BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645025|ref|NP_207195.1| phosphoglycerate
dehydrogenase (serA) [Helicobacter pylori 26695]
(524 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PSD|A Chain A, D-3-Phosphoglycerate Dehydrogenase (Pho... 159 7e-40
pdb|1GDH|A Chain A, D-Glycerate Dehydrogenase (Apo Form) (E... 136 5e-33
pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With ... 113 5e-26
pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate... 99 9e-22
pdb|1DXY| Structure Of D-2-Hydroxyisocaproate Dehydrogenase 99 9e-22
pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate... 96 1e-20
pdb|2NAD|A Chain A, Nad-Dependent Formate Dehydrogenase (E.... 95 2e-20
pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate... 49 1e-06
pdb|1HFO|A Chain A, The Structure Of The Macrophage Migrati... 27 7.3
pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8... 26 9.6
>pdb|1PSD|A Chain A, D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate
Dehydrogenase) (E.C.1.1.1.95)
pdb|1PSD|B Chain B, D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate
Dehydrogenase) (E.C.1.1.1.95)
Length = 409
Score = 159 bits (402), Expect = 7e-40
Identities = 105/321 (32%), Positives = 172/321 (52%), Gaps = 17/321 (5%)
Query: 6 ICDPIHAKGIQILEAQ--KDIVLHDYSKCPKKELLEKLTPMDALITRSMTPITSDFLKPL 63
+ + +H K ++ L A +I H ++L E + + RS T +T D +
Sbjct: 14 LVEGVHQKALESLRAAGYTNIEFHK-GALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA 72
Query: 64 THLKSIVRAGVGVDNIDLESCSQKGIVVMNIPTANTIAAVELTMAHLINAVRSFPCANDQ 123
L +I +G + +DL++ +++GI V N P +NT + EL + L+ +R P AN +
Sbjct: 73 EKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAK 132
Query: 124 IKHQRLWKREDWYGTELKNKKLGIIGFGNIGSRVGIRAKAFEMEVLAYD--PYIPSSKAT 181
H+ +W + E + KKLGIIG+G+IG+++GI A++ M V YD +P AT
Sbjct: 133 A-HRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNAT 191
Query: 182 DLGVIYTKNFEDILQC-DMITIHTPKNKETINMIGAKEIERMKKGVILLNCARGGLYNED 240
+ ++ D+L D++++H P+N T NM+GAKEI MK G +L+N +RG + +
Sbjct: 192 QV-----QHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIP 246
Query: 241 ALYEALETKKVRWLGIDVFSKEPGIH-----NKLLDLPNVYATPHIGANTLESQEEISKQ 295
AL +AL +K + IDVF EP + + L + NV TPHIG +T E+QE I +
Sbjct: 247 ALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLE 306
Query: 296 AAQGVMESLRGSSHPHALNLP 316
A +++ S A+N P
Sbjct: 307 VAGKLIKYSDNGSTLSAVNFP 327
Score = 36.6 bits (83), Expect = 0.007
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 451 GKMLLFRNTDIPGVIGSVGNAFARHGINIADFRLGRNTQKEALAL-IIVDEEVSLEVLEE 509
G+ L+ + + PGV+ ++ FA G+NIA L + Q + + I DE+V+ + L+
Sbjct: 336 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQA 395
Query: 510 LKNIPACL 517
+K IP +
Sbjct: 396 MKAIPGTI 403
>pdb|1GDH|A Chain A, D-Glycerate Dehydrogenase (Apo Form) (E.C.1.1.1.29)
pdb|1GDH|B Chain B, D-Glycerate Dehydrogenase (Apo Form) (E.C.1.1.1.29)
Length = 320
Score = 136 bits (343), Expect = 5e-33
Identities = 88/300 (29%), Positives = 148/300 (49%), Gaps = 12/300 (4%)
Query: 23 DIVLH-DYSKCPKKELLEKLTPMDALITRSMTPITSDFLKPLT-HLKSIVRAGVGVDNID 80
D++ H D K E++E +DAL+ + + + ++K I +G D+ID
Sbjct: 23 DVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHID 82
Query: 81 LESCSQKGIVVMNIPTANTIAAVELTMAHLINAVRSFPCANDQIKHQRL--WKREDWYGT 138
L++C +GI V N P T+A E+ M L+ + R I+ + W+ + G
Sbjct: 83 LDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGE 142
Query: 139 ELKNKKLGIIGFGNIGSRVGIRAKAFEMEVLAYDPYIPSSKATDLGVIYTKNFEDILQC- 197
+L NK LGI GFG+IG + RA+ F+M++ +D + SS Y F D L
Sbjct: 143 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDE---ASYQATFHDSLDSL 199
Query: 198 ----DMITIHTPKNKETINMIGAKEIERMKKGVILLNCARGGLYNEDALYEALETKKVRW 253
+++ P ET I+ + +G I++N ARG L + + + ALE ++ +
Sbjct: 200 LSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAY 259
Query: 254 LGIDVFSKEPGIHNKLLDLPNVYATPHIGANTLESQEEISKQAAQGVMESLRGSSHPHAL 313
G DVF+ EP I+ DLPN + PHIG+ +++E+++ QA + G+ +AL
Sbjct: 260 AGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGADMSYAL 319
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 113 bits (283), Expect = 5e-26
Identities = 85/319 (26%), Positives = 146/319 (45%), Gaps = 30/319 (9%)
Query: 19 EAQKDIVLHDYSKCPKKELLEKLTPMDALITRSMTPITSDFLKPLTH--LKSIVRAGVGV 76
EA KDI + K E + D ++ T+D L+ L + + VGV
Sbjct: 22 EAHKDIDVDYTDKLLTPETAKLAKGADGVVVYQQLDYTADTLQALADAGVTKMSLRNVGV 81
Query: 77 DNIDLESCSQKGIVVMNIPTANTIAAVELTMAHLINAVRSFPCANDQIKHQRLWKRE-DW 135
DNID++ + G + N+P + A E +R D+ +++ KR+ W
Sbjct: 82 DNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQ-----DKRMDEKMAKRDLRW 136
Query: 136 ---YGTELKNKKLGIIGFGNIGSRVGIRAKAFEMEVLAYDPYIPSSKATDLGVIYTKNFE 192
G E++++ +G++G G+IG + F +V+AYD + + + Y + +
Sbjct: 137 APTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIF--KNPELEKKGYYVDSLD 194
Query: 193 DIL-QCDMITIHTPKNKETINMIGAKEIERMKKGVILLNCARGGLYNEDALYEALETKKV 251
D+ Q D+I++H P ++MI K I MK GV+++NC+RG L + DA+ L++ K+
Sbjct: 195 DLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKI 254
Query: 252 RWLGIDVFSKEPGIHNK--------------LLDLPNVYATPHIGANTLESQEEISKQAA 297
+D + E G+ NK L+D PNV TPH T + + +A
Sbjct: 255 FGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNMVVKAF 314
Query: 298 QGVMESLRGS--SHPHALN 314
++ + G P ALN
Sbjct: 315 NNNLKLINGEKPDSPVALN 333
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 99.4 bits (246), Expect = 9e-22
Identities = 74/306 (24%), Positives = 138/306 (44%), Gaps = 22/306 (7%)
Query: 19 EAQKDIVLHDYSKCPKKELLEKLTPMDALITRSMTPITSDFLKPLTH--LKSIVRAGVGV 76
+A KD+ + K E + D ++ ++ L+ L + + VGV
Sbjct: 22 DAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGV 81
Query: 77 DNIDLESCSQKGIVVMNIPTANTIAAVELTMAHLINAVRSFPCANDQI-KHQRLWKREDW 135
DNID+ + G + N+P + A E +R ++++ +H W
Sbjct: 82 DNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPT-- 139
Query: 136 YGTELKNKKLGIIGFGNIGSRVGIRAKAFEMEVLAYDPYIPSSKATDLGVIYTKNFEDIL 195
G E++++ +G++G G+IG + F +V+ YD + + + Y + +D+
Sbjct: 140 IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF--RNPELEKKGYYVDSLDDLY 197
Query: 196 -QCDMITIHTPKNKETINMIGAKEIERMKKGVILLNCARGGLYNEDALYEALETKKVRWL 254
Q D+I++H P ++MI + I +MK+ V+++N +RG L + DA+ L++ K+
Sbjct: 198 KQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGY 257
Query: 255 GIDVFSKEPGIHN-----------KLLDL---PNVYATPHIGANTLESQEEISKQAAQGV 300
+DV+ E GI N +L DL PNV TPH T + + +A
Sbjct: 258 AMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNMVVKAFDNN 317
Query: 301 MESLRG 306
+E + G
Sbjct: 318 LELVEG 323
>pdb|1DXY| Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 99.4 bits (246), Expect = 9e-22
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 20/236 (8%)
Query: 66 LKSIVRAGVGVDNIDLESCSQKGIVVMNIPTANTIAAVELTMAHLINAVRSFPCANDQIK 125
+K + VG DNID+ + Q GI + N+P + A E + + +R+ Q++
Sbjct: 69 IKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQ 128
Query: 126 HQRLWKREDWYGTELKNKKLGIIGFGNIGSRVGIRAKAFEMEVLAYDPYIPSSKATDLGV 185
K + G EL + +G++G G+IG K F +V+AYDPY D
Sbjct: 129 AGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDY 188
Query: 186 IYTKNFEDIL-QCDMITIHTPKNKETINMIGAKEIERMKKGVILLNCARGGLYNEDALYE 244
+ + ED+ Q D+I +H P ++ ++I MK G I++N AR L + A+
Sbjct: 189 V---SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLS 245
Query: 245 ALETKKVRWLGIDVFS---------------KEPGIHNKLLDLPNVYATPHIGANT 285
L++ K+ +GID + K+P + ++LL +PNV +PHI T
Sbjct: 246 NLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDP-LWDELLGMPNVVLSPHIAYYT 300
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 95.9 bits (237), Expect = 1e-20
Identities = 73/306 (23%), Positives = 137/306 (43%), Gaps = 22/306 (7%)
Query: 19 EAQKDIVLHDYSKCPKKELLEKLTPMDALITRSMTPITSDFLKPLTH--LKSIVRAGVGV 76
+A KD+ + K E + D ++ ++ L+ L + + VGV
Sbjct: 22 DAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGV 81
Query: 77 DNIDLESCSQKGIVVMNIPTANTIAAVELTMAHLINAVRSFPCANDQI-KHQRLWKREDW 135
DNID+ + G + N+P + A E +R ++++ +H W
Sbjct: 82 DNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPT-- 139
Query: 136 YGTELKNKKLGIIGFGNIGSRVGIRAKAFEMEVLAYDPYIPSSKATDLGVIYTKNFEDIL 195
G E++++ +G++G G+IG + F +V+ YD + + + Y + +D+
Sbjct: 140 IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF--RNPELEKKGYYVDSLDDLY 197
Query: 196 -QCDMITIHTPKNKETINMIGAKEIERMKKGVILLNCARGGLYNEDALYEALETKKVRWL 254
Q D+I++H P ++MI + I +MK+ V+++N +RG L + DA+ L++ K+
Sbjct: 198 KQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGY 257
Query: 255 GIDVFSKEPGIHN-----------KLLDL---PNVYATPHIGANTLESQEEISKQAAQGV 300
+DV+ E GI N +L DL PNV TP T + + +A
Sbjct: 258 AMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNN 317
Query: 301 MESLRG 306
+E + G
Sbjct: 318 LELVEG 323
>pdb|2NAD|A Chain A, Nad-Dependent Formate Dehydrogenase (E.C.1.2.1.2) (Holo
Form) Complexed With Nad And Azide
pdb|2NAD|B Chain B, Nad-Dependent Formate Dehydrogenase (E.C.1.2.1.2) (Holo
Form) Complexed With Nad And Azide
pdb|2NAC|A Chain A, Nad-Dependent Formate Dehydrogenase (E.C.1.2.1.2) (Apo
Form)
pdb|2NAC|B Chain B, Nad-Dependent Formate Dehydrogenase (E.C.1.2.1.2) (Apo
Form)
Length = 393
Score = 95.1 bits (235), Expect = 2e-20
Identities = 68/264 (25%), Positives = 132/264 (49%), Gaps = 8/264 (3%)
Query: 33 PKKELLEKLTPMDALITRSMTP--ITSDFLKPLTHLKSIVRAGVGVDNIDLESCSQKGIV 90
P +L D +I++ P +T + + +LK + AG+G D++DL+S + +
Sbjct: 79 PDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVT 138
Query: 91 VMNIPTANTIAAVELTMAHLINAVRSFPCANDQIKHQRLWKREDW--YGTELKNKKLGII 148
V + N+I+ E + +++ VR++ +++ + W D + +L+ +G +
Sbjct: 139 VAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGG-WNIADCVSHAYDLEAMHVGTV 197
Query: 149 GFGNIGSRVGIRAKAFEMEVLAYDPY-IPSSKATDLGVIYTKNFEDILQ-CDMITIHTPK 206
G IG V R F++ + D + +P S +L + + ED+ CD++T++ P
Sbjct: 198 AAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPL 257
Query: 207 NKETINMIGAKEIERMKKGVILLNCARGGLYNEDALYEALETKKVRWLGIDVFSKEPG-I 265
+ ET +MI + ++ K+G ++N ARG L + DA+ ALE+ ++ DV+ +P
Sbjct: 258 HPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPK 317
Query: 266 HNKLLDLPNVYATPHIGANTLESQ 289
+ +P TPHI TL +Q
Sbjct: 318 DHPWRTMPYNGMTPHISGTTLTAQ 341
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 49.3 bits (116), Expect = 1e-06
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 33/248 (13%)
Query: 46 ALITRSMTPITSDFLKPLTHLKSIVRAGVGVDNIDLESCSQKGIVVMNIPTANTIAAVEL 105
AL++R IT++ L LK I G+D++ ES V N + N A E
Sbjct: 35 ALVSR----ITAEELAKXPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAGS-NADAVAEF 89
Query: 106 TMAHLINAVRSFPCANDQIKHQRLWKREDWYGTE-----LKNKKLGIIGFGNIGSRVGIR 160
+A L+ + I++ KR D YG + ++ +K+ ++G G IG+RVG
Sbjct: 90 ALALLLAPYKRI------IQYGEKXKRGD-YGRDVEIPLIQGEKVAVLGLGEIGTRVGKI 142
Query: 161 AKAFEMEVLAYDPYIPSSKATDLGVIYTKNFEDIL-QCDMITIHTPKNKETINMIGAKEI 219
A +V + S + +T + E+ L + P NK T ++ + +
Sbjct: 143 LAALGAQVRGF-----SRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHL 197
Query: 220 ERMKKGVILLNCARGGLYNEDALYEALETK------KVRWLGIDVFSKEPGIHNKLLDLP 273
+ + +N R + + D + L+ + W G + F+K+ + LP
Sbjct: 198 ALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDA----EFFSLP 253
Query: 274 NVYATPHI 281
NV ATP +
Sbjct: 254 NVVATPWV 261
>pdb|1HFO|A Chain A, The Structure Of The Macrophage Migration Inhibitory
Factor From Trichinella Spiralis.
pdb|1HFO|E Chain E, The Structure Of The Macrophage Migration Inhibitory
Factor From Trichinella Spiralis.
pdb|1HFO|C Chain C, The Structure Of The Macrophage Migration Inhibitory
Factor From Trichinella Spiralis.
pdb|1HFO|D Chain D, The Structure Of The Macrophage Migration Inhibitory
Factor From Trichinella Spiralis.
pdb|1HFO|F Chain F, The Structure Of The Macrophage Migration Inhibitory
Factor From Trichinella Spiralis.
pdb|1HFO|B Chain B, The Structure Of The Macrophage Migration Inhibitory
Factor From Trichinella Spiralis
Length = 113
Score = 26.6 bits (57), Expect = 7.3
Identities = 22/79 (27%), Positives = 31/79 (38%), Gaps = 7/79 (8%)
Query: 257 DVFSKEPGIHNKLLDLPNVYATPHIGANTLESQEEISKQAAQGVMESLRGSSHPHALNLP 316
D S + +L P Y HI + S + AA G + S+ G P
Sbjct: 17 DFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIE-------P 69
Query: 317 MQAFDASAKAYLNLAQKLG 335
+ D SAK + +L KLG
Sbjct: 70 SRNRDHSAKLFDHLNTKLG 88
>pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
pdb|3LAD|B Chain B, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
Length = 476
Score = 26.2 bits (56), Expect = 9.6
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 144 KLGIIGFGNIGSRVG---IRAKAFEMEVLAYDPYIPS---SKATDLGVIYTKNFEDILQC 197
KLG+IG G IG +G R A + A D ++P+ A + I TK IL
Sbjct: 182 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLG 241
Query: 198 DMITIHTPKNKE-TINMIGAK 217
+T KNK+ T+ + A+
Sbjct: 242 ARVTGTEVKNKQVTVKFVDAE 262
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,899,735
Number of Sequences: 13198
Number of extensions: 118402
Number of successful extensions: 282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 12
length of query: 524
length of database: 2,899,336
effective HSP length: 92
effective length of query: 432
effective length of database: 1,685,120
effective search space: 727971840
effective search space used: 727971840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)