BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645034|ref|NP_207204.1| hypothetical protein
[Helicobacter pylori 26695]
(196 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ITI| The High Resolution Three-Dimensional Solution ... 32 0.064
pdb|1NOL| Oxygenated Hemocyanin (Subunit Type Ii) >gi|494... 30 0.19
pdb|1LL1| Hydroxo Bridge Met Form Hemocyanin From Limulus 30 0.19
pdb|1OXY| Hemocyanin Subunit Ii Complexed With Oxygen 30 0.19
pdb|1HZI|A Chain A, Interleukin-4 Mutant E9a 30 0.24
pdb|1RCB| Interleukin 4 >gi|7245490|pdb|1IAR|A Chain A, I... 30 0.24
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 30 0.24
pdb|1ITL| Interleukin 4 (Il-4) Mutant With Additional Met... 30 0.24
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 29 0.32
pdb|1HIJ| Interleukin-4 Mutant With Arg 88 Replaced With ... 28 0.71
pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonucleas... 25 6.0
pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex >g... 25 6.0
pdb|1GV1|A Chain A, Structural Basis For Thermophilic Prote... 25 6.0
pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Prote... 25 6.0
pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2) ... 25 7.8
>pdb|1ITI| The High Resolution Three-Dimensional Solution Structure Of Human
Interleukin-4 Determined By Multi-Dimensional
Heteronuclear Magnetic Resonance Spectroscopy
pdb|1BBN| Interleukin 4 (Nmr, Minimized Average Structure)
pdb|1BCN| Interleukin 4 (Nmr, 22 Structures)
Length = 133
Score = 31.6 bits (70), Expect = 0.064
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 102 RSLEPVFVEKTINTILNLHDKVIGAKDETISAFKNENMFLKDALISMQ--EVYEEDKKTI 159
++L + +KT+ T L + D +KD T + F + A + Q +E+D + +
Sbjct: 16 KTLNSLTEQKTLCTELTVTDIFAASKDTT-----EKETFCRAATVLRQFYSHHEKDTRCL 70
Query: 160 DLLRDELNQAREEIEFMKRKYRLMWG 185
+ ++ ++ I F+KR R +WG
Sbjct: 71 GATAQQFHRHKQLIRFLKRLDRNLWG 96
>pdb|1NOL| Oxygenated Hemocyanin (Subunit Type Ii)
pdb|1LLA| Hemocyanin (Subunit Type Ii)
Length = 628
Score = 30.0 bits (66), Expect = 0.19
Identities = 23/64 (35%), Positives = 37/64 (56%), Gaps = 5/64 (7%)
Query: 35 LSALAWLELEEFSRLSGLPKERILELVNLGKIKSKISSNKLLIDASSGTNALIKKVENSL 94
L L +E+ E R+ +ERIL+ ++LG + S+ S+K L D GT+ L VE+S
Sbjct: 258 LRDLGDIEISEMVRM----RERILDSIHLGYVISEDGSHKTL-DELHGTDILGALVESSY 312
Query: 95 ISMD 98
S++
Sbjct: 313 ESVN 316
>pdb|1LL1| Hydroxo Bridge Met Form Hemocyanin From Limulus
Length = 590
Score = 30.0 bits (66), Expect = 0.19
Identities = 23/64 (35%), Positives = 37/64 (56%), Gaps = 5/64 (7%)
Query: 35 LSALAWLELEEFSRLSGLPKERILELVNLGKIKSKISSNKLLIDASSGTNALIKKVENSL 94
L L +E+ E R+ +ERIL+ ++LG + S+ S+K L D GT+ L VE+S
Sbjct: 234 LRDLGDIEISEMVRM----RERILDSIHLGYVISEDGSHKTL-DELHGTDILGALVESSY 288
Query: 95 ISMD 98
S++
Sbjct: 289 ESVN 292
>pdb|1OXY| Hemocyanin Subunit Ii Complexed With Oxygen
Length = 628
Score = 30.0 bits (66), Expect = 0.19
Identities = 23/64 (35%), Positives = 37/64 (56%), Gaps = 5/64 (7%)
Query: 35 LSALAWLELEEFSRLSGLPKERILELVNLGKIKSKISSNKLLIDASSGTNALIKKVENSL 94
L L +E+ E R+ +ERIL+ ++LG + S+ S+K L D GT+ L VE+S
Sbjct: 258 LRDLGDIEISEMVRM----RERILDSIHLGYVISEDGSHKTL-DELHGTDILGALVESSY 312
Query: 95 ISMD 98
S++
Sbjct: 313 ESVN 316
>pdb|1HZI|A Chain A, Interleukin-4 Mutant E9a
Length = 129
Score = 29.6 bits (65), Expect = 0.24
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 102 RSLEPVFVEKTINTILNLHDKVIGAKDETISAFKNENMFLKDALISMQ--EVYEEDKKTI 159
++L + +KT+ T L + D +K+ T + F + A + Q +E+D + +
Sbjct: 12 KTLNSLTEQKTLCTELTVTDIFAASKNTT-----EKETFCRAATVLRQFYSHHEKDTRCL 66
Query: 160 DLLRDELNQAREEIEFMKRKYRLMWG 185
+ ++ ++ I F+KR R +WG
Sbjct: 67 GATAQQFHRHKQLIRFLKRLDRNLWG 92
>pdb|1RCB| Interleukin 4
pdb|1IAR|A Chain A, Interleukin-4 RECEPTOR ALPHA CHAIN COMPLEX
pdb|2INT| Interleukin-4
pdb|1HIK| Interleukin-4 (Wild-Type)
pdb|1CYL| Interleukin 4 (Nmr, 20 Structures)
pdb|2CYK| Interleukin 4 (Nmr, Minimized Average Structure)
Length = 129
Score = 29.6 bits (65), Expect = 0.24
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 102 RSLEPVFVEKTINTILNLHDKVIGAKDETISAFKNENMFLKDALISMQ--EVYEEDKKTI 159
++L + +KT+ T L + D +K+ T + F + A + Q +E+D + +
Sbjct: 12 KTLNSLTEQKTLCTELTVTDIFAASKNTT-----EKETFCRAATVLRQFYSHHEKDTRCL 66
Query: 160 DLLRDELNQAREEIEFMKRKYRLMWG 185
+ ++ ++ I F+KR R +WG
Sbjct: 67 GATAQQFHRHKQLIRFLKRLDRNLWG 92
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 29.6 bits (65), Expect = 0.24
Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 133 AFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKYRLMWGKVADMSS 192
A ++ + L+D L+S+Q+ + + +D + L A+E++E ++K AD++S
Sbjct: 31 AAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKK---ATDAEADVAS 87
Query: 193 VNKK 196
+N++
Sbjct: 88 LNRR 91
>pdb|1ITL| Interleukin 4 (Il-4) Mutant With Additional Met At N-Terminus
(Nmr, Energy-Minimized Structure)
pdb|1ITM| Interleukin 4 (Il-4) (Nmr, Minimized Average Structure)
Length = 130
Score = 29.6 bits (65), Expect = 0.24
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 102 RSLEPVFVEKTINTILNLHDKVIGAKDETISAFKNENMFLKDALISMQ--EVYEEDKKTI 159
++L + +KT+ T L + D +K+ T + F + A + Q +E+D + +
Sbjct: 13 KTLNSLTEQKTLCTELTVTDIFAASKNTT-----EKETFCRAATVLRQFYSHHEKDTRCL 67
Query: 160 DLLRDELNQAREEIEFMKRKYRLMWG 185
+ ++ ++ I F+KR R +WG
Sbjct: 68 GATAQQFHRHKQLIRFLKRLDRNLWG 93
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 29.3 bits (64), Expect = 0.32
Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 133 AFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKYRLMWGKVADMSS 192
A ++ + L+D L+S+Q+ + + +D + L A+E++E ++K AD++S
Sbjct: 31 AAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKK---ATDAEADVAS 87
Query: 193 VNKK 196
+N++
Sbjct: 88 LNRR 91
>pdb|1HIJ| Interleukin-4 Mutant With Arg 88 Replaced With Gln (R88q)
Length = 129
Score = 28.1 bits (61), Expect = 0.71
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 102 RSLEPVFVEKTINTILNLHDKVIGAKDETISAFKNENMFLKDALISMQ--EVYEEDKKTI 159
++L + +KT+ T L + D +K+ T + F + A + Q +E+D + +
Sbjct: 12 KTLNSLTEQKTLCTELTVTDIFAASKNTT-----EKETFCRAATVLRQFYSHHEKDTRCL 66
Query: 160 DLLRDELNQAREEIEFMKRKYRLMWG 185
+ ++ ++ I F+KR + +WG
Sbjct: 67 GATAQQFHRHKQLIRFLKRLDQNLWG 92
>pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From
Hyperthermophilic Archaeon, Thermococcus Kodakaraensis
Kod1
Length = 213
Score = 25.0 bits (53), Expect = 6.0
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 91 ENSLISMD----MNGRSLEPVFVEKTINTILNLHDK---------VIGAKDETISAFKNE 137
ENSL ++ + + L P EK N IL + D VIG+++ T++ F+ E
Sbjct: 27 ENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLNEFEVE 86
Query: 138 N 138
N
Sbjct: 87 N 87
>pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
Length = 1224
Score = 25.0 bits (53), Expect = 6.0
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 131 ISAFKNENMFLKDALISMQEVYEEDKKTI-----DLLRDELNQAREEIEFMKRKYRLMWG 185
ISAF E + L S + + + I L+ ++L Q E + + RKY + +G
Sbjct: 34 ISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFG 93
Query: 186 KV 187
K+
Sbjct: 94 KI 95
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 25.0 bits (53), Expect = 6.0
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 14/54 (25%)
Query: 17 QEVEDK-ERESKEPVV------LEDLSALAWLELEEFSRLSGLPKERILELVNL 63
+EV D + SK P++ L+ ++ +AW+ SGLPKER++ + +
Sbjct: 99 KEVTDNIMKHSKNPIIIVVSNPLDIMTHVAWVR-------SGLPKERVIGMAGV 145
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 25.0 bits (53), Expect = 6.0
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 14/54 (25%)
Query: 17 QEVEDK-ERESKEPVV------LEDLSALAWLELEEFSRLSGLPKERILELVNL 63
+EV D + SK P++ L+ ++ +AW+ SGLPKER++ + +
Sbjct: 99 KEVTDNIMKHSKNPIIIVVSNPLDIMTHVAWVR-------SGLPKERVIGMAGV 145
>pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|B Chain B, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|D Chain D, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|F Chain F, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|C Chain C, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|E Chain E, Human Vimentin Coil 2b Fragment (Cys2)
Length = 84
Score = 24.6 bits (52), Expect = 7.8
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 131 ISAFKNENMFLKDALISMQEVYEED----KKTIDLLRDELNQAREEIEFMKRKYR 181
+ A K N L+ + M+E + + + TI L+DE+ +EE+ R+Y+
Sbjct: 3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQ 57
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.311 0.130 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 960,916
Number of Sequences: 13198
Number of extensions: 35763
Number of successful extensions: 92
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 19
length of query: 196
length of database: 2,899,336
effective HSP length: 83
effective length of query: 113
effective length of database: 1,803,902
effective search space: 203840926
effective search space used: 203840926
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)