BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645035|ref|NP_207205.1| biotin sulfoxide reductase
(bisC) [Helicobacter pylori 26695]
(796 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DMS| Structure Of Dmso Reductase 610 e-175
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence... 603 e-173
pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepe... 603 e-173
pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase Fr... 603 e-173
pdb|4DMR| Reduced Dmso Reductase From Rhodobacter Capsula... 602 e-173
pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sp... 578 e-165
pdb|1TMO| Trimethylamine N-Oxide Reductase From Shewanell... 484 e-137
pdb|1FDO| Oxidized Form Of Formate Dehydrogenase H From E... 117 6e-27
pdb|1KQF|A Chain A, Formate Dehydrogenase N From E. Coli >g... 50 7e-07
pdb|1G8K|A Chain A, Crystal Structure Analysis Of Arsenite ... 40 8e-04
pdb|1G8J|C Chain C, Crystal Structure Analysis Of Arsenite ... 40 8e-04
pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) F... 37 0.007
pdb|1QHI|B Chain B, Herpes Simplex Virus Type-I Thymidine K... 27 6.7
>pdb|1DMS| Structure Of Dmso Reductase
Length = 781
Score = 610 bits (1574), Expect = e-175
Identities = 329/764 (43%), Positives = 449/764 (58%), Gaps = 28/764 (3%)
Query: 33 SIPHATHFGPFIAKVQNGVIKDIVPQKSDYNPTMMLKAMVDRVYSDSRVKYPCVRKSFLE 92
++ +H+G F A V+NG P + D +PT ML+ ++D +YS +R+KYP VR+ FLE
Sbjct: 7 TVMSGSHWGVFTATVENGRATAFTPWEKDPHPTPMLEGVLDSIYSPTRIKYPMVRREFLE 66
Query: 93 NKKN-HKELRGREEFVRVSWDVALDLAAKKLKEIPK----ENIYNASYGGWGHAGSLHRC 147
N + RG +FVRVSWD ALDL A ++K + + + ++ SYG W G LH C
Sbjct: 67 KGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPQGVFGGSYG-WKSPGRLHNC 125
Query: 148 HHLAWRFFNTTLGGAIGTDGEYSNGAAARINPMIVGDMEVYSQQTTHEEMIKNCKVYVMW 207
L R T GG + G+YS GAA I P +VG +EVY QQT + +N +V V W
Sbjct: 126 TTLLRRML-TLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTAWPVLAENTEVMVFW 184
Query: 208 GADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKFISIDPIYTETAQAFSAEWIPIRPNTDV 267
AD +K ++I + +P H K G K I IDP+ T+T + F A+ + +P TDV
Sbjct: 185 AADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEFFGADHVTPKPQTDV 244
Query: 268 ALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPKTLEWASQITGVSAEKI 327
A+MLGM H L + YDK FIA YT GFDKFLPYL+GE+D+ PKT EWAS I+GV AE I
Sbjct: 245 AIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLMGETDSTPKTAEWASDISGVPAETI 304
Query: 328 KELADLFVSKRTFLAGNWAMQRAQYGEQPDWALIVLASMIGQVGLSGGGFGFSMHYGGNA 387
KELA LF SKRT LA W+MQR +GEQ W L+ LASM+GQ+GL GGGFG S HY G
Sbjct: 305 KELARLFKSKRTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGLPGGGFGLSYHYSGGG 364
Query: 388 QASSGARIVPMISQGHNSVK----------SVIPASRVSEAILNPDKEIDFMGKKLKLPK 437
SS + I+ G + K SVIP +RV + + NP E DF G + K P
Sbjct: 365 TPSSSGPALSGITDGGAATKGPEWLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPD 424
Query: 438 IKMIYNCGADLLGHETDTNELIRALRTLDCVIVHEPWWTPTAKFADIVFASTSTVERDDI 497
+KM Y G + H D N +++A L+ IVH+ WTPTA+ ADIV +T++ ER+DI
Sbjct: 425 VKMAYWVGGNPFVHHQDRNRMVKAWEKLETFIVHDFQWTPTARHADIVLPATTSYERNDI 484
Query: 498 AFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQLALRIGGNETEQKFTESKSYMEWIKGL 557
G YS + AM+K+VEP+YE++ DY+IF +A R+G ++FTE K M WIK
Sbjct: 485 ETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKG---KEFTEGKDEMGWIKSF 541
Query: 558 YE------KSDGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPINNKLDTESGKI 611
Y+ K+ G + +FD FW +G VEF + + A FVR+A FR+DP+ N L T +G I
Sbjct: 542 YDDAAKQGKAGGVEMPAFDAFWAEGIVEFPVTDGA-DFVRYASFREDPLLNPLGTPTGLI 600
Query: 612 QIFSQKCADFKLADFKGHPTWFEPAEWLGSKMAEIYPFHLISPHPKYRVNSQLDNTWVRN 671
+I+S+ D HPTW EP E L A+ YP H+ + HP R++SQL+ T +R
Sbjct: 601 EIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAK-YPLHIAASHPFNRLHSQLNGTVLRE 659
Query: 672 VYKIQGREPVMINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQGVLSIQKGAWY 731
Y +QG EP +++ DA GI G++V V N RG++L G VT + +GV+ I +G WY
Sbjct: 660 GYAVQGHEPCLMHPDDAAARGIADGDVVRVHNDRGQILTGVKVTDAVMKGVIQIYEGGWY 719
Query: 732 DPEDERVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRR 775
DP D G VN L++ TS + Q T L + +
Sbjct: 720 DPSDVTEAGTLDKYGDVNVLSADIGTSKLAQGNCGQTVLAEVEK 763
>pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR| Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|3DMR| Structure Of Dmso Reductase From Rhodobacter Capsulatus At Ph 7.0
pdb|2DMR| Dithionite Reduced Dmso Reductase From Rhodobacter Capsulatus
pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
Length = 823
Score = 603 bits (1556), Expect = e-173
Identities = 336/791 (42%), Positives = 454/791 (56%), Gaps = 39/791 (4%)
Query: 6 RSILTKIPIALASANVLKAVGVFEKVESIPHATHFGPFIAKVQNGVIKDIVPQKSDYNPT 65
RS+L K A A AN ++ +H+G F A V+NG P + D +P+
Sbjct: 33 RSLLAKGARAEALAN-----------GTVMSGSHWGVFTATVENGRATAFTPWEKDPHPS 81
Query: 66 MMLKAMVDRVYSDSRVKYPCVRKSFLENKKN-HKELRGREEFVRVSWDVALDLAAKKLKE 124
ML ++D +YS +R+KYP VR+ FLE N + RG +FVRVSWD ALDL A ++K
Sbjct: 82 PMLAGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKR 141
Query: 125 IPK----ENIYNASYGGWGHAGSLHRCHHLAWRFFNTTLGGAIGTDGEYSNGAAARINPM 180
+ + E ++ SYG W G LH C L R T GG + G+YS GAA I P
Sbjct: 142 VEETYGPEGVFGGSYG-WKSPGRLHNCTTLLRRML-TLAGGYVNGAGDYSTGAAQVIMPH 199
Query: 181 IVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKF 240
+VG +EVY QQT + +N +V V W AD +K ++I + +P H K G K
Sbjct: 200 VVGTLEVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKV 259
Query: 241 ISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLP 300
I IDP+ T+T + F AE I +P TDVA+MLGM H L + YDK FIA YT GFDKFLP
Sbjct: 260 IVIDPVRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLP 319
Query: 301 YLLGESDNAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWAL 360
YL GE+D+ PKT EWA I+GV AE IKELA LF SKRT LA W+MQR +GEQ W L
Sbjct: 320 YLDGETDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQRMHHGEQAHWML 379
Query: 361 IVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQGHNSVK----------SVI 410
+ LASM+GQ+GL GGGFG S HY G S+ + I+ G + K SVI
Sbjct: 380 VTLASMLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVI 439
Query: 411 PASRVSEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHETDTNELIRALRTLDCVIV 470
P +RV + + NP E DF G + K P +KM Y G + H D N +++A L+ +V
Sbjct: 440 PVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVV 499
Query: 471 HEPWWTPTAKFADIVFASTSTVERDDIAFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQ 530
H+ WTPTA+ ADIV +T++ ER+DI G YS + AM+K+VEP+YE++ DY+IF
Sbjct: 500 HDFQWTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAA 559
Query: 531 LALRIGGNETEQKFTESKSYMEWIKGLYE------KSDGPTLKSFDQFWRDGFVEFEIPE 584
+A R+G +FTE K M WIK Y+ K+ G + +FD FW +G VEF + +
Sbjct: 560 VAERLGKG---AEFTEGKDEMGWIKSFYDDAAKQGKAAGVQMPAFDAFWAEGIVEFPVTD 616
Query: 585 NARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKLADFKGHPTWFEPAEWLGSKMA 644
A FVR+A FR+DP+ N L T +G I+I+S+ D HPTW EP E L A
Sbjct: 617 GA-DFVRYASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGA 675
Query: 645 EIYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNA 704
+ YP H+ + HP R++SQL+ T +R Y +QG EP +++ DA GI G++V V N
Sbjct: 676 K-YPLHIAASHPFNRLHSQLNGTVLREGYAVQGHEPCLMHPDDAAARGIADGDVVRVHND 734
Query: 705 RGRLLAGAFVTKNIRQGVLSIQKGAWYDPEDERVRNPRCNAGHVNTLTSLRPTSSMTQAI 764
RG++L G VT + +GV+ I +G WYDP D G VN L++ TS + Q
Sbjct: 735 RGQILTGVKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYGDVNVLSADIGTSKLAQGN 794
Query: 765 SANTALVNIRR 775
T L + +
Sbjct: 795 CGQTVLAEVEK 805
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer
Length = 823
Score = 603 bits (1556), Expect = e-173
Identities = 336/791 (42%), Positives = 454/791 (56%), Gaps = 39/791 (4%)
Query: 6 RSILTKIPIALASANVLKAVGVFEKVESIPHATHFGPFIAKVQNGVIKDIVPQKSDYNPT 65
RS+L K A A AN ++ +H+G F A V+NG P + D +P+
Sbjct: 33 RSLLAKGARAEALAN-----------GTVMSGSHWGVFTATVENGRATAFTPWEKDPHPS 81
Query: 66 MMLKAMVDRVYSDSRVKYPCVRKSFLENKKN-HKELRGREEFVRVSWDVALDLAAKKLKE 124
ML ++D +YS +R+KYP VR+ FLE N + RG +FVRVSWD ALDL A ++K
Sbjct: 82 PMLAGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKR 141
Query: 125 IPK----ENIYNASYGGWGHAGSLHRCHHLAWRFFNTTLGGAIGTDGEYSNGAAARINPM 180
+ + E ++ SYG W G LH C L R T GG + G+YS GAA I P
Sbjct: 142 VEETYGPEGVFGGSYG-WKSPGRLHNCTTLLRRML-TLAGGYVNGAGDYSTGAAQVIMPH 199
Query: 181 IVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKF 240
+VG +EVY QQT + +N +V V W AD +K ++I + +P H K G K
Sbjct: 200 VVGTLEVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKV 259
Query: 241 ISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLP 300
I IDP+ T+T + F AE I +P TDVA+MLGM H L + YDK FIA YT GFDKFLP
Sbjct: 260 IVIDPVRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLP 319
Query: 301 YLLGESDNAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWAL 360
YL GE+D+ PKT EWA I+GV AE IKELA LF SKRT LA W+MQR +GEQ W L
Sbjct: 320 YLDGETDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQRMHHGEQAHWML 379
Query: 361 IVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQGHNSVK----------SVI 410
+ LASM+GQ+GL GGGFG S HY G S+ + I+ G + K SVI
Sbjct: 380 VTLASMLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVI 439
Query: 411 PASRVSEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHETDTNELIRALRTLDCVIV 470
P +RV + + NP E DF G + K P +KM Y G + H D N +++A L+ +V
Sbjct: 440 PVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVV 499
Query: 471 HEPWWTPTAKFADIVFASTSTVERDDIAFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQ 530
H+ WTPTA+ ADIV +T++ ER+DI G YS + AM+K+VEP+YE++ DY+IF
Sbjct: 500 HDFQWTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAA 559
Query: 531 LALRIGGNETEQKFTESKSYMEWIKGLYE------KSDGPTLKSFDQFWRDGFVEFEIPE 584
+A R+G +FTE K M WIK Y+ K+ G + +FD FW +G VEF + +
Sbjct: 560 VAERLGKG---AEFTEGKDEMGWIKSFYDDAAKQGKAAGVEMPAFDAFWAEGIVEFPVTD 616
Query: 585 NARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKLADFKGHPTWFEPAEWLGSKMA 644
A FVR+A FR+DP+ N L T +G I+I+S+ D HPTW EP E L A
Sbjct: 617 GA-DFVRYASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGA 675
Query: 645 EIYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNA 704
+ YP H+ + HP R++SQL+ T +R Y +QG EP +++ DA GI G++V V N
Sbjct: 676 K-YPLHIAASHPFNRLHSQLNGTVLREGYAVQGHEPCLMHPDDAAARGIADGDVVRVHND 734
Query: 705 RGRLLAGAFVTKNIRQGVLSIQKGAWYDPEDERVRNPRCNAGHVNTLTSLRPTSSMTQAI 764
RG++L G VT + +GV+ I +G WYDP D G VN L++ TS + Q
Sbjct: 735 RGQILTGVKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYGDVNVLSADIGTSKLAQGN 794
Query: 765 SANTALVNIRR 775
T L + +
Sbjct: 795 CGQTVLAEVEK 805
>pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 603 bits (1555), Expect = e-173
Identities = 335/791 (42%), Positives = 455/791 (57%), Gaps = 39/791 (4%)
Query: 6 RSILTKIPIALASANVLKAVGVFEKVESIPHATHFGPFIAKVQNGVIKDIVPQKSDYNPT 65
RS+L K A A AN ++ +H+G F A V+NG P + D +P+
Sbjct: 33 RSLLAKGARAEALAN-----------GTVMSGSHWGVFTATVENGRATAFTPWEKDPHPS 81
Query: 66 MMLKAMVDRVYSDSRVKYPCVRKSFLENKKN-HKELRGREEFVRVSWDVALDLAAKKLKE 124
ML ++D +YS +R+KYP VR+ FLE N + RG +FVRVSWD ALDL A ++K
Sbjct: 82 PMLAGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKR 141
Query: 125 IPK----ENIYNASYGGWGHAGSLHRCHHLAWRFFNTTLGGAIGTDGEYSNGAAARINPM 180
+ + + ++ SYG W G LH C L R T GG + G+YS GAA I P
Sbjct: 142 VEETYGPQGVFGGSYG-WKSPGRLHNCTTLLRRML-TLAGGYVNGAGDYSTGAAQVIMPH 199
Query: 181 IVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKF 240
+VG +EVY QQT + +N +V V W AD +K ++I + +P H K G K
Sbjct: 200 VVGTLEVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKV 259
Query: 241 ISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLP 300
I IDP+ T+T + F AE I +P TDVA+MLGM H L + YDK FIA YT GFDKFLP
Sbjct: 260 IVIDPVRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLP 319
Query: 301 YLLGESDNAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWAL 360
YL GE+D+ PKT EWA I+GV AE IKELA LF SKRT LA W+MQR +GEQ W L
Sbjct: 320 YLDGETDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQRMHHGEQAHWML 379
Query: 361 IVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQGHNSVK----------SVI 410
+ LASM+GQ+GL GGGFG S HY G S+ + I+ G + K SVI
Sbjct: 380 VTLASMLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVI 439
Query: 411 PASRVSEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHETDTNELIRALRTLDCVIV 470
P +RV + + NP E DF G + K P +KM Y G + H D N +++A L+ +V
Sbjct: 440 PVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVV 499
Query: 471 HEPWWTPTAKFADIVFASTSTVERDDIAFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQ 530
H+ WTPTA+ ADIV +T++ ER+DI G YS + AM+K+VEP+YE++ DY+IF
Sbjct: 500 HDFQWTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAA 559
Query: 531 LALRIGGNETEQKFTESKSYMEWIKGLYE------KSDGPTLKSFDQFWRDGFVEFEIPE 584
+A R+G ++FTE K M WIK Y+ K+ G + +FD FW +G VEF + +
Sbjct: 560 VAERLGKG---KEFTEGKDEMGWIKSFYDDAAKQGKAAGVEMPAFDAFWAEGIVEFPVTD 616
Query: 585 NARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKLADFKGHPTWFEPAEWLGSKMA 644
A FVR+A FR+DP+ N L T +G I+I+S+ D HPTW EP E L A
Sbjct: 617 GA-DFVRYASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGA 675
Query: 645 EIYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNA 704
+ YP H+ + HP R++SQL+ T +R Y +QG EP +++ DA GI G++V V N
Sbjct: 676 K-YPLHIAASHPFNRLHSQLNGTVLREGYAVQGHEPCLMHPDDAAARGIADGDVVRVHND 734
Query: 705 RGRLLAGAFVTKNIRQGVLSIQKGAWYDPEDERVRNPRCNAGHVNTLTSLRPTSSMTQAI 764
RG++L G VT + +GV+ I +G WYDP D G VN L++ TS + Q
Sbjct: 735 RGQILTGVKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYGDVNVLSADIGTSKLAQGN 794
Query: 765 SANTALVNIRR 775
T L + +
Sbjct: 795 CGQTVLAEVEK 805
>pdb|4DMR| Reduced Dmso Reductase From Rhodobacter Capsulatus With Bound Dmso
Substrate
Length = 823
Score = 602 bits (1551), Expect = e-173
Identities = 335/791 (42%), Positives = 453/791 (56%), Gaps = 39/791 (4%)
Query: 6 RSILTKIPIALASANVLKAVGVFEKVESIPHATHFGPFIAKVQNGVIKDIVPQKSDYNPT 65
RS+L K A A AN ++ +H+G F A V+NG P + D +P+
Sbjct: 33 RSLLAKGARAEALAN-----------GTVMSGSHWGVFTATVENGRATAFTPWEKDPHPS 81
Query: 66 MMLKAMVDRVYSDSRVKYPCVRKSFLENKKN-HKELRGREEFVRVSWDVALDLAAKKLKE 124
ML ++D +YS +R+KYP VR+ FLE N + RG +FVRVSWD ALDL A ++K
Sbjct: 82 PMLAGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKR 141
Query: 125 IPK----ENIYNASYGGWGHAGSLHRCHHLAWRFFNTTLGGAIGTDGEYSNGAAARINPM 180
+ + ++ SYG W G LH C L R T GG + G+YS GAA I P
Sbjct: 142 VEETYGPSGVFGGSYG-WKSPGRLHNCTTLLRRML-TLAGGYVNGAGDYSTGAAQVIMPH 199
Query: 181 IVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKF 240
+VG +EVY QQT + +N +V V W AD +K ++I + +P H K G K
Sbjct: 200 VVGTLEVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKV 259
Query: 241 ISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLP 300
I IDP+ T+T + F AE I +P TDVA+MLGM H L + YDK FIA YT GFDKFLP
Sbjct: 260 IVIDPVRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLP 319
Query: 301 YLLGESDNAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWAL 360
YL GE+D+ PKT EWA I+GV AE IKELA LF SKRT LA W+MQR +GEQ W L
Sbjct: 320 YLDGETDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQRMHHGEQAHWML 379
Query: 361 IVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQGHNSVK----------SVI 410
+ LASM+GQ+GL GGGFG S HY G S+ + I+ G + K SVI
Sbjct: 380 VTLASMLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVI 439
Query: 411 PASRVSEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHETDTNELIRALRTLDCVIV 470
P +RV + + NP E DF G + K P +KM Y G + H D N +++A L+ +V
Sbjct: 440 PVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVV 499
Query: 471 HEPWWTPTAKFADIVFASTSTVERDDIAFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQ 530
H+ WTPTA+ ADIV +T++ ER+DI G YS + AM+K+VEP+YE++ DY+IF
Sbjct: 500 HDFQWTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAA 559
Query: 531 LALRIGGNETEQKFTESKSYMEWIKGLYE------KSDGPTLKSFDQFWRDGFVEFEIPE 584
+A R+G +FTE K M WIK Y+ K+ G + +FD FW +G VEF + +
Sbjct: 560 VAERLGKG---AEFTEGKDEMGWIKSFYDDAAKQGKAAGVQMPAFDAFWAEGIVEFPVTD 616
Query: 585 NARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKLADFKGHPTWFEPAEWLGSKMA 644
A FVR+A FR+DP+ N L T +G I+I+S+ D HPTW EP E L A
Sbjct: 617 GA-DFVRYASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGA 675
Query: 645 EIYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNA 704
+ YP H+ + HP R++SQL+ T +R Y +QG EP +++ DA GI G++V V N
Sbjct: 676 K-YPLHIAASHPFNRLHSQLNGTVLREGYAVQGHEPCLMHPDDAAARGIADGDVVRVHND 734
Query: 705 RGRLLAGAFVTKNIRQGVLSIQKGAWYDPEDERVRNPRCNAGHVNTLTSLRPTSSMTQAI 764
RG++L G VT + +GV+ I +G WYDP D G VN L++ TS + Q
Sbjct: 735 RGQILTGVKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYGDVNVLSADIGTSKLAQGN 794
Query: 765 SANTALVNIRR 775
T L + +
Sbjct: 795 CGQTVLAEVEK 805
>pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaeroides
Dimethylsulfoxide Reductase Reveals Two Distinct
Molybdenum Coordination Environments
Length = 780
Score = 578 bits (1489), Expect = e-165
Identities = 313/757 (41%), Positives = 433/757 (56%), Gaps = 26/757 (3%)
Query: 39 HFGPFIAKVQNGVIKDIVPQKSDYNPTMMLKAMVDRVYSDSRVKYPCVRKSFLENKKN-H 97
H+G F A+V+NG P D P+ L ++D +YS +R+KYP VR+ FLE N
Sbjct: 13 HWGVFKARVENGRAVAFEPWDKDPAPSHQLPGVLDSIYSPTRIKYPMVRREFLEKGVNAD 72
Query: 98 KELRGREEFVRVSWDVALDLAAKKLKEIPKENIYNASYGG---WGHAGSLHRCHHLAWRF 154
+ RG +FVRV+WD ALDL A++LK + + ++GG W G LH C L R
Sbjct: 73 RSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNCQVLMRRA 132
Query: 155 FNTTLGGAIGTDGEYSNGAAARINPMIVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKC 214
N GG + + G+YS AA I P ++G +EVY QQT +++N + V W AD +K
Sbjct: 133 LNLA-GGFVNSSGDYSTAAAQIIMPHVMGTLEVYEQQTAWPVVVENTDLMVFWAADPMKT 191
Query: 215 NRIDYFVPNHVNDSYYPKYKRAGIKFISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMM 274
N I + +P+H + K G + I I+P+ TETA F A+ + RP TDVALMLGM
Sbjct: 192 NEIGWVIPDHGAYAGMKALKEKGTRVIXINPVRTETADYFGADVVSPRPQTDVALMLGMA 251
Query: 275 HYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPKTLEWASQITGVSAEKIKELADLF 334
H LY+ + +DK F+ T GFD F YL GESD PKT EWA++I G+ AE+I+ELA F
Sbjct: 252 HTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKTAEWAAEICGLPAEQIRELARSF 311
Query: 335 VSKRTFLAGNWAMQRAQYGEQPDWALIVLASMIGQVGLSGGGFGFSMHYGGNAQASSGAR 394
V+ RT LA W++QR +GEQ W L+ LASMIGQ+GL GGGFG S HY +S
Sbjct: 312 VAGRTMLAAGWSIQRMHHGEQAHWMLVTLASMIGQIGLPGGGFGLSYHYSNGGSPTSDGP 371
Query: 395 IVPMISQGHNSVKSV----------IPASRVSEAILNPDKEIDFMGKKLKLPKIKMIYNC 444
+ IS G +V+ IP +RV + +LNP E F G P +K+ Y
Sbjct: 372 ALGGISDGGKAVEGAAWLSESGATSIPCARVVDMLLNPGGEFQFNGATATYPDVKLAYWA 431
Query: 445 GADLLGHETDTNELIRALRTLDCVIVHEPWWTPTAKFADIVFASTSTVERDDIAFGGSYS 504
G + H D N +++A L+ IV + WT TA+ ADIV +T++ ER+DI G YS
Sbjct: 432 GGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARHADIVLPATTSYERNDIESVGDYS 491
Query: 505 KNVVYAMRKVVEPVYESKDDYEIFRQLALRIGGNETEQKFTESKSYMEWIKGLYEKS--- 561
+ AM+KVV+P+YE++ DY+IF LA R+G +FTE + M WI YE +
Sbjct: 492 NRAILAMKKVVDPLYEARSDYDIFAALAERLGKG---AEFTEGRDEMGWISSFYEAAVKQ 548
Query: 562 ---DGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPINNKLDTESGKIQIFSQKC 618
+ SF+ FW +G VEF I E A FVR+A FR+DP+ N L T SG I+I+S+
Sbjct: 549 AEFKNVAMPSFEDFWSEGIVEFPITEGA-NFVRYADFREDPLFNPLGTPSGLIEIYSKNI 607
Query: 619 ADFKLADFKGHPTWFEPAEWLGSKMAEIYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGR 678
D HPTW EPAE LG A+ YP H+++ HPK R++SQL+ T +R++Y + G
Sbjct: 608 EKMGYDDCPAHPTWMEPAERLGGAGAK-YPLHVVASHPKSRLHSQLNGTSLRDLYAVAGH 666
Query: 679 EPVMINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQGVLSIQKGAWYDPEDERV 738
EP +IN DA GI G+++ VFN RG++L GA V+ + G + I +G WYDP D
Sbjct: 667 EPCLINPADAAARGIADGDVLRVFNDRGQILVGAKVSDAVMPGAIQIYEGGWYDPLDPSE 726
Query: 739 RNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRR 775
G VN L+ TS + Q T L ++ +
Sbjct: 727 EGTLDKYGDVNVLSLDVGTSKLAQGNCGQTILADVEK 763
>pdb|1TMO| Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 484 bits (1247), Expect = e-137
Identities = 298/795 (37%), Positives = 418/795 (52%), Gaps = 43/795 (5%)
Query: 16 LASANVLKAVGVFEKVESIPHATHFGPFIAKVQNGVIKDIVPQKSDYNPTMMLKAMVDRV 75
L N L G+ E E + +HFG F K +NGVI ++ P D PT M+ + V
Sbjct: 24 LTPLNALAKAGINED-EWLTTGSHFGAFKMKRKNGVIAEVKPFDLDKYPTDMINGIRGMV 82
Query: 76 YSDSRVKYPCVRKSFL-ENKKNHKELRGREEFVRVSWDVALDLAAKKLKEIPKE---NIY 131
Y+ SRV+YP VR FL + K++ RG FVRV+WD AL L L E+ + +
Sbjct: 83 YNPSRVRYPMVRLDFLLKGHKSNTHQRGDFRFVRVTWDKALTLFKHSLDEVQTQYGPSGL 142
Query: 132 NASYGGWGHAGSLHRCHHLAWRFFNTTLGGAIGTDGEYSNGAAARINPMIVGDMEVYSQQ 191
+A GW G LH R G + G+YS GA I P ++G EVY+Q
Sbjct: 143 HAGQTGWRATGQLHSSTSHMQRAVGMH-GNYVKKIGDYSTGAGQTILPYVLGSTEVYAQG 201
Query: 192 TTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYP----KYKRAGIKFISIDPIY 247
T+ ++++ V+W D K ++ + H + +Y K K+ I+ ISIDP+
Sbjct: 202 TSWPLILEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVV 261
Query: 248 TETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESD 307
T+T E + + P TDV LML + H + + YD FI Y+ GF++F+PY++G D
Sbjct: 262 TKTQAYLGCEQLYVNPQTDVTLMLAIAHEMISKKLYDDKFIQGYSLGFEEFVPYVMGTKD 321
Query: 308 NAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWALIVLASMI 367
KT EWA+ I GV A I++LA V RT W +QR Q+GEQP W VLA+MI
Sbjct: 322 GVAKTPEWAAPICGVEAHVIRDLAKTLVKGRTQFMMGWCIQRQQHGEQPYWMAAVLATMI 381
Query: 368 GQVGLSGGGFGFSMHYGGNAQASSGARI------------VPMI-SQGHNSVKSVIPASR 414
GQ+GL GGG + HY SSGA P+ S S IP +R
Sbjct: 382 GQIGLPGGGISYGHHYSSIGVPSSGAAAPGAFPRNLDENQKPLFDSSDFKGASSTIPVAR 441
Query: 415 VSEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHETDTNELIRALRTLDCVIVHEPW 474
+AIL P K ID G K+ P IKM+ G + H D N + +A L+CV+ +
Sbjct: 442 WIDAILEPGKTIDANGSKVVYPDIKMMIFSGNNPWNHHQDRNRMKQAFHKLECVVTVDVN 501
Query: 475 WTPTAKFADIVFASTSTVERDDIAFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQLALR 534
WT T +F+DIV + +T ER+DI G+Y+ + AM+K+VEP+++S D+EIF + A
Sbjct: 502 WTATCRFSDIVLPACTTYERNDIDVYGAYANRGILAMQKMVEPLFDSLSDFEIFTRFAAV 561
Query: 535 IGGNETEQKFTESKSYMEWIKGLYEKSDGPTLKSFDQ-----FWRDGFVEFEIPENARKF 589
+G E+++T + MEW++ LY + F+ FW+ G+V F + +
Sbjct: 562 LG---KEKEYTRNMGEMEWLETLYNECKAANAGKFEMPDFATFWKQGYVHF---GDGEVW 615
Query: 590 VRHAKFRQDPINNKLDTESGKIQIFSQKCADFKLADFKGHPTWFEPAEWL-GSKMAEIYP 648
RHA FR DP N L T SG I+IFS+K F D KGHPTW E E G ++ +P
Sbjct: 616 TRHADFRNDPEINPLGTPSGLIEIFSRKIDQFGYDDCKGHPTWMEKTERSHGGPGSDKHP 675
Query: 649 FHLISPHPKYRVNSQL-DNTWVRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNARGR 707
L S HP R++SQ+ ++ R Y + GREPV I+ +DA GI+ G+IV VFN RG+
Sbjct: 676 IWLQSCHPDKRLHSQMCESREYRETYAVNGREPVYISPVDAKARGIKDGDIVRVFNDRGQ 735
Query: 708 LLAGAFVTKNIRQGVLSIQKGAWYDP-------EDERVRNPRCNAGHVNTLTSLRPTSSM 760
LLAGA V+ N +G++ I +GAWY P E C+ G NTLT TS +
Sbjct: 736 LLAGAVVSDNFPKGIVRIHEGAWYGPVGKDGSTEGGAEVGALCSYGDPNTLTLDIGTSKL 795
Query: 761 TQAISANTALVNIRR 775
QA SA T LV +
Sbjct: 796 AQACSAYTCLVEFEK 810
>pdb|1FDO| Oxidized Form Of Formate Dehydrogenase H From E. Coli
pdb|1FDI| Oxidized Form Of Formate Dehydrogenase H From E. Coli Complexed
With The Inhibitor Nitrite
pdb|1AA6| Reduced Form Of Formate Dehydrogenase H From E. Coli
Length = 715
Score = 117 bits (292), Expect = 6e-27
Identities = 148/647 (22%), Positives = 266/647 (40%), Gaps = 76/647 (11%)
Query: 109 VSWDVALDLAAKKLKEIPKENIYNASYGGWGHAGSLHRCHHLAWRFFNTTLG-GAIGTDG 167
VSWD AL+ A++L I ++ +A G+ + +++ +F +G +
Sbjct: 78 VSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCA 137
Query: 168 EYSNGAAARINPMIVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVND 227
+G + VG+ + I N + ++G + + I V NHV +
Sbjct: 138 RVXHGPSVAGLHQSVGN----GAMSNAINEIDNTDLVFVFGYNPADSHPI---VANHVIN 190
Query: 228 SYYPKYKRAGIKFISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAF 287
+ KR G K I DP ETA+ I ++ +++AL+ M H + N YDKAF
Sbjct: 191 A-----KRNGAKIIVCDPRKIETARIADMH-IALKNGSNIALLNAMGHVIIEENLYDKAF 244
Query: 288 IAKYTDGFDKFLPYLLGESDNAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAM 347
+A T+GF+++ + G + P+++E ITGVSA +I++ A ++ ++ A W M
Sbjct: 245 VASRTEGFEEYRKIVEGYT---PESVE---DITGVSASEIRQAARMYAQAKS-AAILWGM 297
Query: 348 QRAQY--GEQPDWALIVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQGHNS 405
Q+ G + +L LA + G +G G + N Q + +P G+
Sbjct: 298 GVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVN-PVRGQNNVQGACDMGALPDTYPGYQY 356
Query: 406 VKSVIPASR--------VSEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHETDTNE 457
VK PA+R V + I + + +++ Y G D L + + +
Sbjct: 357 VKD--PANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSA 414
Query: 458 LIRALRTLDCVIVHEPWWTPTAKFADIVFASTSTVERDDIAFGGSYSKNVVYAMRKVVEP 517
+ +A L+ VIV + + T TA AD++ STS E + + + K VEP
Sbjct: 415 VRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFF---KAVEP 471
Query: 518 VYESKDDYEIFRQLALRIGGNETEQKFTESKSYMEWIKGLYEKSDGPTLKSFDQFWRDGF 577
++ K D++I ++A R+G + ++ + ++ L G T + + GF
Sbjct: 472 KWDLKTDWQIISEIATRMG---YPMHYNNTQEIWDELRHLCPDFYGATYEKMGEL---GF 525
Query: 578 VEFEIPENARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKLADFKGHPTWFEPAE 637
+++ P + D + G +F +K D F +
Sbjct: 526 IQW------------------PCRDTSDADQGTSYLFKEK------FDTPNGLAQFFTCD 561
Query: 638 WLG--SKMAEIYPFHL--ISPHPKYRVNSQLDNTWVRNVYKIQGREP--VMINELDANKL 691
W+ K+ + YP L + Y S N EP IN DA +L
Sbjct: 562 WVAPIDKLTDEYPMVLSTVREVGHYSCRSMTGNC---AALAALADEPGYAQINTEDAKRL 618
Query: 692 GIRHGEIVEVFNARGRLLAGAFVTKNIRQGVLSIQKGAWYDPEDERV 738
GI +V V + +G+++ A V+ +G + + W +E V
Sbjct: 619 GIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGACNELV 665
>pdb|1KQF|A Chain A, Formate Dehydrogenase N From E. Coli
pdb|1KQG|A Chain A, Formate Dehydrogenase N From E. Coli
Length = 1015
Score = 50.4 bits (119), Expect = 7e-07
Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 45/239 (18%)
Query: 71 MVDRVYSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAKKLKEIPKENI 130
++D V S++R++YP R G +++ R+SW+ A AK +K N
Sbjct: 98 LLDYVNSENRLRYPEYRAP------------GSDKWQRISWEEAFSRIAKLMKADRDANF 145
Query: 131 YNASYGG-----WGHAGSL------HRCHHLAWRFFNTTLGGAIGTDGEYSNGAAARINP 179
+ G W G L + L +F + G + D N A P
Sbjct: 146 IEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSL--GMLAVD----NQARVXHGP 199
Query: 180 MIVGDMEVYSQ--QTTHEEMIKNCKVYVMWGADLLKCNRIDY---FVPNHVNDSYYPKYK 234
+ + + T H IKN V ++ G + + + + + + ND+
Sbjct: 200 TVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDA------ 253
Query: 235 RAGIKFISIDPIYTETAQAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTD 293
I +DP +T TA + PIR TD+ + G++ YL +N+ + ++ YT+
Sbjct: 254 ----TLIVVDPRFTRTASVADI-YAPIRSGTDITFLSGVLRYLIENNKINAEYVKHYTN 307
>pdb|1G8K|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|E Chain E, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|G Chain G, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 40.4 bits (93), Expect = 8e-04
Identities = 27/78 (34%), Positives = 36/78 (45%), Gaps = 15/78 (19%)
Query: 259 IPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPKT----LE 314
+ I P TD AL G+ Y+ DK FI +T GF D+A KT L+
Sbjct: 299 LAIEPGTDTALFNGLFTYVVEQGWIDKPFIEAHTKGF-----------DDAVKTNRLSLD 347
Query: 315 WASQITGVSAEKIKELAD 332
S ITGV + +K A+
Sbjct: 348 ECSNITGVPVDMLKRAAE 365
Score = 33.1 bits (74), Expect = 0.12
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 621 FKLADFKGHPTWFEPAEWLGSKMAEIYPFHLISPHPKYRV------NSQLDNTWVRNVYK 674
F D K H F+PA W G P + KYR N+++ T + Y
Sbjct: 666 FDTDDGKAH---FKPAPWNG------LPATVQQQKDKYRFWLNNGRNNEVWQTAYHDQYN 716
Query: 675 --IQGREPVMINEL---DANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQG 721
+Q R P+ E+ D +L + G+IVEV+N G A + I++G
Sbjct: 717 SLMQERYPMAYIEMNPDDCKQLDVTGGDIVEVYNDFGSTFAMVYPVAEIKRG 768
>pdb|1G8J|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8J|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 40.4 bits (93), Expect = 8e-04
Identities = 27/78 (34%), Positives = 36/78 (45%), Gaps = 15/78 (19%)
Query: 259 IPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPKT----LE 314
+ I P TD AL G+ Y+ DK FI +T GF D+A KT L+
Sbjct: 299 LAIEPGTDTALFNGLFTYVVEQGWIDKPFIEAHTKGF-----------DDAVKTNRLSLD 347
Query: 315 WASQITGVSAEKIKELAD 332
S ITGV + +K A+
Sbjct: 348 ECSNITGVPVDMLKRAAE 365
Score = 33.1 bits (74), Expect = 0.12
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 621 FKLADFKGHPTWFEPAEWLGSKMAEIYPFHLISPHPKYRV------NSQLDNTWVRNVYK 674
F D K H F+PA W G P + KYR N+++ T + Y
Sbjct: 666 FDTDDGKAH---FKPAPWNG------LPATVQQQKDKYRFWLNNGRNNEVWQTAYHDQYN 716
Query: 675 --IQGREPVMINEL---DANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQG 721
+Q R P+ E+ D +L + G+IVEV+N G A + I++G
Sbjct: 717 SLMQERYPMAYIEMNPDDCKQLDVTGGDIVEVYNDFGSTFAMVYPVAEIKRG 768
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
Length = 723
Score = 37.4 bits (85), Expect = 0.007
Identities = 149/706 (21%), Positives = 255/706 (36%), Gaps = 115/706 (16%)
Query: 85 CVRKSFLENKKNHKELRGREEFVR---------VSWDVALDLAAKKLKEIPKENIYNASY 135
C++ S L N KE R + VR VSWD ALDL A + + ++Y +
Sbjct: 47 CLKGSLLIPVLNSKE-RVTQPLVRRHKGGKLEPVSWDEALDLMASRFRS--SIDMYGPNS 103
Query: 136 GGWGHAGS-LHRCHHLAWRFFNTTLGGAIGTDGEYSNGAAARINPM--IVGDMEVYSQQT 192
W +G L ++A + F G GT+ N + + V
Sbjct: 104 VAWYGSGQCLTEESYVANKIFK----GGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMG 159
Query: 193 THEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKFISIDPIYTETAQ 252
T+ + I + + G++ + + + + K G+K I DP T T++
Sbjct: 160 TYAD-IDQATCFFIIGSNTSEAHPVLF------RRIARRKQVEPGVKIIVADPRRTNTSR 212
Query: 253 AFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDK------FLPYLLGES 306
+ RP TD+A M M + + F +Y + D F Y
Sbjct: 213 IADMH-VAFRPGTDLAFMHSMAWVIINEELDNPRFWQRYVNFMDAEGKPSDFEGYKAFLE 271
Query: 307 DNAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAM---QRAQYGEQPDWALIVL 363
+ P E ++I V E+I A F ++ W M QR Q G + + L
Sbjct: 272 NYRP---EKVAEICRVPVEQIYGAARAFAESAATMS-LWCMGINQRVQ-GVFANNLIHNL 326
Query: 364 ASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQGHNSVKSV-------------- 409
+ GQ+ G FS+ G A G R +S + +++
Sbjct: 327 HLITGQI-CRPGATSFSLT--GQPNACGGVRDGGALSHLLPAGRAIPNAKHRAEMEKLWG 383
Query: 410 IPASRVSEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHETDTNELIRALRTLDCVI 469
+P R++ P + + L +K + C + + N++ +A+ + I
Sbjct: 384 LPEGRIAP---EPGYHTVALFEALGRGDVKCMIICETNPAHTLPNLNKVHKAMSHPESFI 440
Query: 470 VHEPWWTP--TAKFADIVFASTSTVERDDIAFGGSYSKNVVYAMRKVVEPVYESKDDYEI 527
V + T ++AD+V ERD + G ++ K V+P + +
Sbjct: 441 VCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRYSLT---EKAVDPPGQCRPTVNT 497
Query: 528 FRQLALRIGGNETEQKFTESKS-YMEW---IKGLYEKSDGPTLKSFDQFWRDGFV----E 579
+ A R G + F ++ + EW KG G T + + G +
Sbjct: 498 LVEFARRAGVDPQLVNFRNAEDVWNEWRMVSKGTTYDFWGMTRERLRK--ESGLIWPCPS 555
Query: 580 FEIPENARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKLAD---FKGHPT----- 631
+ P + ++VR QDP C D F G P
Sbjct: 556 EDHPGTSLRYVRG----QDP------------------CVPADHPDRFFFYGKPDGRAVI 593
Query: 632 WFEPAEWLGSKMAEIYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVM---INELDA 688
W PA+ + YP +L S ++ T V ++Q P+ INE DA
Sbjct: 594 WMRPAKGAAEEPDAEYPLYLTSMRV---IDHWHTATMTGKVPELQKANPIAFVEINEEDA 650
Query: 689 NKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQGVLSIQKGAWYDPE 734
+ GI+HG+ V V R + A V+ R G++++ ++DP+
Sbjct: 651 ARTGIKHGDSVIVETRRDAMELPARVSDVCRPGLIAV---PFFDPK 693
>pdb|1QHI|B Chain B, Herpes Simplex Virus Type-I Thymidine Kinase Complexed
With A Novel Non-Substrate Inhibitor,
9-(4-Hydroxybutyl)-N2- Phenylguanine
pdb|1QHI|A Chain A, Herpes Simplex Virus Type-I Thymidine Kinase Complexed
With A Novel Non-Substrate Inhibitor,
9-(4-Hydroxybutyl)-N2- Phenylguanine
Length = 366
Score = 27.3 bits (59), Expect = 6.7
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 400 SQGHNSVKSVIPASRVSEAI-LNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHETDTNEL 458
S+GHN+ ++ + R EA + P++ K+P + +Y G +G T T L
Sbjct: 9 SRGHNNRRTALRPRRQQEATEVRPEQ---------KMPTLLRVYIDGPHGMGKTTTTQLL 59
Query: 459 IRALRTLDCVIVHEP 473
+ D V V EP
Sbjct: 60 VALGSRDDIVYVPEP 74
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,789,260
Number of Sequences: 13198
Number of extensions: 205942
Number of successful extensions: 514
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 17
length of query: 796
length of database: 2,899,336
effective HSP length: 96
effective length of query: 700
effective length of database: 1,632,328
effective search space: 1142629600
effective search space used: 1142629600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)