BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645043|ref|NP_207213.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(623 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PHO| Phosphoporin (Phoe) 30 0.61
pdb|2PIL| Crystallographic Structure Of Phosphorylated Pi... 29 1.4
pdb|1AY2| Structure Of The Fiber-Forming Protein Pilin At... 29 1.8
pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Aden... 28 2.3
pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adeny... 28 2.3
pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Aden... 28 2.3
pdb|1E12|A Chain A, Halorhodopsin, A Light-Driven Chloride ... 28 2.3
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Syn... 28 2.3
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetas... 28 2.3
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 28 3.0
pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin... 28 3.0
pdb|1F99|A Chain A, Crystal Structure Of R-Phycocyanin From... 27 5.2
pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase ... 27 6.8
>pdb|1PHO| Phosphoporin (Phoe)
Length = 330
Score = 30.4 bits (67), Expect = 0.61
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 130 YRFIDKIRSSID-IFSEQKDVESISDAFLLR-LGQFKLYTFPKNLGNVKMHELEQMFSDY 187
Y+F +R S+ + S+ KD+E I D L+ + Y F KN+ +++ Q+ SD
Sbjct: 253 YQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDN 312
Query: 188 ELRLN 192
+L +N
Sbjct: 313 KLNIN 317
>pdb|2PIL| Crystallographic Structure Of Phosphorylated Pilin From Neisseria:
Phosphoserine Sites Modify Type Iv Pilus Surface
Chemistry
Length = 159
Score = 29.3 bits (64), Expect = 1.4
Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Query: 372 LIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAV--KDVLANFFASVILLLDNSFSQG 429
L+ ++A++G+L + + A+ LA K + ++ + +N+ S G
Sbjct: 7 LMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAG 66
Query: 430 DWIVCGEVEGTVV-EMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSRRKVGRRIKMEIG 488
+++G V E+ ++ + A L S N+E+ GK + W+RR+ G +K G
Sbjct: 67 VAXPPSDIKGKYVKEVEVKNGVVTA--TMLSSGVNNEIKGKKLSLWARRENG-SVKWFCG 123
Query: 489 LTYSSSQSALQLCVKDIKEMLENH 512
+ + KD KE+ H
Sbjct: 124 QPVTRTDDDTVADAKDGKEIDTKH 147
>pdb|1AY2| Structure Of The Fiber-Forming Protein Pilin At 2.6 Angstroms
Resolution
Length = 159
Score = 28.9 bits (63), Expect = 1.8
Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Query: 372 LIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAV--KDVLANFFASVILLLDNSFSQG 429
L+ ++A++G+L + + A+ LA K + ++ + +N+ S G
Sbjct: 7 LMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAG 66
Query: 430 DWIVCGEVEGTVV-EMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSRRKVGRRIKMEIG 488
+++G V E+ ++ + A L S N+E+ GK + W+RR+ G +K G
Sbjct: 67 VASPPSDIKGKYVKEVEVKNGVVTA--TMLSSGVNNEIKGKKLSLWARRENG-SVKWFCG 123
Query: 489 LTYSSSQSALQLCVKDIKEMLENH 512
+ + KD KE+ H
Sbjct: 124 QPVTRTDDDTVADAKDGKEIDTKH 147
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6- Phosphoryl-Imp, And Mg2+
Length = 431
Score = 28.5 bits (62), Expect = 2.3
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 405 LAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGTVVEM 444
+AV D+L + V LLD + +GD+++ +GT++++
Sbjct: 191 MAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDI 230
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6- Phosphoryl-Imp, And Mg2+
Length = 431
Score = 28.5 bits (62), Expect = 2.3
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 405 LAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGTVVEM 444
+AV D+L + V LLD + +GD+++ +GT++++
Sbjct: 191 MAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDI 230
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl- Imp, And Mg2+
Length = 431
Score = 28.5 bits (62), Expect = 2.3
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 405 LAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGTVVEM 444
+AV D+L + V LLD + +GD+++ +GT++++
Sbjct: 191 MAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDI 230
>pdb|1E12|A Chain A, Halorhodopsin, A Light-Driven Chloride Pump
Length = 253
Score = 28.5 bits (62), Expect = 2.3
Identities = 30/144 (20%), Positives = 60/144 (40%), Gaps = 10/144 (6%)
Query: 298 LFSCDVALDIFYYPNASPPKVSMWVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNF 357
+ + D+ + + A ++ A Y + A+ V+ L ALVT+ A ++
Sbjct: 116 VIAADIGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVVL-----SALVTDWAASASSAG 170
Query: 358 RKEVINLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFAS 417
E+ + + ++ +V LG V + +G + A +V DV A + +
Sbjct: 171 TAEIFDTLR-----VLTVVLWLGYPIVWAVGVEGLALVQSVGATSWAYSVLDVFAKYVFA 225
Query: 418 VILLLDNSFSQGDWIVCGEVEGTV 441
ILL + ++ V G+ GT+
Sbjct: 226 FILLRWVANNERTVAVAGQTLGTM 249
>pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
Length = 432
Score = 28.5 bits (62), Expect = 2.3
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 405 LAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGTVVEM 444
+AV D+L + V LLD + +GD+++ +GT++++
Sbjct: 192 MAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDI 231
>pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph7 At 25 Degrees
Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph7 At 25 Degrees
Celsius
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph6.5 And 25
Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph6.5 And 25
Degrees Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degrees Celsius
pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degree Celsius
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph6.5 And 25
Degrees Celsius
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1GIM| Crystal Structure Of Adenylosuccinate Synthetase From Escherichia
Coli Complexed With Gdp, Imp, Hadacidin, No3-, And Mg2+.
Data Collected At 100k (Ph6.5)
pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1NHT| Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1SON| Adenylosuccinate Synthetase In Complex With The Natural Feedback
Inhibitor Amp
pdb|1SOO| Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1JUY| Refined Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Hydantocidin
5'-Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
pdb|1GIN| Crystal Structure Of Adenylosuccinate Synthetase From Escherichia
Coli Complexed With Gdp, Imp, Hadacidin, No3-, And Mg2+.
Data Collected At 298k (Ph6.5).
pdb|1KSZ| Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
Length = 431
Score = 28.5 bits (62), Expect = 2.3
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 405 LAVKDVLANFFASVILLLDNSFSQGDWIVCGEVEGTVVEM 444
+AV D+L + V LLD + +GD+++ +GT++++
Sbjct: 191 MAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDI 230
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 28.1 bits (61), Expect = 3.0
Identities = 37/157 (23%), Positives = 63/157 (39%), Gaps = 34/157 (21%)
Query: 56 AEISLYNTQKNDLIKSLTSKVLNER-DKIGIDINQNLKEQEKIKKRLSKSINGDDFYTFM 114
AE+ IK + K+ +R D+I + + ++RL K IN +
Sbjct: 123 AELKALKESSESNIKDIKKKLEAKRLDRIQVXXRST--SDKAAQERLKKEINNSHIQEVV 180
Query: 115 KDRLSLDILLIDEILYRFIDKIRSSIDIFSEQKDVESISDAFLLRLGQFKLYTFPKNLGN 174
+ I L+ E R+ K+ E+K E++ A + GQ +
Sbjct: 181 QT-----IKLLTEKTARYQQKL--------EEKQAENLR-AIQEKEGQLQ---------- 216
Query: 175 VKMHELEQMFSDYELRLNTYT-EVLRYIKNHPKEVLP 210
++ ++YE +L T T EV +KN+ KEV P
Sbjct: 217 ------QEAVAEYEEKLKTLTVEVQEXVKNYXKEVFP 247
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 28.1 bits (61), Expect = 3.0
Identities = 31/115 (26%), Positives = 48/115 (40%), Gaps = 8/115 (6%)
Query: 34 IFNQINQLNQVIETYKKNPERSAEIS-LYNTQKNDLIKSLTSKVLNERDKIGIDINQNLK 92
IF +I + + P S+ ++ LY + L+ V E DK DI+ K
Sbjct: 3 IFREIASSMKGENVFISPPSISSVLTILYYGANGSTAEQLSKYVEKEADKNKDDIS--FK 60
Query: 93 EQEKIKKRLSKSINGDDFYTFMKDRLSLDILLIDEILYRFIDKIRSSIDIFSEQK 147
K+ R S ++ D F + D +D R +D I S+DIF+E K
Sbjct: 61 SMNKVYGRYS-AVFKDSFLRKIGDNFQT----VDFTDSRTVDAINKSVDIFTEGK 110
>pdb|1F99|A Chain A, Crystal Structure Of R-Phycocyanin From Polysiphonia At
2.4 A Resolution
pdb|1F99|K Chain K, Crystal Structure Of R-Phycocyanin From Polysiphonia At
2.4 A Resolution
pdb|1F99|M Chain M, Crystal Structure Of R-Phycocyanin From Polysiphonia At
2.4 A Resolution
Length = 162
Score = 27.3 bits (59), Expect = 5.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 180 LEQMFSDYELRLNTYTEVLRYIKNHPKEVLPKNLIMEVN--MDFVLNKIS 227
LE++ +EL + Y E L+YIKN+ L ++ E N +D+ +N +S
Sbjct: 115 LEEINRTFELSPSWYIEALKYIKNN--HGLSGDVANEANTYIDYAINTLS 162
>pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|B Chain B, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|C Chain C, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|D Chain D, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
Length = 303
Score = 26.9 bits (58), Expect = 6.8
Identities = 13/42 (30%), Positives = 23/42 (53%), Gaps = 2/42 (4%)
Query: 381 VLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLL 422
+LKQ+ + + A +A +G GG V VL FF + + ++
Sbjct: 162 ILKQMDYQIDAFVAGVGTGG--TISGVGRVLKGFFGNGVKIV 201
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.140 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,226,407
Number of Sequences: 13198
Number of extensions: 124178
Number of successful extensions: 334
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 13
length of query: 623
length of database: 2,899,336
effective HSP length: 94
effective length of query: 529
effective length of database: 1,658,724
effective search space: 877464996
effective search space used: 877464996
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)