BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA)
[Helicobacter pylori 26695]
(221 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of... 97 2e-21
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbo... 70 1e-13
pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbo... 70 1e-13
pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhy... 69 4e-13
pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Bet... 42 7e-05
pdb|1H29|A Chain A, Sulfate Respiration In Desulfovibrio Vu... 29 0.38
pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed Wi... 27 1.9
pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell... 27 1.9
pdb|3SEB| Staphylococcal Enterotoxin B 27 1.9
pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Termin... 25 7.1
pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Tr... 25 7.1
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a >gi|11513344... 25 7.1
>pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 96.7 bits (239), Expect = 2e-21
Identities = 62/197 (31%), Positives = 97/197 (48%), Gaps = 5/197 (2%)
Query: 6 GALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICNMGNV 65
G L F++ +Y++ LY L Q P + +C DSRV P+ + +PGE +V+ N+ N+
Sbjct: 20 GFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANL 79
Query: 66 NPPKTSYKESLSTIASIEYAIAHVGVQNLIICGHSDCGAC-GSVHLIHDETTKAKTPYIA 124
PP K + T A+IEYA+ H+ V N+++ GHS CG G + D T T +I
Sbjct: 80 VPPYDQAKYA-GTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGT--YSTDFIE 136
Query: 125 NWIQFLEPVKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASKNELKIF 184
W++ P K ++K FA+ E+ L NLL+Y F++E L +
Sbjct: 137 EWVKIGLPAKAKVKAQ-HGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALK 195
Query: 185 GWHYIIETGRIYNYNFE 201
G +Y G + E
Sbjct: 196 GGYYDFVKGSFELWGLE 212
>pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 70.5 bits (171), Expect = 1e-13
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 27/209 (12%)
Query: 16 EELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICNMGNVNPPKTSYKES 75
EE +E L QKP L+I C DSRV +TG +PGEL+V N+ N+
Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANL-----VIHTD 74
Query: 76 LSTIASIEYAIAHVGVQNLIICGHSDCGACGSVHLIHDETTKAKTPYIANWIQFLEPV-- 133
L+ ++ ++YA+ + V+++IICGH CG + + I NW+ + +
Sbjct: 75 LNCLSVVQYAVDVLEVEHIIICGHYGCGG------VQAAVENPELGLINNWLLHIRDIWF 128
Query: 134 --KEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASK--NELKIFGWHYI 189
L PQ +R LN Q+ N L + I + A K ++ I GW Y
Sbjct: 129 KHSSLLGEXPQ-----ERRLDTLCELNVXEQVYN-LGHSTIXQSAWKRGQKVTIHGWAYG 182
Query: 190 IETGRIYNYNFESHFFEPIGETIKQRKSH 218
I G + + + + ET++QR H
Sbjct: 183 IHDGLLRDLDVTA----TNRETLEQRYRH 207
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 70.5 bits (171), Expect = 1e-13
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 27/209 (12%)
Query: 16 EELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICNMGNVNPPKTSYKES 75
EE +E L QKP L+I C DSRV +TG +PGEL+V N+ N+
Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANL-----VIHTD 74
Query: 76 LSTIASIEYAIAHVGVQNLIICGHSDCGACGSVHLIHDETTKAKTPYIANWIQFLEPV-- 133
L+ ++ ++YA+ + V+++IICGH CG + + I NW+ + +
Sbjct: 75 LNCLSVVQYAVDVLEVEHIIICGHYGCGG------VQAAVENPELGLINNWLLHIRDIWF 128
Query: 134 --KEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASK--NELKIFGWHYI 189
L PQ +R LN Q+ N L + I + A K ++ I GW Y
Sbjct: 129 KHSSLLGEMPQ-----ERRLDTLCELNVMEQVYN-LGHSTIMQSAWKRGQKVTIHGWAYG 182
Query: 190 IETGRIYNYNFESHFFEPIGETIKQRKSH 218
I G + + + + ET++QR H
Sbjct: 183 IHDGLLRDLDVTA----TNRETLEQRYRH 207
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 68.9 bits (167), Expect = 4e-13
Identities = 46/218 (21%), Positives = 101/218 (46%), Gaps = 16/218 (7%)
Query: 2 KAFLGALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICN 61
+ F+ +++ ++ + + +L Q P L+I C DSRV N I GE++V N
Sbjct: 292 RVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRN 351
Query: 62 MGNVNPPKTSYKESLSTIASIEYAIAHVGVQNLIICGHSDCGACGSVHLIHDETTKAKTP 121
+ N +S ++ ++YA+ ++ V+ +++CGH CG C + ++
Sbjct: 352 IAN-----QCIHSDMSFLSVLQYAVQYLKVKRVVVCGHYACGGCAAA------LGDSRLG 400
Query: 122 YIANWIQFLEPVKEELKNHPQFSNHFAKRSWLTE--RLNARLQLNNLLSYDFIQEK-ASK 178
I NW++ + V+ N + S + L +N Q++N+ + +Q+ +
Sbjct: 401 LIDNWLRHIRDVRRH--NQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAG 458
Query: 179 NELKIFGWHYIIETGRIYNYNFESHFFEPIGETIKQRK 216
EL++ G Y + G++ + + + IG+ + ++
Sbjct: 459 QELEVQGVVYGVGDGKLRDMGVVAKANDDIGQIFRTKQ 496
Score = 59.3 bits (142), Expect = 3e-10
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 14/178 (7%)
Query: 20 ELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICNMGNVNPPKTSYKESLSTI 79
E + L Q P L+I C DSRV N + GE++V N+ N +S +
Sbjct: 56 EFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIAN-----QCIHSDISFL 110
Query: 80 ASIEYAIAHVGVQNLIICGHSDCGACGSVHLIHDETTKAKTPYIANWIQFLEPVKE-ELK 138
+ ++YA+ ++ V+++++CGH CG G+ + D ++ I NW++ + V+ K
Sbjct: 111 SVLQYAVQYLKVKHILVCGHYGCG--GAKAALGD----SRLGLIDNWLRHIRDVRRMNAK 164
Query: 139 NHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEK-ASKNELKIFGWHYIIETGRI 195
+ + + + L E LN Q++N+ + +Q+ + EL + G Y + G++
Sbjct: 165 YLDKCKDGDEELNRLIE-LNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDGKL 221
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|C Chain C, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|E Chain E, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|B Chain B, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|D Chain D, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|F Chain F, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
Length = 170
Score = 41.6 bits (96), Expect = 7e-05
Identities = 31/97 (31%), Positives = 44/97 (44%), Gaps = 16/97 (16%)
Query: 9 EFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNL--ITGTKPGELYVICNMGNVN 66
E Q+ + +L +L K P I+C+DSR++ L G G+ VI N GN+
Sbjct: 9 ENQDFRFRDLSDL------KHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIV 62
Query: 67 PPKTSYKESLSTIASIEYAIAHVGVQNLIICGHSDCG 103
I S AI +G +II GH+DCG
Sbjct: 63 DD--------GVIRSAAVAIYALGDNEIIIVGHTDCG 91
>pdb|1H29|A Chain A, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|B Chain B, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|C Chain C, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|D Chain D, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
Length = 514
Score = 29.3 bits (64), Expect = 0.38
Identities = 31/118 (26%), Positives = 45/118 (37%), Gaps = 19/118 (16%)
Query: 2 KAFLGALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICN 61
K L + +N ELKE+Y H I C TG + GE +
Sbjct: 59 KMSLKFMRLDDNSAAELKEIY---------HANCIGCHTDLAKAGKKTGPQDGECR---S 106
Query: 62 MGNVNPPKTSYKESLSTIASIEYAIAHVGVQNLIICG--HSDCGACGSVHLIHDETTK 117
N P S + + S+ Y HV + + G +CGAC H ++DE +K
Sbjct: 107 CHNPKPSAASSWKEIGFDKSLHYR--HVASKAIKPVGDPQKNCGAC---HHVYDEASK 159
>pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SE4| Staphylococcal Enterotoxin B Complexed With Lactose
pdb|1SE3| Staphylococcal Enterotoxin B Complexed With Gm3 Trisaccharide
pdb|1SBB|B Chain B, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1D5Z|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptidomimetic And Seb
pdb|1D5M|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With Peptide
And Seb
pdb|1D5X|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Dipeptide Mimetic And Seb
pdb|1D6E|C Chain C, Crystal Structure Of Hla-Dr4 Complex With Peptidomimetic
And Seb
pdb|2SEB|D Chain D, X-Ray Crystal Structure Of Hla-Dr4 Complexed With A
Peptide From Human Collagen Ii
Length = 239
Score = 26.9 bits (58), Expect = 1.9
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 165 NLLSYDFI--QEKASKNELKIFGWHYIIETGRIYNYN 199
NLLS+D ++K + EL HY+++ ++Y +N
Sbjct: 142 NLLSFDVQTNKKKVTAQELDYLTRHYLVKNKKLYEFN 178
>pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
pdb|1GOZ|B Chain B, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
Length = 239
Score = 26.9 bits (58), Expect = 1.9
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 165 NLLSYDFI--QEKASKNELKIFGWHYIIETGRIYNYN 199
NLLS+D ++K + EL HY+++ ++Y +N
Sbjct: 142 NLLSFDVQTNKKKVTAQELDYLTRHYLVKNKKLYEFN 178
>pdb|3SEB| Staphylococcal Enterotoxin B
Length = 238
Score = 26.9 bits (58), Expect = 1.9
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 165 NLLSYDFI--QEKASKNELKIFGWHYIIETGRIYNYN 199
NLLS+D ++K + EL HY+++ ++Y +N
Sbjct: 142 NLLSFDVQTNKKKVTAQELDYLTRHYLVKNKKLYEFN 178
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of
Yeast Eif4a
Length = 165
Score = 25.0 bits (53), Expect = 7.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 1 MKAFLGALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNLIT 49
+K F +E +E +YE L +LY+S+ Q I C R V L T
Sbjct: 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQ----AVIFCNTRRKVEELTT 48
>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7O|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
Length = 399
Score = 25.0 bits (53), Expect = 7.1
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 32 HTLFISCVDSRVVPNLITGTKPGELYVICNMGNVN----PPKTSYKESLSTIASIEYAIA 87
HT+F S +D ++ IT T P + + I MG N P + + S A+
Sbjct: 216 HTVFQS-IDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFT 274
Query: 88 HVGVQNLIICGHSDCG 103
+G + IC + +CG
Sbjct: 275 TLGYKACEIC-YKECG 289
>pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
Length = 394
Score = 25.0 bits (53), Expect = 7.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 1 MKAFLGALEFQENEYEELKELYESLKTKQKPHTLFISCVDSRVVPNLIT 49
+K F +E +E +YE L +LY+S+ Q I C R V L T
Sbjct: 233 IKQFYVNVEEEEYKYECLTDLYDSISVTQ----AVIFCNTRRKVEELTT 277
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,326,356
Number of Sequences: 13198
Number of extensions: 52866
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 13
length of query: 221
length of database: 2,899,336
effective HSP length: 85
effective length of query: 136
effective length of database: 1,777,506
effective search space: 241740816
effective search space used: 241740816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)