BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645023|ref|NP_207193.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (222 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1B54|    Crystal Structure Of A Yeast Hypothetical Prote...    94  1e-20
pdb|1CT5|A  Chain A, Crystal Structure Of Yeast Hypothetical...    87  1e-18
pdb|2DOR|A  Chain A, Dihydroorotate Dehydrogenase A From Lac...    25  5.5
pdb|1JAG|A  Chain A, Crystal Structure Of Human Deoxyguanosi...    25  5.5
pdb|1A9C|A  Chain A, Gtp Cyclohydrolase I (C110s Mutant) In ...    25  9.3

>pdb|1B54|   Crystal Structure Of A Yeast Hypothetical Protein - A Structure
           From Bnl's Human Proteome Project
          Length = 257

 Score = 94.4 bits (233), Expect = 1e-20
 Identities = 76/209 (36%), Positives = 112/209 (53%), Gaps = 21/209 (10%)

Query: 28  VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEWHMIGSLQENKIN 87
           + ++ VSK      IQ  Y+   R FGEN VQ+L  K   L    ++WH IG LQ NK  
Sbjct: 42  ILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD-DIKWHFIGGLQTNKCK 100

Query: 88  ALLSLKPAL--LHSLDSLKLALKIEKRCEILGVNLNALL---QVNSAYEESKSGVVPE-- 140
            L  + P L  + ++DSLK A K+ +       + N +L   Q+N+++E+ KSG+  E  
Sbjct: 101 DLAKV-PNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAE 159

Query: 141 --EALEIYSQISETCKHLKLKGLMCIGAHT---DDEKEIEKSFITT----KKLFDQIKNA 191
             E ++ +  +SE CK++KL GLM IG+     +D KE  + F T     KK+  +   +
Sbjct: 160 IFEVIDFF--LSEECKYIKLNGLMTIGSWNVSHEDSKE-NRDFATLVEWKKKIDAKFGTS 216

Query: 192 SVLSMGMSDDFELAIACGANLLRIGSFLF 220
             LSMGMS DF  AI  G   +RIG+ +F
Sbjct: 217 LKLSMGMSADFREAIRQGTAEVRIGTDIF 245



>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ybl036c-
           Selenomet Crystal
          Length = 256

 Score = 87.4 bits (215), Expect = 1e-18
 Identities = 74/207 (35%), Positives = 108/207 (51%), Gaps = 17/207 (8%)

Query: 28  VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEWHMIGSLQENKIN 87
           + ++ VSK      IQ  Y+   R FGEN VQ+L  K   L    ++WH IG LQ NK  
Sbjct: 41  ILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD-DIKWHFIGGLQTNKCK 99

Query: 88  ALLSLKPAL--LHSLDSLKLALKIEKRCEILGVNLNALL---QVNSAYEESKSGVVPE-E 141
            L  + P L  + ++DSLK A K+ +       + N +L   Q+N+++E+ KSG+  E E
Sbjct: 100 DLAKV-PNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAE 158

Query: 142 ALEIYS-QISETCKHLKLKGLMCIGAHT---DDEKEIEKSFIT----TKKLFDQIKNASV 193
             E+    +SE CK++KL GL  IG+     +D KE  + F T     KK+  +   +  
Sbjct: 159 IFEVIDFFLSEECKYIKLNGLXTIGSWNVSHEDSKE-NRDFATLVEWKKKIDAKFGTSLK 217

Query: 194 LSMGMSDDFELAIACGANLLRIGSFLF 220
           LS G S DF  AI  G   +RIG+ +F
Sbjct: 218 LSXGXSADFREAIRQGTAEVRIGTDIF 244



>pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
           Complexed With Orotate
 pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
           Complexed With Orotate
 pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
 pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
          Length = 311

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 18/47 (38%), Positives = 25/47 (52%), Gaps = 2/47 (4%)

Query: 176 KSFITTKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
           ++F T  K   QI     +  G  D FE  + CGA +L+IG+ L KE
Sbjct: 233 RAFYTRLKPEIQIIGTGGIETGQ-DAFE-HLLCGATMLQIGTALHKE 277



>pdb|1JAG|A Chain A, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|1JAG|B Chain B, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|1JAG|C Chain C, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|1JAG|D Chain D, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|1JAG|E Chain E, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|1JAG|F Chain F, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|1JAG|G Chain G, Crystal Structure Of Human Deoxyguanosine Kinase
 pdb|1JAG|H Chain H, Crystal Structure Of Human Deoxyguanosine Kinase
          Length = 241

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (56%)

Query: 180 TTKKLFDQIKNASVLSMGMSDDFELAIACGANLLR 214
           TTK  F+ + N  VL + ++DDF   +    +L+R
Sbjct: 198 TTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMR 232



>pdb|1A9C|A Chain A, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|B Chain B, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|C Chain C, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|D Chain D, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|E Chain E, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|F Chain F, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|G Chain G, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|H Chain H, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|I Chain I, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|J Chain J, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|K Chain K, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|L Chain L, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|M Chain M, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|N Chain N, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
 pdb|1A9C|O Chain O, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
          Length = 221

 Score = 24.6 bits (52), Expect = 9.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 1   MLDYRQKIDALITKIEKARTAYSRHHIVKI 30
           +++ + K+D ++T  +   T+ S HH V I
Sbjct: 88  LIENKMKVDEMVTVRDITLTSTSEHHFVTI 117



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.318    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,142,441
Number of Sequences: 13198
Number of extensions: 41125
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 5
length of query: 222
length of database: 2,899,336
effective HSP length: 85
effective length of query: 137
effective length of database: 1,777,506
effective search space: 243518322
effective search space used: 243518322
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)