BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645022|ref|NP_207192.1| hypothetical protein
[Helicobacter pylori 26695]
(252 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear R... 28 0.78
pdb|1TPV|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 28 1.0
pdb|1TPC|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1)... 28 1.0
pdb|1TPW|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 28 1.0
pdb|1TPU|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 28 1.0
pdb|1TPB|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1)... 28 1.0
pdb|8TIM|A Chain A, Triose Phosphate Isomerase >gi|4558247|... 28 1.0
pdb|1TIM|A Chain A, Triose Phosphate Isomerase (E.C.5.3.1.1... 28 1.3
pdb|2PNA| Phosphatidylinositol 3-Kinase (E.C.2.7.1.137) (... 26 3.9
pdb|1II7|A Chain A, Crystal Structure Of P. Furiosus Mre11 ... 26 5.0
pdb|1HTI|A Chain A, Triosephosphate Isomerase (Tim) (E.C.5.... 25 6.6
pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of Th... 25 6.6
pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Repl... 25 8.6
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 28.5 bits (62), Expect = 0.78
Identities = 14/37 (37%), Positives = 20/37 (53%)
Query: 158 LFKKLIYQKPVRLWELEPKELQSFIEKRLKAYQNYIK 194
LF + P R W LEP+++Q EK A Q+ I+
Sbjct: 161 LFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQ 197
>pdb|1TPV|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His 95
Replaced By Asn And Ser 96 Replaced By Pro (H95n,S96p)
Complexed With Phosphoglycolohydroxamate
pdb|1TPV|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His 95
Replaced By Asn And Ser 96 Replaced By Pro (H95n,S96p)
Complexed With Phosphoglycolohydroxamate
Length = 247
Score = 28.1 bits (61), Expect = 1.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 210 HLKSGAKIPLNTPIYCPLPSFYYEQSLFKVSSSVLEPSQN 249
H +GAK+ +T + C PS Y + + K+ + + +QN
Sbjct: 25 HTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQN 64
>pdb|1TPC|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Ser 96
Replaced By Pro And Glu 165 Replaced By Asp (S96p,E165d)
Complexed With Phosphoglycolohydroxamate
pdb|1TPC|2 Chain 2, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Ser 96
Replaced By Pro And Glu 165 Replaced By Asp (S96p,E165d)
Complexed With Phosphoglycolohydroxamate
Length = 247
Score = 28.1 bits (61), Expect = 1.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 210 HLKSGAKIPLNTPIYCPLPSFYYEQSLFKVSSSVLEPSQN 249
H +GAK+ +T + C PS Y + + K+ + + +QN
Sbjct: 25 HTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQN 64
>pdb|1TPW|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Ser 96
Replaced By Pro (S96p) Complexed With
Phosphoglycolohydroxamate
pdb|1TPW|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Ser 96
Replaced By Pro (S96p) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 28.1 bits (61), Expect = 1.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 210 HLKSGAKIPLNTPIYCPLPSFYYEQSLFKVSSSVLEPSQN 249
H +GAK+ +T + C PS Y + + K+ + + +QN
Sbjct: 25 HTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQN 64
>pdb|1TPU|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His 95
Replaced By Asn (H95n) Complexed With
Phosphoglycolohydroxamate
pdb|1TPU|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His 95
Replaced By Asn (H95n) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 28.1 bits (61), Expect = 1.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 210 HLKSGAKIPLNTPIYCPLPSFYYEQSLFKVSSSVLEPSQN 249
H +GAK+ +T + C PS Y + + K+ + + +QN
Sbjct: 25 HTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQN 64
>pdb|1TPB|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Glu
165 Replaced By Asp (E165d) Complexed With
Phosphoglycolohydroxamate
pdb|1TPB|2 Chain 2, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Glu
165 Replaced By Asp (E165d) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 28.1 bits (61), Expect = 1.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 210 HLKSGAKIPLNTPIYCPLPSFYYEQSLFKVSSSVLEPSQN 249
H +GAK+ +T + C PS Y + + K+ + + +QN
Sbjct: 25 HTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQN 64
>pdb|8TIM|A Chain A, Triose Phosphate Isomerase
pdb|8TIM|B Chain B, Triose Phosphate Isomerase
pdb|1TPH|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1) Complexed With
Phosphoglycolohydroxamate
pdb|1TPH|2 Chain 2, Triosephosphate Isomerase (E.C.5.3.1.1) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 28.1 bits (61), Expect = 1.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 210 HLKSGAKIPLNTPIYCPLPSFYYEQSLFKVSSSVLEPSQN 249
H +GAK+ +T + C PS Y + + K+ + + +QN
Sbjct: 25 HTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQN 64
>pdb|1TIM|A Chain A, Triose Phosphate Isomerase (E.C.5.3.1.1)
pdb|1TIM|B Chain B, Triose Phosphate Isomerase (E.C.5.3.1.1)
Length = 247
Score = 27.7 bits (60), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 210 HLKSGAKIPLNTPIYCPLPSFYYEQSLFKVSSSVLEPSQN 249
H GAK+ +T + C PS Y + + K+ + + +QN
Sbjct: 25 HTLDGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQN 64
>pdb|2PNA| Phosphatidylinositol 3-Kinase (E.C.2.7.1.137) (N-Terminal Sh2
Domain Of P85-Alpha Subunit) (Nmr, 22 Structures)
pdb|2PNB| Phosphatidylinositol 3-Kinase (E.C.2.7.1.137) (N-Terminal Sh2
Domain Of P85-Alpha Subunit) (Nmr, Minimized Average
Structure)
Length = 104
Score = 26.2 bits (56), Expect = 3.9
Identities = 12/42 (28%), Positives = 22/42 (51%)
Query: 72 SEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNK 113
+++ ++F+ +G + FS FNS V + L QY+ K
Sbjct: 51 NKLIKIFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPK 92
>pdb|1II7|A Chain A, Crystal Structure Of P. Furiosus Mre11 With Manganese
And Damp
pdb|1II7|B Chain B, Crystal Structure Of P. Furiosus Mre11 With Manganese
And Damp
Length = 333
Score = 25.8 bits (55), Expect = 5.0
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 41 VFFMGDIFHVLVGYLPLDKEQQKIIDLIHALSEIS-QVFYFEGNHDFSMR 89
+ GD+FH P +K I L+ E S VF EGNHD + R
Sbjct: 44 ILIAGDLFH---SSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQR 90
>pdb|1HTI|A Chain A, Triosephosphate Isomerase (Tim) (E.C.5.3.1.1) Complexed
With 2-Phosphoglycolic Acid
pdb|1HTI|B Chain B, Triosephosphate Isomerase (Tim) (E.C.5.3.1.1) Complexed
With 2-Phosphoglycolic Acid
Length = 248
Score = 25.4 bits (54), Expect = 6.6
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 213 SGAKIPLNTPIYCPLPSFYYEQSLFKVSSSVLEPSQN 249
+ AK+P +T + C P+ Y + + K+ + +QN
Sbjct: 29 NAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQN 65
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 25.4 bits (54), Expect = 6.6
Identities = 12/38 (31%), Positives = 19/38 (49%)
Query: 76 QVFYFEGNHDFSMRFVFNSKVMVFERQNQPVLFQYDNK 113
++F+ +G + FS FNS V + L QY+ K
Sbjct: 62 KIFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPK 99
>pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|B Chain B, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|C Chain C, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|D Chain D, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|E Chain E, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|F Chain F, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|G Chain G, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|H Chain H, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|I Chain I, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|J Chain J, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|K Chain K, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|L Chain L, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
Length = 279
Score = 25.0 bits (53), Expect = 8.6
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MLETYALKNGAVFISDAHFLPKS-PHLIHTLKELLSAKPPQVFFMGDIFHVLVGYLP 56
+LE L G V A P + H +H L LSA+ Q G + L+G LP
Sbjct: 60 LLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLP 116
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.142 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,441,491
Number of Sequences: 13198
Number of extensions: 58811
Number of successful extensions: 216
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 13
length of query: 252
length of database: 2,899,336
effective HSP length: 86
effective length of query: 166
effective length of database: 1,764,308
effective search space: 292875128
effective search space used: 292875128
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)