BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645027|ref|NP_207197.1| ribosomal protein S1 (rps1)
[Helicobacter pylori 26695]
(556 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1SRO| S1 Rna Binding Domain, Nmr, 20 Structures 56 1e-08
pdb|1GO3|M Chain M, Structure Of An Archeal Homolog Of The ... 38 0.003
pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces An... 36 0.010
pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibi... 36 0.010
pdb|1KDS|A Chain A, X-Ray Crystal Structure Of Ampc Beta-La... 32 0.19
pdb|1FSY|A Chain A, Ampc Beta-Lactamase From E. Coli Comple... 32 0.19
pdb|1L0G|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mu... 32 0.19
pdb|1L0D|A Chain A, X-Ray Crystal Structure Of Ampc S64d Mu... 32 0.19
pdb|1L0F|A Chain A, X-Ray Crystal Structure Of Ampc N152h M... 32 0.19
pdb|1I5Q|B Chain B, Crystal Structure Of The E. Coli Ampc B... 32 0.19
pdb|1L0E|A Chain A, X-Ray Crystal Structure Of Ampc K67q Mu... 32 0.19
pdb|1FCN|B Chain B, Crystal Structure Of The E. Coli Ampc B... 32 0.19
pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf 31 0.41
pdb|1I4N|A Chain A, Crystal Structure Of Indoleglycerol Pho... 31 0.41
pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhy... 31 0.41
pdb|1KL9|A Chain A, Crystal Structure Of The N-Terminal Seg... 31 0.41
pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhy... 30 0.92
pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus ... 30 0.92
pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution O... 29 1.6
pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Pol... 29 1.6
pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapol... 28 3.5
pdb|1EU3|A Chain A, Crystal Structure Of The Superantigen S... 27 4.6
pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehy... 27 7.8
pdb|1A8L| Protein Disulfide Oxidoreductase From Archaeon ... 27 7.8
pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehy... 27 7.8
pdb|1DN2|A Chain A, Fc Fragment Of Human Igg1 In Complex Wi... 27 7.8
>pdb|1SRO| S1 Rna Binding Domain, Nmr, 20 Structures
Length = 76
Score = 55.8 bits (133), Expect = 1e-08
Identities = 27/65 (41%), Positives = 45/65 (68%), Gaps = 2/65 (3%)
Query: 296 VSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLR 355
V+ I +G FV IG EG +H+S+I+ DK V +YL +GQE+ VK++++D + R+R
Sbjct: 13 VTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIR 70
Query: 356 VSLKQ 360
+S+K+
Sbjct: 71 LSIKE 75
Score = 47.0 bits (110), Expect = 6e-06
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 374 QVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 432
+VG V GKV + DFGAF+ + GG +GL+H + +K D+ ++G + VK+L++
Sbjct: 4 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 63
Query: 433 NKKDKKISLSAK 444
+++ +I LS K
Sbjct: 64 DRQG-RIRLSIK 74
Score = 40.8 bits (94), Expect = 4e-04
Identities = 29/73 (39%), Positives = 37/73 (49%), Gaps = 2/73 (2%)
Query: 201 LEATEPVLGVVRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIA 259
+E G V +I FG FV G EGLVH S+I+ K Y + G EV VK +
Sbjct: 3 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 62
Query: 260 YDAEKRRLSLSIK 272
D + R+ LSIK
Sbjct: 63 VD-RQGRIRLSIK 74
Score = 27.3 bits (59), Expect = 4.6
Identities = 19/67 (28%), Positives = 35/67 (51%), Gaps = 6/67 (8%)
Query: 463 VIQGKVVSIKDFGVFI----NADGIDVLIKNEDLNPLK-KDEIKIGQEITCVVVAIEKSN 517
V GKV I DFG F+ +G+ + + D K D +++GQE+ V+ +++
Sbjct: 8 VYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-Q 66
Query: 518 NKVRASV 524
++R S+
Sbjct: 67 GRIRLSI 73
>pdb|1GO3|M Chain M, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
pdb|1GO3|E Chain E, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
Length = 187
Score = 37.7 bits (86), Expect = 0.003
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 16/84 (19%)
Query: 377 DVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDK-----------DKKCKDHYKIGDVI 425
+++EG+V + +FG+F+ LG +DGL+H D K+ +IGD +
Sbjct: 83 ELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYV 142
Query: 426 KVKILKIN-----KKDKKISLSAK 444
+ +I+ I+ K+ KI+L+ +
Sbjct: 143 RARIVAISLKAERKRGSKIALTMR 166
Score = 29.3 bits (64), Expect = 1.2
Identities = 27/91 (29%), Positives = 42/91 (45%), Gaps = 14/91 (15%)
Query: 202 EATEPVLGVVRQITPFGIFVEAKGIEGLVHYSEI---------SHKGPVNPE--KYYKEG 250
E E + G V + FG FV ++GL+H S+I + + E K + G
Sbjct: 80 EMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIG 139
Query: 251 DEVYVK--AIAYDAEKRRLSLSIKATIEDPW 279
D V + AI+ AE++R S I T+ P+
Sbjct: 140 DYVRARIVAISLKAERKRGS-KIALTMRQPY 169
Score = 28.5 bits (62), Expect = 2.1
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 296 VSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSH-----------PNNYLSVGQEIDVKI 344
V ++ +G FV +G ++G +HVS+I D VS+ L +G + +I
Sbjct: 89 VVDVVEFGSFVRLG-PLDGLIHVSQI-MDDYVSYDPKREAIIGKETGKVLEIGDYVRARI 146
Query: 345 IDIDPKNRRLRVSLKQLTNR 364
+ I K R R S LT R
Sbjct: 147 VAISLKAERKRGSKIALTMR 166
>pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 36.2 bits (82), Expect = 0.010
Identities = 18/54 (33%), Positives = 32/54 (58%), Gaps = 3/54 (5%)
Query: 302 YGVFVDIGNDIEGFLHVSEI---SWDKNVSHPNNYLSVGQEIDVKIIDIDPKNR 352
+G FV + +G LH+S+I + K V + + L VGQ++ V+I +ID + +
Sbjct: 681 FGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGK 734
Score = 35.0 bits (79), Expect = 0.022
Identities = 31/97 (31%), Positives = 48/97 (48%), Gaps = 10/97 (10%)
Query: 374 QVGDVLEGKVATLTDFGAFLN-LGGVDGLLHNHD----AFWDKDKKCKDHYKIGDVIKVK 428
+VG+ + G V T FGAF++ L G DGLLH A + + +D +G ++V+
Sbjct: 666 EVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVE 725
Query: 429 ILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQ 465
I +I+ + K+SL + EE A K D Q
Sbjct: 726 IAEIDSRG-KLSL----IPVIEGEEAASDEKKDDAEQ 757
Score = 30.0 bits (66), Expect = 0.71
Identities = 26/73 (35%), Positives = 36/73 (48%), Gaps = 6/73 (8%)
Query: 202 EATEPVLGVVRQITPFGIFVE-AKGIEGLVHYSEI----SHKGPVNPEKYYKEGDEVYVK 256
E E +LG V + T FG FV G +GL+H S+I K N E G +V V+
Sbjct: 666 EVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVE 725
Query: 257 AIAYDAEKRRLSL 269
D+ + +LSL
Sbjct: 726 IAEIDS-RGKLSL 737
>pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
Enzyme
Length = 757
Score = 36.2 bits (82), Expect = 0.010
Identities = 18/54 (33%), Positives = 32/54 (58%), Gaps = 3/54 (5%)
Query: 302 YGVFVDIGNDIEGFLHVSEI---SWDKNVSHPNNYLSVGQEIDVKIIDIDPKNR 352
+G FV + +G LH+S+I + K V + + L VGQ++ V+I +ID + +
Sbjct: 681 FGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGK 734
Score = 35.0 bits (79), Expect = 0.022
Identities = 31/97 (31%), Positives = 48/97 (48%), Gaps = 10/97 (10%)
Query: 374 QVGDVLEGKVATLTDFGAFLN-LGGVDGLLHNHD----AFWDKDKKCKDHYKIGDVIKVK 428
+VG+ + G V T FGAF++ L G DGLLH A + + +D +G ++V+
Sbjct: 666 EVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVE 725
Query: 429 ILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQ 465
I +I+ + K+SL + EE A K D Q
Sbjct: 726 IAEIDSRG-KLSL----IPVIEGEEAASDEKKDDAEQ 757
Score = 30.0 bits (66), Expect = 0.71
Identities = 26/73 (35%), Positives = 36/73 (48%), Gaps = 6/73 (8%)
Query: 202 EATEPVLGVVRQITPFGIFVE-AKGIEGLVHYSEI----SHKGPVNPEKYYKEGDEVYVK 256
E E +LG V + T FG FV G +GL+H S+I K N E G +V V+
Sbjct: 666 EVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVE 725
Query: 257 AIAYDAEKRRLSL 269
D+ + +LSL
Sbjct: 726 IAEIDS-RGKLSL 737
>pdb|1KDS|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 3-Nitrophenylboronic
Acid
pdb|1KDS|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 3-Nitrophenylboronic
Acid
pdb|1KDW|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4-Carboxyphenylboronic Acid
pdb|1KDW|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4-Carboxyphenylboronic Acid
pdb|1KE0|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 4-(Carboxyvin-2-Yl)
Phenylboronic Acid
pdb|1KE0|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 4-(Carboxyvin-2-Yl)
Phenylboronic Acid
pdb|1KE3|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4,4'-Biphenyldiboronic Acid
pdb|1KE3|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4,4'-Biphenyldiboronic Acid
pdb|1KE4|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli
pdb|1KE4|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli
pdb|1L2S|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With A Dock-Predicted Non-Covalent
Inhibitor
pdb|1L2S|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With A Dock-Predicted Non-Covalent
Inhibitor
pdb|1LL9|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Amoxicillin
pdb|1LL9|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Amoxicillin
pdb|1LLB|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Atmo-Penicillin
pdb|1LLB|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Atmo-Penicillin
pdb|1FCO|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Covalently Acylated With The Inhibitory Beta-Lactam,
Moxalactam
pdb|1C3B|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor,
Benzo(B)thiophene-2-Boronic Acid (Bzb)
pdb|1C3B|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor,
Benzo(B)thiophene-2-Boronic Acid (Bzb)
pdb|2BLS|A Chain A, Ampc Beta-Lactamase From Escherichia Coli
pdb|2BLS|B Chain B, Ampc Beta-Lactamase From Escherichia Coli
pdb|3BLS|A Chain A, Ampc Beta-Lactamase From Escherichia Coli
pdb|3BLS|B Chain B, Ampc Beta-Lactamase From Escherichia Coli
pdb|1KVM|B Chain B, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Cephalothin
pdb|1IEM|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With A Boronic Acid Inhibitor (1, Cefb4)
pdb|1IEM|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With A Boronic Acid Inhibitor (1, Cefb4)
pdb|1FCO|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Covalently Acylated With The Inhibitory Beta-Lactam,
Moxalactam
pdb|1KVM|A Chain A, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Cephalothin
pdb|1IEL|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Ceftazidime
pdb|1GA9|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli
Complexed With Non-Beta-Lactamase Inhibitor (2, 3-(4-
Benzenesulfonyl-Thiophene-2-Sulfonylamino)-Phenylboronic
Acid)
pdb|1IEL|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Ceftazidime
pdb|1GA9|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli
Complexed With Non-Beta-Lactamase Inhibitor (2, 3-(4-
Benzenesulfonyl-Thiophene-2-Sulfonylamino)-Phenylboronic
Acid)
Length = 358
Score = 32.0 bits (71), Expect = 0.19
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 247 YKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKP 288
Y+EG V+V A DAE + +K+TIED +Q LKP
Sbjct: 200 YREGKAVHVSPGALDAE----AYGVKSTIEDMARWVQSNLKP 237
>pdb|1FSY|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cloxacillinboronic Acid
pdb|1FSY|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cloxacillinboronic Acid
pdb|1FSW|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cephalothinboronic Acid
pdb|1FSW|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cephalothinboronic Acid
Length = 358
Score = 32.0 bits (71), Expect = 0.19
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 247 YKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKP 288
Y+EG V+V A DAE + +K+TIED +Q LKP
Sbjct: 200 YREGKAVHVSPGALDAE----AYGVKSTIEDMARWVQSNLKP 237
>pdb|1L0G|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
pdb|1L0G|B Chain B, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
pdb|1KVL|B Chain B, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
In Complex With Substrate And Product Forms Of
Cephalothin
pdb|1KVL|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
In Complex With Substrate And Product Forms Of
Cephalothin
Length = 358
Score = 32.0 bits (71), Expect = 0.19
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 247 YKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKP 288
Y+EG V+V A DAE + +K+TIED +Q LKP
Sbjct: 200 YREGKAVHVSPGALDAE----AYGVKSTIEDMARWVQSNLKP 237
>pdb|1L0D|A Chain A, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
pdb|1L0D|B Chain B, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
Length = 358
Score = 32.0 bits (71), Expect = 0.19
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 247 YKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKP 288
Y+EG V+V A DAE + +K+TIED +Q LKP
Sbjct: 200 YREGKAVHVSPGALDAE----AYGVKSTIEDMARWVQSNLKP 237
>pdb|1L0F|A Chain A, X-Ray Crystal Structure Of Ampc N152h Mutant
Beta-Lactamase
pdb|1L0F|B Chain B, X-Ray Crystal Structure Of Ampc N152h Mutant
Beta-Lactamase
Length = 358
Score = 32.0 bits (71), Expect = 0.19
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 247 YKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKP 288
Y+EG V+V A DAE + +K+TIED +Q LKP
Sbjct: 200 YREGKAVHVSPGALDAE----AYGVKSTIEDMARWVQSNLKP 237
>pdb|1I5Q|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant N152a Covalently Acylated With The Inhibitory
Beta-Lactam, Moxalactam
pdb|1I5Q|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant N152a Covalently Acylated With The Inhibitory
Beta-Lactam, Moxalactam
Length = 358
Score = 32.0 bits (71), Expect = 0.19
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 247 YKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKP 288
Y+EG V+V A DAE + +K+TIED +Q LKP
Sbjct: 200 YREGKAVHVSPGALDAE----AYGVKSTIEDMARWVQSNLKP 237
>pdb|1L0E|A Chain A, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase
pdb|1L0E|B Chain B, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase
Length = 358
Score = 32.0 bits (71), Expect = 0.19
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 247 YKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKP 288
Y+EG V+V A DAE + +K+TIED +Q LKP
Sbjct: 200 YREGKAVHVSPGALDAE----AYGVKSTIEDMARWVQSNLKP 237
>pdb|1FCN|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant Q120lY150E COVALENTLY ACYLATED WITH THE SUBSTRATE
BETA- Lactam Loracarbef
pdb|1FCM|B Chain B, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant
Q120lY150E COVALENTLY ACYLATED WITH THE INHIBITORY BETA-
Lactam, Cloxacillin
pdb|1FCN|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant Q120lY150E COVALENTLY ACYLATED WITH THE SUBSTRATE
BETA- Lactam Loracarbef
pdb|1FCM|A Chain A, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant
Q120lY150E COVALENTLY ACYLATED WITH THE INHIBITORY BETA-
Lactam, Cloxacillin
Length = 358
Score = 32.0 bits (71), Expect = 0.19
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 247 YKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKP 288
Y+EG V+V A DAE + +K+TIED +Q LKP
Sbjct: 200 YREGKAVHVSPGALDAE----AYGVKSTIEDMARWVQSNLKP 237
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 30.8 bits (68), Expect = 0.41
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 453 EFAQKHKTDSVIQGKVVSIKDFGVFINADGIDV 485
EFA + K D V+Q KV S+K+ + +NA +V
Sbjct: 385 EFAPEMKADQVLQDKVRSLKNVDIILNAQTTEV 417
>pdb|1I4N|A Chain A, Crystal Structure Of Indoleglycerol Phosphate Synthase
From Thermotoga Maritima
pdb|1I4N|B Chain B, Crystal Structure Of Indoleglycerol Phosphate Synthase
From Thermotoga Maritima
Length = 251
Score = 30.8 bits (68), Expect = 0.41
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 165 KACIIRVDKENHSINISRKRFFEV-NDKRQLEVSKELLEATEPVLGVVRQITPFGIFVEA 223
K I+ +D EN + RF EV + K ++++ E +A+ P G + F+
Sbjct: 11 KKDILEIDGENLIVQRRNHRFLEVLSGKERVKIIAEFKKAS-PSAGDINADASLEDFIRM 69
Query: 224 KGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKA 257
Y E++ + EK+Y +GD +V+A
Sbjct: 70 --------YDELADAISILTEKHYFKGDPAFVRA 95
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 30.8 bits (68), Expect = 0.41
Identities = 19/84 (22%), Positives = 35/84 (41%)
Query: 248 KEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVD 307
K+GDE + I + ++ ++ + ++D W+ Q+ G V + GV V+
Sbjct: 170 KDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDGKLRDLGVVVN 229
Query: 308 IGNDIEGFLHVSEISWDKNVSHPN 331
+DI F S +PN
Sbjct: 230 SSDDISKFYRTKSDSGALKAGNPN 253
>pdb|1KL9|A Chain A, Crystal Structure Of The N-Terminal Segment Of Human
Eukaryotic Initiation Factor 2alpha
Length = 182
Score = 30.8 bits (68), Expect = 0.41
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 202 EATEPVLGVVRQITPFGIFV---EAKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAI 258
E + V VR I G +V E IEG + SE+S + + K + G V I
Sbjct: 14 EVEDVVXVNVRSIAEXGAYVSLLEYNNIEGXILLSELSRRRIRSINKLIRIGRNECVVVI 73
Query: 259 AYDAEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIGND 311
D EK + LS + + + +DK K V S + H ++ D
Sbjct: 74 RVDKEKGYIDLSKRRVSPEEAIKCEDKFTKS---KTVYSILRHVAEVLEYTKD 123
Score = 28.1 bits (61), Expect = 2.7
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 146 LSRSHSSLKNDANHIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEATE 205
LSR N IG+ +IRVDKE I++S++R V+ + ++ + + ++
Sbjct: 50 LSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR---VSPEEAIKCEDKFTK-SK 105
Query: 206 PVLGVVRQITPFGIFVEAKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKR 265
V ++R + + + + +E L V +KY + G AYDA K
Sbjct: 106 TVYSILRHVAEVLEYTKDEQLESL-----FQRTAWVFDDKYKRPGYG------AYDAFKH 154
Query: 266 RLS 268
+S
Sbjct: 155 AVS 157
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 29.6 bits (65), Expect = 0.92
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 453 EFAQKHKTDSVIQGKVVSIKDFGVFINADGIDV 485
EFA + K D V+Q K+ S+K+ + +NA +V
Sbjct: 174 EFAPEMKADQVLQDKLRSLKNVDIILNAQTTEV 206
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 29.6 bits (65), Expect = 0.92
Identities = 60/271 (22%), Positives = 112/271 (41%), Gaps = 44/271 (16%)
Query: 91 GEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVESQGVEYFLSRSH 150
GEH V +AIS E+ E E+ II + + L +
Sbjct: 18 GEHAVVYGYRAISMAIDLTSTIEIKETQEDEII-------------LNLNDLNKSLGLNL 64
Query: 151 SSLKN-DANHIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEATEPVLG 209
+ +KN + N+ G K C+ + +NI K F++N ++ +S L + +G
Sbjct: 65 NEIKNINPNNFGD-FKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIG 123
Query: 210 VVRQITPF-------------GIFV--EAKGIEGLVHYSEISHKG--PVNPEKYYK-EGD 251
++ ++ F G V E +G + S I++KG + K+ K +G+
Sbjct: 124 TIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKGE 183
Query: 252 -EVYVK----AIAYDAEKRRLS----LSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHY 302
E ++K I Y AEKR+ ++ A IE+ +EI ++ + + N E +
Sbjct: 184 FEEFLKNCKFLIVY-AEKRKKKTAELVNEVAKIENK-DEIFKEIDKVIDEALKIKNKEDF 241
Query: 303 GVFVDIGNDIEGFLHVSEISWDKNVSHPNNY 333
G + +++ L++S D+ V N +
Sbjct: 242 GKLMTKNHELLKKLNISTPKLDRIVDIGNRF 272
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 28.9 bits (63), Expect = 1.6
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 5/55 (9%)
Query: 324 DKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQVGDV 378
D SHP ++ + + K+I ID NRR +VS + N F KH + V
Sbjct: 167 DSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHAN-----FYPKHMIEKV 216
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 28.9 bits (63), Expect = 1.6
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 5/55 (9%)
Query: 324 DKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQVGDV 378
D SHP ++ + + K+I ID NRR +VS + N F KH + V
Sbjct: 166 DSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHAN-----FYPKHMIEKV 215
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 27.7 bits (60), Expect = 3.5
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 50 YAMVSVGGKTEGRLALNEITDEKGQLLYQKNDPIIVHVSEKGEHP---SVSYK---KAIS 103
Y ++ GG T+G L + + + Y+ D I H++ V+YK +
Sbjct: 322 YEVIKAGGFTKGGLNFDA---KVRRASYKVEDLFIGHIAGMDTFALGFKVAYKLVKDGVL 378
Query: 104 QQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVESQGVE 143
+ I+ K E I+EGK+ + YI++ + +E
Sbjct: 379 DKFIEEKYRSFREGIGRDIVEGKVDFEKLEEYIIDKETIE 418
>pdb|1EU3|A Chain A, Crystal Structure Of The Superantigen Smez-2 (Zinc Bound)
From Streptococcus Pyogenes
pdb|1EU3|B Chain B, Crystal Structure Of The Superantigen Smez-2 (Zinc Bound)
From Streptococcus Pyogenes
pdb|1ET6|B Chain B, Crystal Structure Of The Superantigen Smez-2 From
Streptococcus Pyogenes
pdb|1ET6|A Chain A, Crystal Structure Of The Superantigen Smez-2 From
Streptococcus Pyogenes
Length = 210
Score = 27.3 bits (59), Expect = 4.6
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 79 KNDPIIVHVSEKGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE 138
KN P+ + ++ G+ SV Y + IS K +E+ +I + + Y +
Sbjct: 102 KNIPVNLWIN--GKQISVPYNE-ISTNKTTVTAQEIDLKVRKFLIAQHQLYSSGSSY--K 156
Query: 139 SQGVEYFLSRSHSSLKNDANHIGKRVKACIIRVDKENHSINISR 182
S + + + + D ++G R K I +V K+N S NI +
Sbjct: 157 SGRLVFHTNDNSDKYSFDLFYVGYRDKESIFKVYKDNKSFNIDK 200
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 26.6 bits (57), Expect = 7.8
Identities = 25/106 (23%), Positives = 44/106 (40%), Gaps = 10/106 (9%)
Query: 122 IIEGKIVGKNKGGYIVESQGVEYFLSRSHSSLKN--DANHIGKRVKACIIRVDKENHSIN 179
I+ K+ N G ++ + +EY+L S+K D+ K + II +
Sbjct: 30 ILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIATPTNYN--- 86
Query: 180 ISRKRFFEVNDKRQLE-VSKELLEATEPVLGVVRQITPFGIFVEAK 224
SR +F D + +E V KE+L +++ P G E +
Sbjct: 87 -SRINYF---DTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMR 128
>pdb|1A8L| Protein Disulfide Oxidoreductase From Archaeon Pyrococcus Furiosus
Length = 226
Score = 26.6 bits (57), Expect = 7.8
Identities = 22/93 (23%), Positives = 42/93 (44%), Gaps = 3/93 (3%)
Query: 416 KDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSI-KDF 474
KDH + D +K + ++++ K+S T +E A++++ D + KDF
Sbjct: 32 KDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDF 91
Query: 475 GV--FINADGIDVLIKNEDLNPLKKDEIKIGQE 505
GV F G + ED+ + ++E + E
Sbjct: 92 GVRYFGLPAGHEFAAFLEDIVDVSREETNLMDE 124
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 26.6 bits (57), Expect = 7.8
Identities = 25/106 (23%), Positives = 44/106 (40%), Gaps = 10/106 (9%)
Query: 122 IIEGKIVGKNKGGYIVESQGVEYFLSRSHSSLKN--DANHIGKRVKACIIRVDKENHSIN 179
I+ K+ N G ++ + +EY+L S+K D+ K + II +
Sbjct: 30 ILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIATPTNYN--- 86
Query: 180 ISRKRFFEVNDKRQLE-VSKELLEATEPVLGVVRQITPFGIFVEAK 224
SR +F D + +E V KE+L +++ P G E +
Sbjct: 87 -SRINYF---DTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMR 128
>pdb|1DN2|A Chain A, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
pdb|1DN2|B Chain B, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
Length = 207
Score = 26.6 bits (57), Expect = 7.8
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 9/51 (17%)
Query: 494 PLKKDEIKIGQ--EITCVVVAIEKSNNKVR-------ASVHRLERKKEKEE 535
P KD + I + E+TCVVV + N +V+ VH + K +E+
Sbjct: 9 PKPKDTLMISRTPEVTCVVVDVSHENPEVKFNWYVDGVEVHNAKTKPREEQ 59
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.135 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,277,027
Number of Sequences: 13198
Number of extensions: 142279
Number of successful extensions: 299
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 37
length of query: 556
length of database: 2,899,336
effective HSP length: 93
effective length of query: 463
effective length of database: 1,671,922
effective search space: 774099886
effective search space used: 774099886
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)