BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645039|ref|NP_207209.1| hypothetical protein
[Helicobacter pylori 26695]
(105 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GGI|H Chain H, Igg2a Fab Fragment (50.1) Complex With ... 26 0.75
pdb|1GGB|H Chain H, Igg2a Fab Fragment (50.1) >gi|442936|pd... 26 0.75
pdb|1JRH|H Chain H, Complex (AntibodyANTIGEN) 25 1.7
pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxid... 24 2.9
pdb|1EYS|L Chain L, Crystal Structure Of Photosynthetic Rea... 23 3.7
pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex >gi|4... 23 3.7
pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex 23 3.7
pdb|1KOQ|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase 23 4.9
pdb|1KOQ|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase 23 4.9
pdb|1KOP|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydras... 23 4.9
pdb|1KXQ|E Chain E, Camelid Vhh Domain In Complex With Porc... 23 6.4
pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer) >gi|72... 22 8.3
>pdb|1GGI|H Chain H, Igg2a Fab Fragment (50.1) Complex With 16-Residue
Peptide (Residues 311-328 Of Hiv-1 Gp120 (Mn Isolate))
pdb|1GGI|J Chain J, Igg2a Fab Fragment (50.1) Complex With 16-Residue
Peptide (Residues 311-328 Of Hiv-1 Gp120 (Mn Isolate))
Length = 222
Score = 25.8 bits (55), Expect = 0.75
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 30 SGRSAVWLAHLVWDQGVEGSNP 51
SG+ WLAH+ WD G + NP
Sbjct: 43 SGKGLEWLAHIFWD-GDKRYNP 63
>pdb|1GGB|H Chain H, Igg2a Fab Fragment (50.1)
pdb|1GGC|H Chain H, Igg2a Fab Fragment (50.1)
Length = 215
Score = 25.8 bits (55), Expect = 0.75
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 30 SGRSAVWLAHLVWDQGVEGSNP 51
SG+ WLAH+ WD G + NP
Sbjct: 43 SGKGLEWLAHIFWD-GDKRYNP 63
>pdb|1JRH|H Chain H, Complex (AntibodyANTIGEN)
Length = 219
Score = 24.6 bits (52), Expect = 1.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 30 SGRSAVWLAHLVWD 43
SG+ WLAH+ WD
Sbjct: 43 SGKGLEWLAHIWWD 56
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 23.9 bits (50), Expect = 2.9
Identities = 12/22 (54%), Positives = 13/22 (58%)
Query: 66 RFFGRISLPFRMVGVAQSVRAS 87
RF GR PF VGV + RAS
Sbjct: 89 RFLGRYGNPFGRVGVDANGRAS 110
>pdb|1EYS|L Chain L, Crystal Structure Of Photosynthetic Reaction Center From
A Thermophilic Bacterium, Thermochromatium Tepidum
Length = 280
Score = 23.5 bits (49), Expect = 3.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 63 FCLRFFGRISLPFRMVGVAQSVRASDCGPEG 93
F + FFG + F ++GV V + GP G
Sbjct: 29 FYVGFFGVVGFCFTLLGVLLIVWGATIGPTG 59
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 23.5 bits (49), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 80 VAQSVRASDCGPEGRGFDSHLPPHL 104
+A+++ + C PE R F + P HL
Sbjct: 57 IAEALLGAGCDPELRDFRGNTPLHL 81
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 23.5 bits (49), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 80 VAQSVRASDCGPEGRGFDSHLPPHL 104
+A+++ + C PE R F + P HL
Sbjct: 60 IAEALLGAGCDPELRDFRGNTPLHL 84
>pdb|1KOQ|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase
Length = 222
Score = 23.1 bits (48), Expect = 4.9
Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Query: 28 KISGR-SAVWLAHLVWDQGVEGSNPFAPTTFLHNLLFCLRFFGRISLPFRMVGVA 81
K +GR S++W + V+ + PF +T L L RF G ++ P GV+
Sbjct: 128 KTNGRLSSIWNVMPMTAGKVKLNQPFDASTLLPKRLKYYRFAGSLTTPPCTEGVS 182
>pdb|1KOQ|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase
Length = 221
Score = 23.1 bits (48), Expect = 4.9
Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Query: 28 KISGR-SAVWLAHLVWDQGVEGSNPFAPTTFLHNLLFCLRFFGRISLPFRMVGVA 81
K +GR S++W + V+ + PF +T L L RF G ++ P GV+
Sbjct: 127 KTNGRLSSIWNVMPMTAGKVKLNQPFDASTLLPKRLKYYRFAGSLTTPPCTEGVS 181
>pdb|1KOP|A Chain A, Neisseria Gonorrhoeae Carbonic Anhydrase
pdb|1KOP|B Chain B, Neisseria Gonorrhoeae Carbonic Anhydrase
Length = 223
Score = 23.1 bits (48), Expect = 4.9
Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Query: 28 KISGR-SAVWLAHLVWDQGVEGSNPFAPTTFLHNLLFCLRFFGRISLPFRMVGVA 81
K +GR S++W + V+ + PF +T L L RF G ++ P GV+
Sbjct: 129 KTNGRLSSIWNVMPMTAGKVKLNQPFDASTLLPKRLKYYRFAGSLTTPPCTEGVS 183
>pdb|1KXQ|E Chain E, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|F Chain F, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|G Chain G, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|H Chain H, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
Length = 120
Score = 22.7 bits (47), Expect = 6.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 8 VFLKNYAQKLENSAIITLHVKISGRSAVWLAHLVWDQGVE 47
V+L+ + K E++ I S R A W + W QG +
Sbjct: 76 VYLQMNSLKPEDTGIYYCATGNSVRLASWEGYFYWGQGTQ 115
>pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer)
pdb|1QNE|B Chain B, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
pdb|1VOK|B Chain B, Arabidopsis Thaliana Tbp (Dimer)
pdb|1QN6|B Chain B, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNB|B Chain B, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1VOL|B Chain B, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
pdb|1QNE|A Chain A, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
pdb|1QN8|B Chain B, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNC|B Chain B, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNA|B Chain B, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN5|B Chain B, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN4|B Chain B, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN9|B Chain B, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN3|B Chain B, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN7|A Chain A, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN7|B Chain B, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN6|A Chain A, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN5|A Chain A, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNB|A Chain A, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNC|A Chain A, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN4|A Chain A, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN9|A Chain A, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN3|A Chain A, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN8|A Chain A, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNA|A Chain A, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution
Length = 200
Score = 22.3 bits (46), Expect = 8.3
Identities = 8/9 (88%), Positives = 9/9 (99%)
Query: 43 DQGVEGSNP 51
DQG+EGSNP
Sbjct: 3 DQGLEGSNP 11
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.328 0.143 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 623,228
Number of Sequences: 13198
Number of extensions: 21668
Number of successful extensions: 67
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 13
length of query: 105
length of database: 2,899,336
effective HSP length: 81
effective length of query: 24
effective length of database: 1,830,298
effective search space: 43927152
effective search space used: 43927152
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)