BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645031|ref|NP_207201.1| phenylalanyl-tRNA
synthetase, alpha subunit (pheS) [Helicobacter pylori 26695]
(328 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-T... 219 4e-58
pdb|1MMA| X-Ray Structures Of The Mgadp, Mgatpgammas, And... 33 0.034
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain... 33 0.034
pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpa... 33 0.034
pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Doma... 32 0.076
pdb|1MMD| Truncated Head Of Myosin From Dictyostelium Dis... 32 0.099
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 32 0.13
pdb|1MMG| X-Ray Structures Of The Mgadp, Mgatpgammas, And... 32 0.13
pdb|1LVK| X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-... 32 0.13
pdb|1MMN| X-Ray Structures Of The Mgadp, Mgatpgammas, And... 32 0.13
pdb|1KIT| Vibrio Cholerae Neuraminidase 28 1.4
pdb|1QQE|A Chain A, Crystal Structure Of The Vesicular Tran... 28 1.9
pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalona... 27 2.4
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 26 7.1
pdb|1MGN| Metmyoglobin Mutant With Initiator Met, Asp 122... 25 9.3
pdb|1ESG|B Chain B, Restriction Endonuclease Bamhi Bound To... 25 9.3
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 25 9.3
>pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of Phenylalanyl-Trna
Synthetase Complexed With Phenylalanyl-Adenylate In The
Presence Of Manganese
pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl- Adenylate
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
Length = 350
Score = 219 bits (557), Expect = 4e-58
Identities = 139/357 (38%), Positives = 194/357 (53%), Gaps = 44/357 (12%)
Query: 4 LIERLEKVTNSKELEEARL---NALGKKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAF 60
L E L + N+++LEE + LGKKG+ + L L EE+ +E++ K A
Sbjct: 2 LEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAAL 61
Query: 61 EKAFEWKKKAIIELELEERLKKEKIDVSLFNAIKTSSS-HPLNYTKNKIIEFFTPLGYKL 119
E A E ++KA+ E L+E L++E++DVSL A S HP+ + +++E F LGY+
Sbjct: 62 EAALEAREKALEEAALKEALERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQA 121
Query: 120 EIGSLVEDDFHNFSALNLPPYHPARDMQDTFYF---------------KDHKLLRTHTSP 164
G VE +F NF ALN+P +HPARDM DTF+ + LLRTHTSP
Sbjct: 122 VEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP 181
Query: 165 VQIHTMQEQTPPIKMICLGETFR-RDYDLTHTPMFHQIEGLVVDQKGNIRFTHLKGVIED 223
+Q+ M TPP +++ G FR D TH +FHQ+EGLVV + I HLKG I +
Sbjct: 182 MQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGE--GIAMAHLKGAIYE 239
Query: 224 FLHYFFG-GVKLRWRSSFFPFTEPSAEVDISCVFCKQEGCRVCSHTGWLEVLGCGMVNNA 282
FG K+R++ +FPF EP A+ V+ + G WLE+ G GMV+
Sbjct: 240 LAQALFGPDSKVRFQPVYFPFVEPGAQF---AVWWPEGG-------KWLELGGAGMVHPK 289
Query: 283 VFEAI-----------GYENVSGFAFGMGIERLAMLTCQINDLRSFFETDLRVLESF 328
VF+A+ Y V+GFAFG+G+ERLAML I D+R FF L+ LE F
Sbjct: 290 VFQAVDAYRERLGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQF 346
>pdb|1MMA| X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes
Of The Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 33.5 bits (75), Expect = 0.034
Identities = 29/101 (28%), Positives = 47/101 (45%), Gaps = 6/101 (5%)
Query: 24 ALGKKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKK- 82
AL + + A + +HLN E+ ++ + K + + F W K I + +ER
Sbjct: 392 ALMEPRILAGRDLVAQHLNVEKSSSSRDAL--VKALYGRLFLWLVKKINNVLCQERKAYF 449
Query: 83 -EKIDVSLFNAIKTSSSHPL--NYTKNKIIEFFTPLGYKLE 120
+D+S F K +S L NYT K+ +FF +KLE
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLE 490
>pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride.
pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride
Length = 761
Score = 33.5 bits (75), Expect = 0.034
Identities = 29/101 (28%), Positives = 47/101 (45%), Gaps = 6/101 (5%)
Query: 24 ALGKKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKK- 82
AL + + A + +HLN E+ ++ + K + + F W K I + +ER
Sbjct: 392 ALMEPRILAGRDLVAQHLNVEKSSSSRDAL--VKALYGRLFLWLVKKINNVLCQERKAYF 449
Query: 83 -EKIDVSLFNAIKTSSSHPL--NYTKNKIIEFFTPLGYKLE 120
+D+S F K +S L NYT K+ +FF +KLE
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLE 490
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 33.5 bits (75), Expect = 0.034
Identities = 29/101 (28%), Positives = 47/101 (45%), Gaps = 6/101 (5%)
Query: 24 ALGKKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKK- 82
AL + + A + +HLN E+ ++ + K + + F W K I + +ER
Sbjct: 403 ALMEPRILAGRDLVAQHLNVEKSSSSRDAL--VKALYGRLFLWLVKKINNVLCQERKAYF 460
Query: 83 -EKIDVSLFNAIKTSSSHPL--NYTKNKIIEFFTPLGYKLE 120
+D+S F K +S L NYT K+ +FF +KLE
Sbjct: 461 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLE 501
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 32.3 bits (72), Expect = 0.076
Identities = 28/101 (27%), Positives = 47/101 (45%), Gaps = 6/101 (5%)
Query: 24 ALGKKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKK- 82
AL + + A + +HLN E+ ++ + K + + F W K I + +ER
Sbjct: 392 ALMEPRILAGRDLVAQHLNVEKSSSSRDAL--VKALYGRLFLWLVKKINNVLCQERKAYF 449
Query: 83 -EKIDVSLFNAIKTSSSHPL--NYTKNKIIEFFTPLGYKLE 120
+D+S F K +S L NYT K+ +FF +K+E
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVE 490
>pdb|1MMD| Truncated Head Of Myosin From Dictyostelium Discoideum Complexed
With Mgadp-Bef3
pdb|1MNE| Truncated Head Of Myosin From Dictyostelium Discoideum Complexed
With Mg-Pyrophosphate
pdb|1VOM| Complex Between Dictyostelium Myosin And Mgadp And Vanadate At
1.9a Resolution
pdb|1MND| Truncated Head Of Myosin From Dictyostelium Discoideum Complexed
With Mgadp-Alf4
Length = 762
Score = 32.0 bits (71), Expect = 0.099
Identities = 28/101 (27%), Positives = 46/101 (44%), Gaps = 6/101 (5%)
Query: 24 ALGKKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKK- 82
AL + + A + +HLN E+ ++ + K + + F W K I + ER
Sbjct: 392 ALMEPRILAGRDLVAQHLNVEKSSSSRDAL--VKALYGRLFLWLVKKINNVLCSERAAYF 449
Query: 83 -EKIDVSLFNAIKTSSSHPL--NYTKNKIIEFFTPLGYKLE 120
+D+S F K +S L NYT K+ +FF +K+E
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVE 490
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 31.6 bits (70), Expect = 0.13
Identities = 28/101 (27%), Positives = 46/101 (44%), Gaps = 6/101 (5%)
Query: 24 ALGKKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKK- 82
AL + + A + +HLN E+ ++ + K + + F W K I + ER
Sbjct: 392 ALMEPRILAGRDLVAQHLNVEKSSSSRDAL--VKALYGRLFLWLVKKINNVLCSERKAYF 449
Query: 83 -EKIDVSLFNAIKTSSSHPL--NYTKNKIIEFFTPLGYKLE 120
+D+S F K +S L NYT K+ +FF +K+E
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVE 490
>pdb|1MMG| X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes
Of The Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 31.6 bits (70), Expect = 0.13
Identities = 28/101 (27%), Positives = 46/101 (44%), Gaps = 6/101 (5%)
Query: 24 ALGKKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKK- 82
AL + + A + +HLN E+ ++ + K + + F W K I + ER
Sbjct: 392 ALMEPRILAGRDLVAQHLNVEKSSSSRDAL--VKALYGRLFLWLVKKINNVLCSERKAYF 449
Query: 83 -EKIDVSLFNAIKTSSSHPL--NYTKNKIIEFFTPLGYKLE 120
+D+S F K +S L NYT K+ +FF +K+E
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVE 490
>pdb|1LVK| X-Ray Crystal Structure Of The Mg (Dot)
2'(3')-O-(N-Methylanthraniloyl) Nucleotide Bound To
Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 31.6 bits (70), Expect = 0.13
Identities = 28/101 (27%), Positives = 46/101 (44%), Gaps = 6/101 (5%)
Query: 24 ALGKKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKK- 82
AL + + A + +HLN E+ ++ + K + + F W K I + ER
Sbjct: 392 ALMEPRILAGRDLVAQHLNVEKSSSSRDAL--VKALYGRLFLWLVKKINNVLCSERKAYF 449
Query: 83 -EKIDVSLFNAIKTSSSHPL--NYTKNKIIEFFTPLGYKLE 120
+D+S F K +S L NYT K+ +FF +K+E
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVE 490
>pdb|1MMN| X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes
Of The Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 31.6 bits (70), Expect = 0.13
Identities = 28/101 (27%), Positives = 46/101 (44%), Gaps = 6/101 (5%)
Query: 24 ALGKKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKK- 82
AL + + A + +HLN E+ ++ + K + + F W K I + ER
Sbjct: 392 ALMEPRILAGRDLVAQHLNVEKSSSSRDAL--VKALYGRLFLWLVKKINNVLCSERKAYF 449
Query: 83 -EKIDVSLFNAIKTSSSHPL--NYTKNKIIEFFTPLGYKLE 120
+D+S F K +S L NYT K+ +FF +K+E
Sbjct: 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVE 490
>pdb|1KIT| Vibrio Cholerae Neuraminidase
Length = 757
Score = 28.1 bits (61), Expect = 1.4
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 101 LNYTKNKIIEFFTPLGYKLEIGSLVEDDFHNFSALNLPPYHPARDMQDTFYFKDHKLLRT 160
L+ + N ++EF G + ++H F + LP +P+ +FYF D KL+R
Sbjct: 101 LDSSGNLVVEFEGQTGRTVLATGTAATEYHKFELVFLPGSNPSA----SFYF-DGKLIRD 155
Query: 161 HTSP 164
+ P
Sbjct: 156 NIQP 159
>pdb|1QQE|A Chain A, Crystal Structure Of The Vesicular Transport Protein Sec17
Length = 292
Score = 27.7 bits (60), Expect = 1.9
Identities = 23/87 (26%), Positives = 43/87 (48%), Gaps = 6/87 (6%)
Query: 51 KEIHHYKQAFEKAFEWKKKAIIELELE----ERLKKEKIDVSLFNAIKTSSSHPLNYTKN 106
KE++ +F KA +++KKA E E E K K + NA+ + + +T
Sbjct: 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110
Query: 107 KIIEFFTPLGYKLEIGSLVEDDFHNFS 133
+F +K E+G ++E+D H+++
Sbjct: 111 G--QFRRGANFKFELGEILENDLHDYA 135
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate
Decarboxylase At 2.3 Angstrom Resolution
Length = 416
Score = 27.3 bits (59), Expect = 2.4
Identities = 26/88 (29%), Positives = 38/88 (42%), Gaps = 9/88 (10%)
Query: 27 KKGVFADKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKKEKID 86
KK V + + QL E F + I H K FE +KAI+E + K+ D
Sbjct: 223 KKDVSSTQGXQLTVATSE---LFKERIEH---VVPKRFEVXRKAIVEKDFATFAKETXXD 276
Query: 87 VSLFNAIKTSSSHPLNY---TKNKIIEF 111
+ F+A S P+ Y T +II +
Sbjct: 277 SNSFHATCLDSFPPIFYXNDTSKRIISW 304
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 25.8 bits (55), Expect = 7.1
Identities = 13/44 (29%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 179 MICLGETFRRDYDLTHTPMFHQIEGLVVDQKGNIRFTHLKGVIE 222
+I + F+R HT + H I + ++K + +F HL G +E
Sbjct: 276 LIEIARAFKRK---DHTTVIHAIRSVEEEKKKDRKFKHLVGFLE 316
>pdb|1MGN| Metmyoglobin Mutant With Initiator Met, Asp 122 Replaced By Asn,
And His 64 Replaced By Tyr (Ins(M-V1),D122n,H64y)
Length = 154
Score = 25.4 bits (54), Expect = 9.3
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 33 DKFNQLKHLNGEEKNAFAKEIHHYKQAFEKAFE--WKKKAIIELEL----EERLKKEKID 86
+KF++ KHL E + ++++ Y A KKK E EL + K KI
Sbjct: 42 EKFDRFKHLKTEAEMKASEDLKKYGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIP 101
Query: 87 VSLFNAIKTS------SSHPLNY------TKNKIIEFF 112
+ I + S HP N+ NK +E F
Sbjct: 102 IKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELF 139
>pdb|1ESG|B Chain B, Restriction Endonuclease Bamhi Bound To A Non-Specific
Dna.
pdb|2BAM|B Chain B, Restriction Endonuclease Bamhi Complex With Dna And
Calcium Ions (Pre-Reactive Complex).
pdb|1ESG|A Chain A, Restriction Endonuclease Bamhi Bound To A Non-Specific
Dna.
pdb|3BAM|B Chain B, Restriction Endonuclease Bamhi Complex With Dna And
Manganese Ions (Post-Reactive Complex)
pdb|2BAM|A Chain A, Restriction Endonuclease Bamhi Complex With Dna And
Calcium Ions (Pre-Reactive Complex).
pdb|3BAM|A Chain A, Restriction Endonuclease Bamhi Complex With Dna And
Manganese Ions (Post-Reactive Complex)
pdb|1BHM|B Chain B, Restriction Endonuclease Bamhi Complex With Dna
pdb|1BAM| Restriction Endonuclease Bamhi (E.C.3.1.21.4)
pdb|1BHM|A Chain A, Restriction Endonuclease Bamhi Complex With Dna
Length = 213
Score = 25.4 bits (54), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 68 KKAIIELELEERLKKEKIDVSLFNAIKTSSSHPL 101
+K I E +E L K+K+ +N +KTS P+
Sbjct: 4 EKEFITDEAKELLSKDKLIQQAYNEVKTSICSPI 37
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 25.4 bits (54), Expect = 9.3
Identities = 23/102 (22%), Positives = 43/102 (41%), Gaps = 12/102 (11%)
Query: 3 TLIERLEKVTNSKE-------LEEARLNALGKKGVFADKFN-QLKHLNGEEKNAFAKEIH 54
T E+ + NSK L++ + L + F+ + NG+ K A +
Sbjct: 22 TFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEA----LE 77
Query: 55 HYKQAFEKAFEWKKKAIIELELEERLKKEKIDVSLFNAIKTS 96
+Q EK E +KA ++E E K+K+ ++ ++ S
Sbjct: 78 QARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQES 119
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,974,538
Number of Sequences: 13198
Number of extensions: 85720
Number of successful extensions: 159
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 17
length of query: 328
length of database: 2,899,336
effective HSP length: 89
effective length of query: 239
effective length of database: 1,724,714
effective search space: 412206646
effective search space used: 412206646
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)