BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645040|ref|NP_207210.1| hypothetical protein
[Helicobacter pylori 26695]
         (32 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1CD1|A  Chain A, Cd1(Mouse) Antigen Presenting Molecule ...    25  2.0
pdb|1IIJ|A  Chain A, Solution Structure Of The NeuERBB-2 Mem...    23  5.7

>pdb|1CD1|A Chain A, Cd1(Mouse) Antigen Presenting Molecule
 pdb|1CD1|C Chain C, Cd1(Mouse) Antigen Presenting Molecule
          Length = 315

 Score = 25.0 bits (53), Expect = 2.0
 Identities = 7/22 (31%), Positives = 17/22 (76%)

Query: 7   GLLIFLILVFLVGIGYYIFMVF 28
           GL++F++L+ LV +G  ++ ++
Sbjct: 284 GLIVFIVLIMLVVVGAVVYYIW 305



>pdb|1IIJ|A Chain A, Solution Structure Of The NeuERBB-2 Membrane Spanning
          Segment
          Length = 35

 Score = 23.5 bits (49), Expect = 5.7
 Identities = 10/14 (71%), Positives = 13/14 (92%)

Query: 7  GLLIFLILVFLVGI 20
          G+L+FLILV +VGI
Sbjct: 16 GVLLFLILVVVVGI 29



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.343    0.162    0.521 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,383
Number of Sequences: 13198
Number of extensions: 2506
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 32
length of database: 2,899,336
effective HSP length: 8
effective length of query: 24
effective length of database: 2,793,752
effective search space: 67050048
effective search space used: 67050048
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 47 (22.7 bits)