BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645036|ref|NP_207206.1| hypothetical protein
[Helicobacter pylori 26695]
         (162 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1A8H|    Methionyl-Trna Synthetase From Thermus Thermoph...    25  3.3

>pdb|1A8H|   Methionyl-Trna Synthetase From Thermus Thermophilus
          Length = 500

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)

Query: 120 KGGNYRYELEKLERW---FVQKAPEL--AESYR 147
           K GNY + +EK   W   ++Q+ P+L   E YR
Sbjct: 155 KEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYR 187



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.321    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 849,500
Number of Sequences: 13198
Number of extensions: 30844
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 1
length of query: 162
length of database: 2,899,336
effective HSP length: 81
effective length of query: 81
effective length of database: 1,830,298
effective search space: 148254138
effective search space used: 148254138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)