BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645026|ref|NP_207196.1| hypothetical protein
[Helicobacter pylori 26695]
(182 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 27 1.4
pdb|1KK6|B Chain B, Crystal Structure Of Vat(D) (Form I) >g... 27 1.8
pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegi... 26 3.1
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts >gi|11514... 25 4.0
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 25 4.0
pdb|1JEY|B Chain B, Crystal Structure Of The Ku Heterodimer... 25 4.0
pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Prot... 25 5.2
pdb|1AK2| Adenylate Kinase Isoenzyme-2 >gi|1633467|pdb|2A... 25 6.8
pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannasch... 25 6.8
pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mec... 24 8.9
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130 >gi|67... 24 8.9
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 26.9 bits (58), Expect = 1.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 107 EIPFEEKKREYSKLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKN 151
EI + K R K+I + LK++ L+KE IDY +NTKN
Sbjct: 163 EIELDNKTR--FKIIKEKLKEFNLE-----LRKEVIDYLLENTKN 200
>pdb|1KK6|B Chain B, Crystal Structure Of Vat(D) (Form I)
pdb|1KK6|C Chain C, Crystal Structure Of Vat(D) (Form I)
pdb|1KK4|D Chain D, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|A Chain A, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|F Chain F, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KHR|D Chain D, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK6|A Chain A, Crystal Structure Of Vat(D) (Form I)
pdb|1KK4|B Chain B, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|C Chain C, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK5|C Chain C, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|D Chain D, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|E Chain E, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK5|A Chain A, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|B Chain B, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|C Chain C, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KHR|B Chain B, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK5|E Chain E, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|F Chain F, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|A Chain A, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KHR|F Chain F, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK4|E Chain E, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
Length = 209
Score = 26.6 bits (57), Expect = 1.8
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 109 PFEEKKREYSKLIIKDLKDYQWWCLKEILKKEQIDYAYDNT 149
P E K+ + + I L D +WW + E ID DN+
Sbjct: 160 PANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNS 200
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 25.8 bits (55), Expect = 3.1
Identities = 34/148 (22%), Positives = 63/148 (41%), Gaps = 29/148 (19%)
Query: 42 AISQTNEGLSQT-DAKSHDIDLEENSPTETSHNEKASHNEEDHNNALSQNLDAQESINYP 100
A QT+ G + T + K HD L P + +H+ DH ++ +NL+ +
Sbjct: 83 AYGQTSSGKTHTMEGKLHDPQLMGIIP-------RIAHDIFDHIYSMDENLE------FH 129
Query: 101 VVEHYSEIPFEEKKREYSKLIIKDLKDYQWWCLKEILKKEQIDYAYDNTK----NQPNLI 156
+ Y EI ++ I+DL D L K ++ Y T+ + ++
Sbjct: 130 IKVSYFEIYLDK---------IRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVM 180
Query: 157 IYLDENKKERLLA--DLDYYKIRYHAVF 182
+DE K R +A +++ + R H++F
Sbjct: 181 DVIDEGKANRHVAVTNMNEHSSRSHSIF 208
>pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
Length = 649
Score = 25.4 bits (54), Expect = 4.0
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 101 VVEHYSEIP---FEEKKREYSKLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLII 157
V +Y E+ +E +EY ++ LKD Q + L E+ +KE+ Y + + +
Sbjct: 329 VFGYYLEVTRPYYERVPKEYRP--VQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEV 386
Query: 158 YLDENKK-----------ERLLADLDYY 174
+L+ ++ R+LA+LD Y
Sbjct: 387 FLEVRERAKRQAEALREAARILAELDVY 414
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 25.4 bits (54), Expect = 4.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 44 SQTNEGLSQT-DAKSHDIDLEENSPTETSHNEKASHNEEDHNNALSQNLDA 93
SQ N L + + +SH DL+E+ +E + KA + D LS+ L+A
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD----LSEELEA 1155
>pdb|1JEY|B Chain B, Crystal Structure Of The Ku Heterodimer Bound To Dna
pdb|1JEQ|B Chain B, Crystal Structure Of The Ku Heterodimer
Length = 565
Score = 25.4 bits (54), Expect = 4.0
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 86 ALSQNLDAQESINYPVVEH------YSEIPFEEKKREYSKLIIKDLKDY 128
A + + Q + +P ++H Y ++PF E R+Y +K+ K Y
Sbjct: 396 AYDKRANPQVGVAFPHIKHNYECLVYVQLPFMEDLRQYMFSSLKNSKKY 444
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1
Length = 196
Score = 25.0 bits (53), Expect = 5.2
Identities = 15/52 (28%), Positives = 23/52 (43%)
Query: 43 ISQTNEGLSQTDAKSHDIDLEENSPTETSHNEKASHNEEDHNNALSQNLDAQ 94
ISQ N L + D + +D + E+ASH +N ++Q D Q
Sbjct: 11 ISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQ 62
>pdb|1AK2| Adenylate Kinase Isoenzyme-2
pdb|2AK2| Adenylate Kinase Isoenzyme-2
Length = 233
Score = 24.6 bits (52), Expect = 6.8
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 63 EENSPTETSHN----EKASHNEEDHNNALSQNLDAQESINYPVVEHYSE 107
E N P E + E +D+ AL L+A + P+VE+YS+
Sbjct: 156 EFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSK 204
>pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77| Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 24.6 bits (52), Expect = 6.8
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 60 IDLEENSPTETSHNEKASHNEEDHNNALSQNLDAQESINYPVVEHYSEIPFEEKKREYSK 119
I L + SP E S +N + + E+ P+ E P K +E ++
Sbjct: 39 IRLRDGSPLRNRKGEITSA----YNGVFYKTIHLLENDITPIWVFDGEPP---KLKEKTR 91
Query: 120 LIIKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLIIYLDENKK 164
+ +++K+ +KE +KKE + A K L + EN K
Sbjct: 92 KVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCK 136
>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
Length = 678
Score = 24.3 bits (51), Expect = 8.9
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 10 ISLAVALGVLAYLFLSVKKEMPAT 33
+ LAVA+GVLA F + ++P T
Sbjct: 648 VDLAVAMGVLATYFPDMTYKVPGT 671
>pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 24.3 bits (51), Expect = 8.9
Identities = 15/61 (24%), Positives = 27/61 (43%)
Query: 105 YSEIPFEEKKREYSKLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLIIYLDENKK 164
+S+IP E+ S ++DLK + + + KE + + + + I Y D K
Sbjct: 151 WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK 210
Query: 165 E 165
E
Sbjct: 211 E 211
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,020,169
Number of Sequences: 13198
Number of extensions: 39952
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 11
length of query: 182
length of database: 2,899,336
effective HSP length: 83
effective length of query: 99
effective length of database: 1,803,902
effective search space: 178586298
effective search space used: 178586298
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)