BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645044|ref|NP_207214.1| cyclopropane fatty acid
synthase (cfa) [Helicobacter pylori 26695]
(389 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclo... 175 9e-45
pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclo... 174 2e-44
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclo... 172 8e-44
pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclo... 140 2e-34
pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Met... 40 6e-04
pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. J... 34 0.032
pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core... 33 0.055
pdb|1YUB| Solution Structure Of An Rrna Methyltransferase... 31 0.21
pdb|1XVA|A Chain A, Methyltransferase >gi|1942408|pdb|1XVA|... 29 1.0
pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glyci... 29 1.0
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransfer... 28 1.4
pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrat... 28 1.4
pdb|1CHR|A Chain A, Chloromuconate Cycloisomerase (E.C.5.5.... 28 2.3
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 27 3.0
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-A... 27 3.9
pdb|3GCB| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDEL... 26 6.7
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed ... 26 6.7
pdb|1A6R| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a 26 6.7
pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 Wi... 26 8.8
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 175 bits (443), Expect = 9e-45
Identities = 99/279 (35%), Positives = 146/279 (51%), Gaps = 18/279 (6%)
Query: 108 NISKHYDLGNDFYSIWLDETLSYSCAYFKKDDDTLHAAQLQKLDHTLKKLHLKPGEKLLD 167
N+ HYDL +DF+ ++LD T +YSCAYF++DD TL AQ+ K+D L KL+L+PG LLD
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLNLEPGMTLLD 70
Query: 168 IGCGWGYLSVKAAQEYGAEVMGITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRL 227
IGCGWG +A ++Y V+G+T+S Q K ++ + L ++ D +
Sbjct: 71 IGCGWGATMRRAIEKYDVNVVGLTLSENQAGHVQKMFDQMDTPRSRRVLLEGWEKFDEPV 130
Query: 228 YRFDKVVSVGMFEHVGKDNLPFYFKKVKEVLKRGGMFLLHSIL--CCFEGKTNA------ 279
D++VS+G FEH G +F+ L G LLH+I+ EG+
Sbjct: 131 ---DRIVSIGAFEHFGHQRYHHFFEVTHRTLPADGKMLLHTIVRPTFKEGREKGLTLTHE 187
Query: 280 ------WVDKYIFPGGYLPSLREVMSVMSECDFHLLMAESLRIHYAKTLDIWRNNFNHNL 333
++ IFPGG+LPS+ V + F + +SL++HYA+TLD+W N
Sbjct: 188 LVHFTKFILAEIFPGGWLPSIPTVHEYAEKVGFRVTAVQSLQLHYARTLDMWATALEANK 247
Query: 334 DQVKRLSYDERFIRMWDLYLRTCASAFRVGSADLFQLLL 372
DQ + + R + YL CA FR G D+ Q L
Sbjct: 248 DQAIAIQSQTVYDR-YMKYLTGCAKLFRQGYTDVDQFTL 285
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 174 bits (440), Expect = 2e-44
Identities = 98/277 (35%), Positives = 144/277 (51%), Gaps = 18/277 (6%)
Query: 107 SNISKHYDLGNDFYSIWLDETLSYSCAYFKKDDDTLHAAQLQKLDHTLKKLHLKPGEKLL 166
+N+ HYDL +DF+ ++LD T +YSCAYF++DD TL AQ+ K+D L KL L+PG LL
Sbjct: 10 ANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDXTLQEAQIAKIDLALGKLGLQPGXTLL 69
Query: 167 DIGCGWGYLSVKAAQEYGAEVMGITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGR 226
D+GCGWG +A ++Y V+G+T+S Q + V + L ++ D
Sbjct: 70 DVGCGWGATXXRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 129
Query: 227 LYRFDKVVSVGMFEHVGKDNLPFYFKKVKEVLKRGGMFLLHSILCCFEGKTN-------- 278
+ D++VS+G FEH G + +F +L G+ LLH+I + +
Sbjct: 130 V---DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVXLLHTITGLHPKEIHERGLPXSF 186
Query: 279 ------AWVDKYIFPGGYLPSLREVMSVMSECDFHLLMAESLRIHYAKTLDIWRNNFNHN 332
++ IFPGG LPS+ V S F + +SL+ HYAKTLD+W N
Sbjct: 187 TFARFLKFIVTEIFPGGRLPSIPXVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQAN 246
Query: 333 LDQVKRLSYDERFIRMWDLYLRTCASAFRVGSADLFQ 369
Q L +E + R + YL CA FR+G D+ Q
Sbjct: 247 KGQAIALQSEEVYER-YXKYLTGCAEXFRIGYIDVNQ 282
>pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
Length = 287
Score = 172 bits (435), Expect = 8e-44
Identities = 98/277 (35%), Positives = 145/277 (51%), Gaps = 18/277 (6%)
Query: 107 SNISKHYDLGNDFYSIWLDETLSYSCAYFKKDDDTLHAAQLQKLDHTLKKLHLKPGEKLL 166
+N+ HYDL +DF+ ++LD T +YSCAYF++DD TL AQ+ K+D L KL L+PG LL
Sbjct: 10 ANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLL 69
Query: 167 DIGCGWGYLSVKAAQEYGAEVMGITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGR 226
D+GCGWG ++A ++Y V+G+T+S Q + V + L ++ D
Sbjct: 70 DVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 129
Query: 227 LYRFDKVVSVGMFEHVGKDNLPFYFKKVKEVLKRGGMFLLHSILCCFEGKTN-------- 278
+ D++VS+G FEH G + +F +L G+ LLH+I + +
Sbjct: 130 V---DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSF 186
Query: 279 ------AWVDKYIFPGGYLPSLREVMSVMSECDFHLLMAESLRIHYAKTLDIWRNNFNHN 332
++ IFPGG LPS+ V S F + +SL+ HYAKTLD+W N
Sbjct: 187 TFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQAN 246
Query: 333 LDQVKRLSYDERFIRMWDLYLRTCASAFRVGSADLFQ 369
Q L +E + R + YL CA FR+G D+ Q
Sbjct: 247 KGQAIALQSEEVYER-YMKYLTGCAEMFRIGYIDVNQ 282
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
Length = 302
Score = 140 bits (353), Expect = 2e-34
Identities = 87/285 (30%), Positives = 135/285 (46%), Gaps = 25/285 (8%)
Query: 109 ISKHYDLGNDFYSIWLDETLSYSCAYFKKDDDTLHAAQLQKLDHTLKKLHLKPGEKLLDI 168
+ HYD N+F+ +WLD +++YSCAYF++ D TL AQ K L KL+L+PG LLDI
Sbjct: 20 VRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDI 79
Query: 169 GCGWGYLSVKAAQEYGAEVMGITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLY 228
GCGWG A EY V+G+T+S QY E+ + +++ +++ D +
Sbjct: 80 GCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV- 138
Query: 229 RFDKVVSVGMFEH-------VGKDNLPFYFKKVKEVLKRGGMFLLHSILCCFEGKTN--- 278
D++VS+G FEH G + +FKK + G LLH+I + +
Sbjct: 139 --DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELG 196
Query: 279 -----------AWVDKYIFPGGYLPSLREVMSVMSECDFHLLMAESLRIHYAKTLDIWRN 327
++ IFPGG LP + +V S + + + +Y TL+ W +
Sbjct: 197 LTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWAD 256
Query: 328 NFNHNLDQVKRLSYDERFIRMWDLYLRTCASAFRVGSADLFQLLL 372
+ D+ L E ++ YLR C+ FR D+ Q L
Sbjct: 257 ALQAHKDEAIALKGQET-CDIYMHYLRGCSDLFRDKYTDVCQFTL 300
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 39.7 bits (91), Expect = 6e-04
Identities = 24/74 (32%), Positives = 41/74 (54%), Gaps = 1/74 (1%)
Query: 165 LLDIGCGWGYLSVKAAQEYGAEVMGITISSEQYKQANKRVQELGLEDKVTIKLLNYQDLD 224
+LD+GCG G LS+ AA+ V+G+ +SS + A + V+ G DK+T+ +D+
Sbjct: 42 VLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH 100
Query: 225 GRLYRFDKVVSVGM 238
+ D ++S M
Sbjct: 101 LPFPKVDIIISEWM 114
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 33.9 bits (76), Expect = 0.032
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 135 FKKDDDTLHAAQLQKLDHTL-KKLHLKPGEKLLDIGCGWGYLSVKAAQEYGAEVMGITIS 193
FK D ++ K L + + + + +LD+GCG+G + + A E +
Sbjct: 25 FKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---------VK 75
Query: 194 SEQYKQANKRVQELGLEDKVTIKLLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLPFYFKK 253
S N+R +L E+ IKL N + D R VV ++E+V KD Y K
Sbjct: 76 STTXADINRRAIKLAKEN---IKLNNLDNYDIR------VVHSDLYENV-KDRK--YNKI 123
Query: 254 VKEVLKRGGMFLLHSIL 270
+ R G +LH I+
Sbjct: 124 ITNPPIRAGKEVLHRII 140
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 33.1 bits (74), Expect = 0.055
Identities = 23/88 (26%), Positives = 44/88 (49%), Gaps = 1/88 (1%)
Query: 151 DHTLKKLHLKPGEKLLDIGCGWGYLSVKAAQEYGAEVMGITISSEQYKQANKRVQELGLE 210
D + H+ + +LD+GCG G LS+ AA+ +V+ + SE QA ++ LE
Sbjct: 35 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVD-QSEILYQAMDIIRLNKLE 93
Query: 211 DKVTIKLLNYQDLDGRLYRFDKVVSVGM 238
D + + +++ + + D ++S M
Sbjct: 94 DTIVLIKGKIEEVSLPVEKVDVIISEWM 121
>pdb|1YUB| Solution Structure Of An Rrna Methyltransferase (Ermam) That
Confers Macrolide-Lincosamide-Streptogramin Antibiotic
Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 31.2 bits (69), Expect = 0.21
Identities = 20/66 (30%), Positives = 37/66 (55%), Gaps = 4/66 (6%)
Query: 150 LDHTLKKLHLKPGEKLLDIGCGWGYLSVKAAQEYGAEVMGITISSEQYKQANKRVQELGL 209
L+ +K+L+LK + + +IG G G+L+ K A + +V I + S + N ++L L
Sbjct: 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLA-KISKQVTSIELDSHLF---NLSSEKLKL 73
Query: 210 EDKVTI 215
+VT+
Sbjct: 74 NTRVTL 79
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
Length = 292
Score = 28.9 bits (63), Expect = 1.0
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 164 KLLDIGCGWGYLSVKAAQEYGAEVMGITISSEQYKQANKRVQELGLE---DKVTIKLLNY 220
++LD+ CG G S+ +E G V + S + K A K E DK I+ N+
Sbjct: 59 RVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117
Query: 221 QDLDGRLYR---FDKVVSVG-MFEHV-----GKDNLPFYFKKVKEVLKRGGMFLL 266
LD + FD V+ +G F H+ + K + +++ GG+ ++
Sbjct: 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
Length = 292
Score = 28.9 bits (63), Expect = 1.0
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 164 KLLDIGCGWGYLSVKAAQEYGAEVMGITISSEQYKQANKRVQELGLE---DKVTIKLLNY 220
++LD+ CG G S+ +E G V + S + K A K E DK I+ N+
Sbjct: 59 RVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117
Query: 221 QDLDGRLYR---FDKVVSVG-MFEHV-----GKDNLPFYFKKVKEVLKRGGMFLL 266
LD + FD V+ +G F H+ + K + +++ GG+ ++
Sbjct: 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172
>pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 28.5 bits (62), Expect = 1.4
Identities = 26/101 (25%), Positives = 50/101 (48%), Gaps = 9/101 (8%)
Query: 159 LKPGEKLLDIGCGWGYLSVKAAQEYGAE--VMGITISSEQYKQANKRVQELGLEDKVTIK 216
L G ++L+IG G GY + ++ G + V+ + S + + A + V+ LG+E+ + +
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC 132
Query: 217 LLNYQDLDGRLYRFDKVVSVGMFEHVGKDNLP-FYFKKVKE 256
Y + +D + F VG D +P +F ++KE
Sbjct: 133 GDGYYGVP-EFSPYDVI-----FVTVGVDEVPETWFTQLKE 167
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1VID| Catechol O-Methyltransferase
Length = 221
Score = 28.5 bits (62), Expect = 1.4
Identities = 30/106 (28%), Positives = 51/106 (47%), Gaps = 4/106 (3%)
Query: 165 LLDIGCGWGYLSVKAAQ--EYGAEVMGITISSEQYKQANKRVQELGLEDKVTIKLLNYQD 222
+L++G GY +V+ A+ + GA ++ + ++ + + + GL+DKVTI QD
Sbjct: 62 VLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD 121
Query: 223 LDGRLYRFDKVVSVGM--FEHVGKDNLPFYFKKVKEVLKRGGMFLL 266
L +L + V ++ M +H LP K L R G LL
Sbjct: 122 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLL 167
>pdb|1CHR|A Chain A, Chloromuconate Cycloisomerase (E.C.5.5.1.7)
pdb|1CHR|B Chain B, Chloromuconate Cycloisomerase (E.C.5.5.1.7)
pdb|2CHR| Chloromuconate Cycloisomerase (Cmci) (E.C.5.5.1.7)
Length = 370
Score = 27.7 bits (60), Expect = 2.3
Identities = 20/46 (43%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Query: 332 NLDQVKRLSYDERFIRMWDLYLRTCASAF---RVGSADLFQLLLTN 374
N ++RLS + R M D L T ASAF R S D+F L L N
Sbjct: 227 NTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCN 272
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 27.3 bits (59), Expect = 3.0
Identities = 35/172 (20%), Positives = 69/172 (39%), Gaps = 19/172 (11%)
Query: 2 ISKFLLKSMFKQWKNGDYQVVFWDNSVYRNGEHSPKFTLKIHRPLKFSDIKKDMSLTIAE 61
+S+ ++ +K +Y FW N + N E+ + + +KKD +
Sbjct: 1065 LSQSNIEERYKIQSYSEYLKDFWGNPLMYNKEY---YMFNAGNKNSYIKLKKDSPV---- 1117
Query: 62 AYMDGVIDIEGSMDEVMHSLYLQTNYEHLHKHDNAKAIQKPIKESSN---ISKHYDLGND 118
G I ++ +S Y+ NY L+ + +K +S N + K + D
Sbjct: 1118 ----GEILTRSKYNQ--NSKYI--NYRDLYIGEKFIIRRKSNSQSINDDIVRKEDYIYLD 1169
Query: 119 FYSIWLDETLSYSCAYFKKDDDTLHAAQLQKLDHTLKKLHLKPGEKLLDIGC 170
F+++ E Y+ YFKK+++ L A + D + +K ++ C
Sbjct: 1170 FFNL-NQEWRVYTYKYFKKEEEKLFLAPISDSDEFYNTIQIKEYDEQPTYSC 1220
>pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine & Vyp(Isp)ha Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine & Vyp(Isp)ha Substrate
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 26.9 bits (58), Expect = 3.9
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 154 LKKLHLKPGEKLLDIGCGWGYLSVKAAQEYGAEVMGITISSEQYKQANKRVQELGLED 211
L+ +LKPG +L++G G G+ + ++ +V I E + A + ++ G+++
Sbjct: 84 LEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN 141
>pdb|3GCB| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 26.2 bits (56), Expect = 6.7
Identities = 18/67 (26%), Positives = 30/67 (43%), Gaps = 1/67 (1%)
Query: 86 NYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSYSCAYFKKDDDTLHAA 145
++ H H +N A Q + S +ISK +F S + + + DD L+
Sbjct: 2 HHHHHHASENL-AFQGAMASSIDISKINSWNKEFQSDLTHQLATTVLKNYNADDALLNKT 60
Query: 146 QLQKLDH 152
+LQK D+
Sbjct: 61 RLQKQDN 67
>pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
Length = 516
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/28 (42%), Positives = 15/28 (52%)
Query: 318 YAKTLDIWRNNFNHNLDQVKRLSYDERF 345
YA T+D W + N DQ SY +RF
Sbjct: 44 YAITVDFWWGDMEKNGDQQFDFSYAQRF 71
>pdb|1A6R| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 26.2 bits (56), Expect = 6.7
Identities = 18/67 (26%), Positives = 30/67 (43%), Gaps = 1/67 (1%)
Query: 86 NYEHLHKHDNAKAIQKPIKESSNISKHYDLGNDFYSIWLDETLSYSCAYFKKDDDTLHAA 145
++ H H +N A Q + S +ISK +F S + + + DD L+
Sbjct: 2 HHHHHHASENL-AFQGAMASSIDISKINSWNKEFQSDLTHQLATTVLKNYNADDALLNKT 60
Query: 146 QLQKLDH 152
+LQK D+
Sbjct: 61 RLQKQDN 67
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|H Chain H, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
Length = 205
Score = 25.8 bits (55), Expect = 8.8
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 126 ETLSYSCAYFKKDDDTLHAAQLQKLDHTLKKLHLKPGEKLLDIGCGWGYLSVKAAQEYGA 185
++ +S ++ KKD Q++ K + E L++ CG EY
Sbjct: 31 DSCEHSSSHSKKDK----VVTCQRVSQEEVKKWAESLENLINHECGLAAFKAFLKSEYSE 86
Query: 186 EVMGITISSEQYKQ 199
E + IS E+YK+
Sbjct: 87 ENIDFWISCEEYKK 100
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,392,265
Number of Sequences: 13198
Number of extensions: 103381
Number of successful extensions: 238
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 19
length of query: 389
length of database: 2,899,336
effective HSP length: 90
effective length of query: 299
effective length of database: 1,711,516
effective search space: 511743284
effective search space used: 511743284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)