BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645037|ref|NP_207207.1| GMP synthase (guaA)
[Helicobacter pylori 26695]
(508 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complex... 491 e-139
pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric... 59 1e-09
pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescen... 56 1e-08
pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate S... 54 5e-08
pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small S... 48 2e-06
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Esc... 48 2e-06
pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphat... 44 3e-05
pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught ... 44 4e-05
pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphat... 44 4e-05
pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol... 31 0.37
pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amid... 30 0.64
pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneli... 30 0.64
pdb|1M6N|A Chain A, Crystal Structure Of The Seca Transloca... 28 1.9
pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Tr... 27 5.4
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 27 7.1
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Gluta... 27 7.1
pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coor... 26 9.2
pdb|1G71|A Chain A, Crystal Structure Of Pyrococcus Furiosu... 26 9.2
pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Cros... 26 9.2
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 491 bits (1263), Expect = e-139
Identities = 264/519 (50%), Positives = 349/519 (66%), Gaps = 15/519 (2%)
Query: 2 ILVLDFGSQYTQLIARRLRERGIYTEIVPFFESIENIQKKAPKGLILSGGPASVYAKDAY 61
IL+LDFGSQYTQL+ARR+RE G+Y E+ + + I+ P G+ILSGGP S +++
Sbjct: 10 ILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSP 69
Query: 62 KPSGKIFDLNVPILGICYGMQYLVDFFGGVVVGANEQEFGKAVLEITQNSVIFEGVKI-- 119
+ +F+ VP+ G+CYGMQ + GG V +NE+EFG A +E+ +S + G++
Sbjct: 70 RAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDAL 129
Query: 120 ----KSL--VWMSHMDKVIELPKGFTTLAKSPNSPHC--AIENGKIFGLQFHPEVVQSEE 171
K L VWMSH DKV +P F T+A + + P A E + +G+QFHPEV + +
Sbjct: 130 TADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQ 189
Query: 172 GGKILENFALLVCGCEKTWGMQHFAQREIARLKEKIANAKVLCAVSGGVDSTVVATLLHR 231
G ++LE F +C CE W +AR++E++ + KV+ +SGGVDS+V A LLHR
Sbjct: 190 GMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHR 249
Query: 232 AIKDNLIAVFVDHGLLRKNEKERVQAMFKD-LKIPLNTIDAKEVFLSKLKGVSEPELKRK 290
AI NL VFVD+GLLR NE E+V MF D + + + A++ FLS L G ++PE KRK
Sbjct: 250 AIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRK 309
Query: 291 IIGETFIEVFEKEAKKHHLKGKIEFLAQGTLYPDVIESV-SVKGPSKVIKTHHNVGGLPE 349
IIG F+EVF++EA K +++LAQGT+YPDVIES S G + VIK+HHNVGGLP+
Sbjct: 310 IIGRVFVEVFDEEALKLE---DVKWLAQGTIYPDVIESAASATGKAHVIKSHHNVGGLPK 366
Query: 350 WMDFKLIEPLRELFKDEVRLLGKELGVSQDFLMRHPFPGPGLAVRILGEISESKIKRLQE 409
M L+EPL+ELFKDEVR +G ELG+ D L RHPFPGPGL VR+LGE+ + L+
Sbjct: 367 EMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRR 426
Query: 410 ADFIFIEELKKANLYDKVWQAFCVLLNVNSVGVMGDNRTYENAICLRAVNASDGMTASFS 469
AD IFIEEL+KA+LYDKV QAF V L V SVGVMGD R Y+ + LRAV D MTA ++
Sbjct: 427 ADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWA 486
Query: 470 FLEHSFLEKVSNRITNEVSGINRVVYDITSKPPGTIEWE 508
L + FL +VSNRI NEV+GI+RVVYDI+ KPP TIEWE
Sbjct: 487 HLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE 525
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 59.3 bits (142), Expect = 1e-09
Identities = 56/187 (29%), Positives = 83/187 (43%), Gaps = 17/187 (9%)
Query: 2 ILVLDFGSQYTQLIARRLRERG----IYTEIVPFFESIENIQKKAPKGLILSGGP----- 52
IL+LD +T +A +LR G IY +P I+ + L+LS GP
Sbjct: 3 ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE 62
Query: 53 ASVYAKDAYKPSGKIFDLNVPILGICYGMQYLVDFFGGVVVGANEQEFGKAVLEITQNSV 112
A + + GK+ PI+GIC G Q +V+ +GG V A E GKA
Sbjct: 63 AGCMPELLTRLRGKL-----PIIGICLGHQAIVEAYGGYVGQAGEILHGKATSIEHDGQA 117
Query: 113 IFEGVKIKSLVWMSHMDKVIELPKGFTTLAKSPNSPHCAIEN--GKIFGLQFHPEVVQSE 170
+F G+ V H +P G T A N A+ + ++ G QFHPE + +
Sbjct: 118 MFAGLANPLPVARYHSLVGSNVPAGLTINAHF-NGMVMAVRHDADRVCGFQFHPESILTT 176
Query: 171 EGGKILE 177
+G ++LE
Sbjct: 177 QGARLLE 183
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 55.8 bits (133), Expect = 1e-08
Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 5/181 (2%)
Query: 2 ILVLDFGSQYTQLIARRLRERG----IYTEIVPFFESIENIQKKAPKGLILSGGPASVYA 57
IL+LD +T + +LR G IY + IE +Q L+LS GP +
Sbjct: 4 ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 63
Query: 58 KDAYKPSGKIFDLNVPILGICYGMQYLVDFFGGVVVGANEQEFGKAVLEITQNSVIFEGV 117
+ +PI+GIC G Q +V+ +GG V A E GKA +F G+
Sbjct: 64 AGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGM 123
Query: 118 KIKSLVWMSHMDKVIELPKGFTTLAKSPNSPHCAIEN-GKIFGLQFHPEVVQSEEGGKIL 176
V H +P T A+ ++ ++ G QFHPE + + G ++L
Sbjct: 124 ANPLPVARYHSLVGSNIPADLTVNARFGEMVMAVRDDRRRVCGFQFHPESILTTHGARLL 183
Query: 177 E 177
E
Sbjct: 184 E 184
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 53.5 bits (127), Expect = 5e-08
Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 18/193 (9%)
Query: 1 MILVLDFGSQYTQLIARRLRERGIYTEIVPFFE-SIENIQKKAPKGLILSGGPASVYAK- 58
+ L++D + IA+ + E G Y ++ E SI+ I++ P LI+S GP + +
Sbjct: 3 LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRE 62
Query: 59 ------DAYKPSGKIFDLNVPILGICYGMQYLVDFFGGVVVGANEQEFGKAVLEITQNSV 112
D K GK PILG+C G Q + FG + A + GK I N+
Sbjct: 63 DIGVSLDVIKYLGK----RTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNS 118
Query: 113 ---IFEGVKIKSLVWMSHMDKVIELPKGFTTLAKSPNSPHCAI---ENGKIFGLQFHPEV 166
++ G+ + H V E+ + A S E I+G+QFHPE
Sbjct: 119 PLSLYYGIAKEFKATRYHSLVVDEVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPES 178
Query: 167 VQSEEGGKILENF 179
V + G KIL NF
Sbjct: 179 VGTSLGYKILYNF 191
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 48.1 bits (113), Expect = 2e-06
Identities = 30/84 (35%), Positives = 42/84 (49%), Gaps = 3/84 (3%)
Query: 2 ILVLDFGSQYTQLIARRLRERGIYTEIVPFFESIENIQKKAPKGLILSGGPASVYAKD-A 60
++ DFG++ I R L +RG IVP S E++ K P G+ LS GP D A
Sbjct: 194 VVAYDFGAKRN--ILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYA 251
Query: 61 YKPSGKIFDLNVPILGICYGMQYL 84
K + ++P+ GIC G Q L
Sbjct: 252 ITAIQKFLETDIPVFGICLGHQLL 275
>pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
Length = 382
Score = 48.1 bits (113), Expect = 2e-06
Identities = 30/84 (35%), Positives = 42/84 (49%), Gaps = 3/84 (3%)
Query: 2 ILVLDFGSQYTQLIARRLRERGIYTEIVPFFESIENIQKKAPKGLILSGGPASVYAKD-A 60
++ DFG++ I R L +RG IVP S E++ K P G+ LS GP D A
Sbjct: 194 VVAYDFGAKRN--ILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYA 251
Query: 61 YKPSGKIFDLNVPILGICYGMQYL 84
K + ++P+ GIC G Q L
Sbjct: 252 ITAIQKFLETDIPVFGICLGHQLL 275
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 44.3 bits (103), Expect = 3e-05
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 2 ILVLDFGSQYTQLIARRLRERGIYTEIVPFFESIENIQKKAPKGLILSGGPASVYAKD-A 60
++ DFG++ I R L +RG IVP S E++ K P G+ LS GP D A
Sbjct: 194 VVAYDFGAKRN--ILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYA 251
Query: 61 YKPSGKIFDLNVPILGICYGMQYL 84
K + ++P+ GI G Q L
Sbjct: 252 ITAIQKFLETDIPVFGISLGHQLL 275
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 43.9 bits (102), Expect = 4e-05
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 2 ILVLDFGSQYTQLIARRLRERGIYTEIVPFFESIENIQKKAPKGLILSGGPASVYAKD-A 60
++ DFG++ I R L +RG IVP S E++ K P G+ LS GP D A
Sbjct: 193 VVAYDFGAKRN--ILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYA 250
Query: 61 YKPSGKIFDLNVPILGICYGMQYL 84
K + ++P+ GI G Q L
Sbjct: 251 ITAIQKFLETDIPVFGIXLGHQLL 274
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 43.9 bits (102), Expect = 4e-05
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 2 ILVLDFGSQYTQLIARRLRERGIYTEIVPFFESIENIQKKAPKGLILSGGPASVYAKD-A 60
++ DFG++ I R L +RG IVP S E++ K P G+ LS GP D A
Sbjct: 194 VVAYDFGAKRN--ILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYA 251
Query: 61 YKPSGKIFDLNVPILGICYGMQYL 84
K + ++P+ GI G Q L
Sbjct: 252 ITAIQKFLETDIPVFGIXLGHQLL 275
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE Sites
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE Sites
Length = 555
Score = 30.8 bits (68), Expect = 0.37
Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 39/212 (18%)
Query: 1 MILVLDFGSQYTQLIARRLRERGIYTEIVPFFESIENIQKKAPKGLILSGGPA------S 54
++ V+D S Q + + G ++V +S ++ LIL G +
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLV---KSPKDFNISGTSRLILPGVGNYGHFVDN 62
Query: 55 VYAKDAYKPSGKIFDLNVPILGICYGMQYLVDFFGGV----VVGANEQEF--------GK 102
++ + KP + + PI+GI G+Q L F G V G N +F K
Sbjct: 63 LFNRGFEKPIREYIESGKPIMGIXVGLQAL--FAGSVESPKSTGLNYIDFKLSRFDDSEK 120
Query: 103 AVLEITQNSVI-----FEGVK-------IKSLVWMSHMDKVIELPKGFTTLAKSPNSPH- 149
V EI NS I F G+ + S + + +K L +AK+
Sbjct: 121 PVPEIGWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEE 180
Query: 150 --CAIENGKIFGLQFHPEVVQSEEGGKILENF 179
A+ IF QFHPE + G ++ENF
Sbjct: 181 FIAAVNKNNIFATQFHPE-KSGKAGLNVIENF 211
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 30.0 bits (66), Expect = 0.64
Identities = 29/113 (25%), Positives = 47/113 (40%), Gaps = 10/113 (8%)
Query: 74 ILGICYGMQYLVD-------FFGGVVVGANEQEF-GKAVLEITQNSVIFEGVKIKSLVWM 125
++G+C GMQ L + G ++ N + + + + N VIF+ +
Sbjct: 82 VVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYF 141
Query: 126 SHMDKVI-ELPKGFTTLAKSPNSPHCAIENGKIFGLQFHPEVVQSEEGGKILE 177
H + + E T A+ G+I G QFHPE S+ G K+LE
Sbjct: 142 VHTYRAVCEEEHVLGTTEYDGEIFPSAVRKGRILGFQFHPE-KSSKIGRKLLE 193
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The
(Beta- Alpha)8-Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 201
Score = 30.0 bits (66), Expect = 0.64
Identities = 29/113 (25%), Positives = 47/113 (40%), Gaps = 10/113 (8%)
Query: 74 ILGICYGMQYLVD-------FFGGVVVGANEQEF-GKAVLEITQNSVIFEGVKIKSLVWM 125
++G+C GMQ L + G ++ N + + + + N VIF+ +
Sbjct: 80 VVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYF 139
Query: 126 SHMDKVI-ELPKGFTTLAKSPNSPHCAIENGKIFGLQFHPEVVQSEEGGKILE 177
H + + E T A+ G+I G QFHPE S+ G K+LE
Sbjct: 140 VHTYRAVCEEEHVLGTTEYDGEIFPSAVRKGRILGFQFHPE-KSSKIGRKLLE 191
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 28.5 bits (62), Expect = 1.9
Identities = 14/52 (26%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Query: 97 EQEFGKAVLEITQNSVIFEGVKIKSLVWMSHMDKVIELPKGFTTLAKSPNSP 148
E++FGK + + ++ V K WM H+D + +L +G A + +P
Sbjct: 700 EEQFGKEQMREFEKVIVLRAVDSK---WMDHIDAMDQLRQGIHLRAYAQTNP 748
>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7O|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
Length = 399
Score = 26.9 bits (58), Expect = 5.4
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 266 LNTIDAKEVFLSKLKGVSEPELKRKIIGETFIEVFEKEAKKHHLKGKIEFLA-------- 317
+ ID + + V+ PE+K +I T+++ + A K K EF+
Sbjct: 296 IKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFD 355
Query: 318 QGTLYPD---VIESVSVKGPSKVIK 339
+G ++ D E +++ PS VI+
Sbjct: 356 EGYIFGDGGIGFERINLAAPSSVIQ 380
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 26.6 bits (57), Expect = 7.1
Identities = 45/197 (22%), Positives = 84/197 (41%), Gaps = 35/197 (17%)
Query: 302 KEAKKHHLKGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFKL-----I 356
KE KH +K IE + + + E + K PS V++ + +GG +D + +
Sbjct: 37 KEIMKHIVK--IEVKGEEAVKKEAAEKLLEKVPSDVLEMYKAIGGKIYIVDGDITKHISL 94
Query: 357 EPLRELFKDEVRLLGKELGVSQDFLMRHPFPGPGLAVRILGEISESKIKRLQEADFIFIE 416
E L E K + GK+ + + ++ P L + + SE ++ ++A ++ E
Sbjct: 95 EALSEDKKKIKDIYGKDALLHEHYVYAKEGYEPVLVI----QSSEDYVENTEKALNVYYE 150
Query: 417 --ELKKANLYDKVWQAFCVLLNVNSVGVMGDNRTYENAICLRAVNASDGMTASFS--FLE 472
++ ++ K+ Q + L+V + T +NA + SDG F+ E
Sbjct: 151 IGKILSRDILSKINQPYQKFLDVLN--------TIKNA------SDSDGQDLLFTNQLKE 196
Query: 473 H------SFLEKVSNRI 483
H FLE+ SN +
Sbjct: 197 HPTDFSVEFLEQNSNEV 213
>pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 26.6 bits (57), Expect = 7.1
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 417 ELKKANLYDKVWQAFCVLLNVNSVGVMGDNRTYENAICLRAVNASDGMTASFSFLEHSFL 476
E+++ +V F L +N+ V+ N T + I ++S + S F+ S +
Sbjct: 37 EIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLI 96
Query: 477 EKVSNRITNEVSGINRVVYDITSKPPG 503
I +E G+NR + D + PPG
Sbjct: 97 S-----IRDEKDGLNRCLPDGQTLPPG 118
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 26.2 bits (56), Expect = 9.2
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 234 KDNLIAVFVDHGLLRKNEKERVQAMFKDLKIPLNTIDAKEVFLSKLKGVSEPE 286
KD+L F G L +E + AM K+ P+N +F KLKG ++PE
Sbjct: 44 KDDLRETFAAMGRLNVKNEE-LDAMIKEASGPINFTVFLTMFGEKLKG-ADPE 94
>pdb|1G71|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna Primase
pdb|1G71|B Chain B, Crystal Structure Of Pyrococcus Furiosus Dna Primase
Length = 347
Score = 26.2 bits (56), Expect = 9.2
Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 3/68 (4%)
Query: 356 IEPLRELFKDEVRLLGKELGVSQDFLMRHPFPGPGLAVRILGEISESKIKRLQEADFIFI 415
+E +EL KD + +L +ELG ++ + G G +RIL E + + +E FI
Sbjct: 118 LEDAKELAKDTLIILREELGFENIHVV---YSGRGYHIRILDEWALQLDSKSRERILAFI 174
Query: 416 EELKKANL 423
+ N+
Sbjct: 175 SASEIENV 182
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 26.2 bits (56), Expect = 9.2
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 234 KDNLIAVFVDHGLLRKNEKERVQAMFKDLKIPLNTIDAKEVFLSKLKGVSEPE 286
KD+L F G L +E + AM K+ P+N +F KLKG ++PE
Sbjct: 26 KDDLRETFAAMGRLNVKNEE-LDAMIKEASGPINFTVFLTMFGEKLKG-ADPE 76
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,990,406
Number of Sequences: 13198
Number of extensions: 125923
Number of successful extensions: 339
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 21
length of query: 508
length of database: 2,899,336
effective HSP length: 92
effective length of query: 416
effective length of database: 1,685,120
effective search space: 701009920
effective search space used: 701009920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)