEKLNKIFEK 124
>pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13 Replaced By Asn,
Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, Met 17
Replaced By Gly, Arg 18 Replaced By Lys, Arg 19 Replaced
By Ser, Ile 20 Replaced By Thr, Glu 35 Replaced By Asp
(D12g, D13n,F14g,S15g,M17g,R18k,R19s,I20t,E35d)
(Synchrotron X-Ray Diffraction)
Length = 128
Score = 63.9 bits (154), Expect = 2e-11
Identities = 44/132 (33%), Positives = 70/132 (52%), Gaps = 12/132 (9%)
Query: 180 EGEVLFLDDSKTARKTLKNHLSKLGFS-ITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFI 238
E + L + + T + T++N L +LGF+ + +A DG D LNKL+ YG F+
Sbjct: 4 ELKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQA--GGYG--------FV 53
Query: 239 ISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAE 297
ISD MP MDG L ++ D + +PV+ ++ + A + GA Y+VK F A
Sbjct: 54 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113
Query: 298 KFTEEISKILDK 309
E+++KI +K
Sbjct: 114 TLEEKLNKIFEK 125
>pdb|1K0S|A Chain A, Solution Structure Of The Chemotaxis Protein Chew From The
Thermophilic Organism Thermotoga Maritima
Length = 151
Score = 55.1 bits (131), Expect = 1e-08
Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 14/156 (8%)
Query: 11 LSEIELVDFRIYGMQEGVPYEGIYGINVAKVQEIIPMPTLFEYPTNLDYIIGVFDLRSII 70
L E E++ F I E +V ++ +I + P + ++ GV +LR I
Sbjct: 8 LKEFEVLSFEID--------EQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRI 59
Query: 71 IPLIDLAKWIGIIPDKSKENEKIVIITEFNNVKMGFLVHSARRIRRISWKDVEPASFSAS 130
IP+++LAK +GI D+ K K +I+ +V++GFLV + RI+ ++ + S
Sbjct: 60 IPVVNLAKILGISFDEQK--MKSIIVARTKDVEVGFLVDRVLGVLRITENQLDLTNVSDK 117
Query: 131 NSINKENITGTTRIENDKTLLILDLESILDDLKLNE 166
+ + T + + ++ LD++ I++++ + E
Sbjct: 118 FGKKSKGLVKT----DGRLIIYLDIDKIIEEITVKE 149
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 43.1 bits (100), Expect = 4e-05
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 182 EVLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFIISD 241
++L +DD ++ L+ +L + G+ + A DGE+ L K E + I+ D
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE----------TEKPDLIVLD 54
Query: 242 VEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKFT 300
V +PK+DG +L++ P++ ++ + + E+GA Y+ K F +
Sbjct: 55 VMLPKLDGIEVCKQLRQQK--LMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVN 112
Query: 301 EEISKILDKN 310
+ IL ++
Sbjct: 113 ARVKAILRRS 122
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 41.2 bits (95), Expect = 2e-04
Identities = 38/119 (31%), Positives = 57/119 (46%), Gaps = 13/119 (10%)
Query: 181 GEVLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFIIS 240
G V +DD + R L+ L+ G + T E+G L L K D L +S
Sbjct: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTF---ENGNEVLAALASKTPDVL-------LS 53
Query: 241 DVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEK 298
D+ MP MDG L ++++ R +PVI ++ D +A A + GA YL K FD ++
Sbjct: 54 DIRMPGMDGLALLKQIKQ--RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1NTR| Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 41.2 bits (95), Expect = 2e-04
Identities = 38/119 (31%), Positives = 57/119 (46%), Gaps = 13/119 (10%)
Query: 181 GEVLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFIIS 240
G V +DD + R L+ L+ G + T E+G L L K D L +S
Sbjct: 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTF---ENGNEVLAALASKTPDVL-------LS 53
Query: 241 DVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEK 298
D+ MP MDG L ++++ R +PVI ++ D +A A + GA YL K FD ++
Sbjct: 54 DIRMPGMDGLALLKQIKQ--RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 40.0 bits (92), Expect = 3e-04
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 183 VLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFIISDV 242
VL +DDS R+ + ++ S E V L KK+ D+ + DV
Sbjct: 6 VLSVDDSALMRQIMTEIINS--HSDMEMVATAPDPLVARDLIKKFNPDV------LTLDV 57
Query: 243 EMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYS--AERAKEMGAVAYLVK 293
EMP+MDG FL KL R +PV+ SS+ S RA E+GA+ ++ K
Sbjct: 58 EMPRMDGLDFLEKLM---RLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTK 107
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 38.9 bits (89), Expect = 8e-04
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 183 VLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFIISDV 242
V +DD + RK ++ L GF+++ + L L F +ISD+
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADF----------AGIVISDI 55
Query: 243 EMPKMDGYHFLFK-LQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKFT 300
MP MDG K L DP +P+I + D A +A + GA ++ K F A++
Sbjct: 56 RMPGMDGLALFRKILALDPD---LPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLV 112
Query: 301 EEISKILDK 309
+ + +K
Sbjct: 113 QSARRAEEK 121
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 37.7 bits (86), Expect = 0.002
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 183 VLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFIISDV 242
V +DD + RK ++ L GF+++ + L L F +ISD+
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADF----------AGIVISDI 55
Query: 243 EMPKMDGYHFLFK-LQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKFT 300
MP MDG K L DP +P+I + D A +A + GA ++ K F A++
Sbjct: 56 RMPGMDGLALFRKILALDPD---LPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLV 112
Query: 301 E 301
+
Sbjct: 113 Q 113
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 34.7 bits (78), Expect = 0.014
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 183 VLFLDDSKTARKTLKNHLSKLGFSITEAVDGE-----DGLNKLEMLFKKYGDDLRKHLKF 237
+L ++DSK + ++ L T +D E DGL + L ++ +
Sbjct: 11 ILLVEDSKADSRLVQEVLK------TSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNL 64
Query: 238 IISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK 293
I+ D+ +PK DG L +++++P IPV+ ++ + + E+ YL K
Sbjct: 65 ILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTK 120
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 33.5 bits (75), Expect = 0.032
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 183 VLFLDDSKTARKTLKNHLSKLGFSITEAVDGE-----DGLNKLEMLFKKYGDDLRKHLKF 237
+L ++DSK + ++ L T +D E DGL L ++ +
Sbjct: 11 ILLVEDSKADSRLVQEVLK------TSTIDHELIILRDGLAAXAFLQQQGEYENSPRPNL 64
Query: 238 IISDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK 293
I+ D+ +PK DG L +++++P IPV+ ++ + + E+ YL K
Sbjct: 65 ILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTK 120
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
Length = 127
Score = 32.7 bits (73), Expect = 0.054
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 183 VLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFIISDV 242
+L ++D R+ + L + GF EA D + +N+L + + D I+ D
Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN---EPWPD-------LILLDW 54
Query: 243 EMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKFTE 301
+P G F+ L+++ IPV+ ++ + R E GA Y+ K F ++
Sbjct: 55 MLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVA 114
Query: 302 EISKIL 307
I ++
Sbjct: 115 RIKAVM 120
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
Thermotoga Maritima
Length = 225
Score = 31.2 bits (69), Expect = 0.16
Identities = 27/130 (20%), Positives = 52/130 (39%), Gaps = 13/130 (10%)
Query: 183 VLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFIISDV 242
VL ++D + + L K F++ DGE+G L + +I D+
Sbjct: 5 VLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXA----------LNEPFDVVILDI 54
Query: 243 EMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKFTE 301
+P DG+ L ++ PV+ +++ D + GA YL K FD +
Sbjct: 55 XLPVHDGWEILKSXRESG--VNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIA 112
Query: 302 EISKILDKNA 311
+ ++ + +
Sbjct: 113 RVRALIRRKS 122
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL| The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM Narl
Length = 215
Score = 30.4 bits (67), Expect = 0.27
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 183 VLFLDDSKTARKTLKNHLSKLGFSIT---EAVDGEDGLNKLEMLFKKYGDDLRKHLKFII 239
+L +DD R +K +S + IT EA +GE G+ E L DL I+
Sbjct: 8 ILLIDDHPMLRTGVKQLIS-MAPDITVVGEASNGEQGIELAESL----DPDL------IL 56
Query: 240 SDVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVKFDAEKF 299
D+ MP M+G L KL++ I V+F+ S + A + GA YL+K D E
Sbjct: 57 LDLNMPGMNGLETLDKLREKSLSGRI-VVFSVSNHEE-DVVTALKRGADGYLLK-DME-- 111
Query: 300 TEEISKILDKNA 311
E++ K L + A
Sbjct: 112 PEDLLKALHQAA 123
>pdb|1F89|A Chain A, Crystal Structure Of Yeast Hypothetical Protein, Yl85
pdb|1F89|B Chain B, Crystal Structure Of Yeast Hypothetical Protein, Yl85
Length = 291
Score = 26.9 bits (58), Expect = 3.0
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 174 THKERFEGEVLFLDDSKTARKTLKNHLSK-----LGFSITEAVDGEDGLNKLEMLFKKYG 228
T + R EV+ + T+ + L N +K +G +I E D + ++F + G
Sbjct: 61 TDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDG 120
Query: 229 DDLRKHLKFIISDVEMPKMDGYH 251
+ KH K + DV++P +H
Sbjct: 121 KLIDKHRKVHLFDVDIPNGISFH 143
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
Length = 416
Score = 26.2 bits (56), Expect = 5.1
Identities = 21/89 (23%), Positives = 42/89 (46%), Gaps = 3/89 (3%)
Query: 82 IIPDKSKENEKIVIITEFNNVKMGFLVHSARRIRR--ISWKDVEPASFSASNSINKENIT 139
++ ++ ++ ++ +I E + ++ L A+ R IS +D EP + + N I N
Sbjct: 173 LLGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSED-EPFNLRSRNPIYSNNFG 231
Query: 140 GTTRIENDKTLLILDLESILDDLKLNEDA 168
I +K + DL+ L + +NE A
Sbjct: 232 KFFEITPEKNPQLRDLDIFLSSVDINEGA 260
>pdb|2CRK|A Chain A, Muscle Creatine Kinase
Length = 381
Score = 25.8 bits (55), Expect = 6.7
Identities = 30/114 (26%), Positives = 48/114 (41%), Gaps = 20/114 (17%)
Query: 216 GLNKLEMLFKKYGDDL--RKHLKFII---SDVEMPKMDGYHF-LFKLQKDPRFAYI---- 265
GL K+E +FKK G +HL +++ S++ G H L L K P+F I
Sbjct: 256 GLQKIEEIFKKAGHPFMWNEHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPKFEEILTRL 315
Query: 266 ------PVIFNS----SICDNYSAERAKEMGAVAYLVKFDAEKFTEEISKILDK 309
+F++ S+ D +A+R + D K E+ K L+K
Sbjct: 316 RLQKRGTSVFDTAAVGSVFDISNADRLGSSEVEQVQLVVDGVKLMVEMEKKLEK 369
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 25.4 bits (54), Expect = 8.7
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 85 DKSKENEKIVIITEFNNVKMGFLVHSARRIRR--ISWKDVEPASFSASNSINKENITGTT 142
++ ++ ++ +I E + ++ L A+ R IS +D EP + + N I N
Sbjct: 176 EEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSED-EPFNLRSRNPIYSNNFGKFF 234
Query: 143 RIENDKTLLILDLESILDDLKLNEDA 168
I +K + DL+ L + +NE A
Sbjct: 235 EITPEKNPQLRDLDIFLSSVDINEGA 260
>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ2|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 443
Score = 25.4 bits (54), Expect = 8.7
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 113 RIRRISWKDVEPASFSASNSINKENITGTTRIENDKTLLILDLESILDDLKLNEDAKNAK 172
R RR W D+ FS I G + K LD+ S L++++L K +
Sbjct: 321 RPRRCGWLDIVALKFSCQ-------INGFASLNLTK----LDVLSDLNEIQLGVAYKRSD 369
Query: 173 DTHKERFEGEVLFLDD 188
T + F G++ L++
Sbjct: 370 GTPVKSFPGDLRLLEE 385
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,728,068
Number of Sequences: 13198
Number of extensions: 71723
Number of successful extensions: 178
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 39
length of query: 311
length of database: 2,899,336
effective HSP length: 88
effective length of query: 223
effective length of database: 1,737,912
effective search space: 387554376
effective search space used: 387554376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)