BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645032|ref|NP_207202.1| protein kinase C inhibitor
(SP:P16436) [Helicobacter pylori 26695]
(104 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4RHN| Histidine Triad Nucleotide-Binding Protein (Hin... 75 1e-15
pdb|1KPE|A Chain A, Pkci-Transition State Analog >gi|311450... 74 2e-15
pdb|6FIT| Fhit-Transition State Analog >gi|3114520|pdb|4F... 40 5e-05
pdb|2FIT| Fhit (Fragile Histidine Triad Protein) >gi|2781... 39 7e-05
pdb|2FHI| Substrate Analog (Ib2) Complex With The His 96 ... 37 3e-04
pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nit... 37 4e-04
pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Co... 25 0.99
pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Co... 25 0.99
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Comp... 25 0.99
pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Bindi... 24 2.9
pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Recept... 24 2.9
pdb|1M7S|A Chain A, Crystal Structure Analysis Of Catalase ... 23 3.8
pdb|1JSM|B Chain B, Structure Of H5 Avian Haemagglutinin >g... 23 4.9
pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. J... 23 4.9
pdb|1YCS|B Chain B, P53-53bp2 Complex 23 4.9
pdb|1AXR| Cooperativity Between Hydrogen-Bonding And Char... 23 6.4
pdb|5GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State... 23 6.4
pdb|1C50|A Chain A, Identification And Structural Character... 23 6.4
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glyc... 23 6.4
pdb|1A8I| Spirohydantoin Inhibitor Of Glycogen Phosphoryl... 23 6.4
pdb|1NOJ| Complex Of Glycogen Phosphorylase With A Transi... 23 6.4
pdb|8GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State... 23 6.4
pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase 23 6.4
pdb|1ABB|A Chain A, Glycogen Phosphorylase (E.C.2.4.1.1) Co... 23 6.4
>pdb|4RHN| Histidine Triad Nucleotide-Binding Protein (Hint) From Rabbit
Complexed With Adenosine
pdb|3RHN| Histidine Triad Nucleotide-Binding Protein (Hint) From Rabbit
Complexed With Gmp
pdb|6RHN| Histidine Triad Nucleotide-Binding Protein (Hint) From Rabbit
Without Nucleotide
pdb|5RHN| Histidine Triad Nucleotide-Binding Protein (Hint) From Rabbit
Complexed With 8-Br-Amp
Length = 115
Score = 74.7 bits (182), Expect = 1e-15
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 3 VFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNG---ITPELMAQM 59
+F KII+ EIP I E+++ L+F+DI+P+A H LVIPK+ I + L+ +
Sbjct: 7 IFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHL 66
Query: 60 TSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSG 101
+ LG+K KGY+++ N G + GQ V H+H H+L G
Sbjct: 67 MIVGKKCAADLGLK-KGYRMVVNEGSDGGQSVYHVHLHVLGG 107
>pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
pdb|1KPF| Pkci-Substrate Analog
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
Length = 126
Score = 73.9 bits (180), Expect = 2e-15
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 3 VFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITPE---LMAQM 59
+F KII+ EIP I E++R L+F+DI+P+A H LVIPK+ I + + L+ +
Sbjct: 18 IFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHL 77
Query: 60 TSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSG 101
+ LG+ KGY+++ N G + GQ V H+H H+L G
Sbjct: 78 MIVGKKCAADLGL-NKGYRMVVNEGSDGGQSVYHVHLHVLGG 118
>pdb|6FIT| Fhit-Transition State Analog
pdb|4FIT| Fhit-Apo
pdb|1FHI| Substrate Analog (Ib2) Complex With The Fragile Histidine Triad
Protein, Fhit
Length = 147
Score = 39.7 bits (91), Expect = 5e-05
Identities = 31/92 (33%), Positives = 50/92 (53%), Gaps = 15/92 (16%)
Query: 24 LSFYDINPKAKV--HALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLG-IKEK---GY 77
LSF +N K V H LV P + ++ F+ + P+ +A + F+ +++G + EK G
Sbjct: 21 LSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADL----FQTTQRVGTVVEKHFHGT 76
Query: 78 KLLTNV--GKNAGQEVMHLHFHIL---SGDKH 104
L ++ G AGQ V H+H H+L +GD H
Sbjct: 77 SLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFH 108
>pdb|2FIT| Fhit (Fragile Histidine Triad Protein)
pdb|1FIT| Fhit (Fragile Histidine Triad Protein)
pdb|5FIT| Fhit-Substrate Analog
pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
Length = 147
Score = 39.3 bits (90), Expect = 7e-05
Identities = 29/92 (31%), Positives = 47/92 (50%), Gaps = 15/92 (16%)
Query: 24 LSFYDINPKAKV--HALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLG-IKEKGYK-- 78
LSF +N K V H LV P + ++ F+ + P+ +A + F+ +++G + EK +
Sbjct: 21 LSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADL----FQTTQRVGTVVEKHFHGT 76
Query: 79 ---LLTNVGKNAGQEVMHLHFHIL---SGDKH 104
G AGQ V H+H H+L +GD H
Sbjct: 77 SLTFSXQDGPEAGQTVKHVHVHVLPRKAGDFH 108
>pdb|2FHI| Substrate Analog (Ib2) Complex With The His 96 Asn Substitution Of
The Fragile Histidine Triad Protein, Fhit
Length = 147
Score = 37.0 bits (84), Expect = 3e-04
Identities = 30/92 (32%), Positives = 50/92 (53%), Gaps = 15/92 (16%)
Query: 24 LSFYDINPKAKV--HALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLG-IKEK---GY 77
LSF +N K V H LV P + ++ F+ + P+ +A + F+ +++G + EK G
Sbjct: 21 LSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADL----FQTTQRVGTVVEKHFHGT 76
Query: 78 KLLTNV--GKNAGQEVMHLHFHIL---SGDKH 104
L ++ G AGQ V H++ H+L +GD H
Sbjct: 77 SLTFSMQDGPEAGQTVKHVNVHVLPRKAGDFH 108
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 36.6 bits (83), Expect = 4e-04
Identities = 25/80 (31%), Positives = 40/80 (49%), Gaps = 10/80 (12%)
Query: 26 FYDINPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKL-GIKEKGYKLLTNV- 83
F ++ P H LV PK+ + +T T+ +F V +K+ + EK + + +
Sbjct: 321 FVNLKPVTDGHVLVSPKRVVPRLTDLTDA----ETADLFIVAKKVQAMLEKHHNVTSTTI 376
Query: 84 ----GKNAGQEVMHLHFHIL 99
GK+AGQ V H+H HIL
Sbjct: 377 CVQDGKDAGQTVPHVHIHIL 396
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 25.4 bits (54), Expect = 0.99
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N AK+H+ ++ + +DF+ + P+ T+ GI + + LL N G
Sbjct: 452 VNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTN---------GITPRRWLLLCNPG 498
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
Length = 847
Score = 25.4 bits (54), Expect = 0.99
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N AK+H+ ++ + +DF+ + P+ T+ GI + + LL N G
Sbjct: 453 VNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTN---------GITPRRWLLLCNPG 499
>pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
Length = 846
Score = 25.4 bits (54), Expect = 0.99
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N AK+H+ ++ + +DF+ + P+ T+ GI + + LL N G
Sbjct: 452 VNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTN---------GITPRRWLLLCNPG 498
>pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|1E3K|A Chain A, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
Length = 258
Score = 23.9 bits (50), Expect = 2.9
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 60 TSFIFEVVEKLGIKEKG-------YKLLTNVGKNAGQEVMHLHFHILS 100
+S+I E+++ +G+++KG + LT + N V LH + L+
Sbjct: 171 SSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLN 218
>pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|1A28|A Chain A, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
Length = 256
Score = 23.9 bits (50), Expect = 2.9
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 60 TSFIFEVVEKLGIKEKG-------YKLLTNVGKNAGQEVMHLHFHILS 100
+S+I E+++ +G+++KG + LT + N V LH + L+
Sbjct: 169 SSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLN 216
>pdb|1M7S|A Chain A, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|B Chain B, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|C Chain C, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|D Chain D, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
Length = 484
Score = 23.5 bits (49), Expect = 3.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTS 61
+N K +VH + +S+Q + P+ +AQ+ S
Sbjct: 199 VNAKGEVHYVKFHWKSLQGIKNLDPKEVAQVQS 231
>pdb|1JSM|B Chain B, Structure Of H5 Avian Haemagglutinin
pdb|1JSN|B Chain B, Structure Of Avian H5 Haemagglutinin Complexed With Lsta
Receptro Analog
pdb|1JSO|B Chain B, Structure Of Avian H5 Haemagglutinin Bound To Lstc
Receptor Analog
Length = 176
Score = 23.1 bits (48), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 17 ILENERFLSFYDINPK 32
++ENER L F+D N K
Sbjct: 101 LMENERTLDFHDSNVK 116
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 23.1 bits (48), Expect = 4.9
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 72 IKEKGY-KLLTNVGKNAGQEVMH 93
+K++ Y K++TN AG+EV+H
Sbjct: 115 VKDRKYNKIITNPPIRAGKEVLH 137
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 23.1 bits (48), Expect = 4.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 58 QMTSFIFEVVEKLGIKEKG 76
Q + F++ V EK+GI KG
Sbjct: 153 QCSQFLYGVQEKMGIMNKG 171
>pdb|1AXR| Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1GPY| Glycogen Phosphorylase B (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose-6-Phosphate
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|1PYG|A Chain A, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
pdb|1PYG|C Chain C, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
pdb|1PYG|D Chain D, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
pdb|1PYG|B Chain B, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
Length = 842
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N A++H+ ++ K +DF + P T+ GI + + +L N G
Sbjct: 452 VNGVARIHSEILKKTIFKDFYELEPHKFQNKTN---------GITPRRWLVLCNPG 498
>pdb|5GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose-1-Methylene-Phosphate And Maltohexaose
pdb|3GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose-1-Phosphate
pdb|4GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
2-Fluoro-2-Deoxy-Alpha-D-Glucose-1-Phosphate
pdb|2GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-Monophosphate
pdb|6GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Heptulose 2-Phosphate And Maltoheptaose And AMP
pdb|1GPA|A Chain A, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|1GPA|C Chain C, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|1GPA|D Chain D, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|1GPA|B Chain B, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|7GPB|A Chain A, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|7GPB|B Chain B, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|7GPB|C Chain C, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|7GPB|D Chain D, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|9GPB|A Chain A, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|9GPB|B Chain B, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|9GPB|D Chain D, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|9GPB|C Chain C, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|1GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State)
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
Length = 842
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N A++H+ ++ K +DF + P T+ GI + + +L N G
Sbjct: 452 VNGVARIHSEILKKTIFKDFYELEPHKFQNKTN---------GITPRRWLVLCNPG 498
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N A++H+ ++ K +DF + P T+ GI + + +L N G
Sbjct: 440 VNGVARIHSEILKKTIFKDFYELEPHKFQNKTN---------GITPRRWLVLCNPG 486
>pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
Length = 842
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N A++H+ ++ K +DF + P T+ GI + + +L N G
Sbjct: 452 VNGVARIHSEILKKTIFKDFYELEPHKFQNKTN---------GITPRRWLVLCNPG 498
>pdb|1A8I| Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN| 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
Length = 842
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N A++H+ ++ K +DF + P T+ GI + + +L N G
Sbjct: 452 VNGVARIHSEILKKTIFKDFYELEPHKFQNKTN---------GITPRRWLVLCNPG 498
>pdb|1NOJ| Complex Of Glycogen Phosphorylase With A Transition State Analogue
Nojirimycin Tetrazole And Phosphate In The T State
pdb|1NOK| Complex Of Glycogen Phosphorylase With A Transition State Analogue
Nojirimycin Tetrazole And Phosphate In The T State
pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
Length = 842
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N A++H+ ++ K +DF + P T+ GI + + +L N G
Sbjct: 452 VNGVARIHSEILKKTIFKDFYELEPHKFQNKTN---------GITPRRWLVLCNPG 498
>pdb|8GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With AMP
Length = 832
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N A++H+ ++ K +DF + P T+ GI + + +L N G
Sbjct: 442 VNGVARIHSEILKKTIFKDFYELEPHKFQNKTN---------GITPRRWLVLCNPG 488
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 22.7 bits (47), Expect = 6.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 63 IFEVVEKLGIKEKGYKLLTNVGKNAGQEV 91
+FE+V+K G+K + G N G V
Sbjct: 69 LFELVQKAGLKLQAIMSFHQCGGNVGDAV 97
>pdb|1ABB|A Chain A, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
pdb|1ABB|B Chain B, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
pdb|1ABB|C Chain C, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
pdb|1ABB|D Chain D, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
Length = 828
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 29 INPKAKVHALVIPKQSIQDFNGITPELMAQMTSFIFEVVEKLGIKEKGYKLLTNVG 84
+N A++H+ ++ K +DF + P T+ GI + + +L N G
Sbjct: 443 VNGVARIHSEILKKTIFKDFYELEPHKFQNKTN---------GITPRRWLVLCNPG 489
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.140 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,462
Number of Sequences: 13198
Number of extensions: 20033
Number of successful extensions: 60
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 24
length of query: 104
length of database: 2,899,336
effective HSP length: 80
effective length of query: 24
effective length of database: 1,843,496
effective search space: 44243904
effective search space used: 44243904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)