BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645045|ref|NP_207215.1| methionyl-tRNA synthetase
(metS) [Helicobacter pylori 26695]
(650 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A8H| Methionyl-Trna Synthetase From Thermus Thermoph... 338 1e-93
pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methion... 166 8e-42
pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escheric... 166 1e-41
pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDI... 59 1e-09
pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Bindi... 59 1e-09
pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A ... 59 1e-09
pdb|1GD7|A Chain A, Crystal Structure Of A Bifunctional Pro... 55 3e-08
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus The... 52 2e-07
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 50 1e-06
pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophil... 45 3e-05
pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed Wit... 39 0.001
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Syn... 33 0.099
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiati... 30 0.64
pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiati... 30 0.84
pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetyln... 29 1.4
pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id:... 29 1.9
pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannasch... 28 2.4
pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilib... 27 5.4
pdb|4ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate H... 27 5.4
pdb|1E9I|D Chain D, Enolase From E.Coli >gi|16975437|pdb|1E... 27 5.4
pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methan... 27 5.4
pdb|1L8P|A Chain A, Mg-Phosphonoacetohydroxamate Complex Of... 27 5.4
pdb|1PDZ| Mol_id: 1; Molecule: Enolase; Chain: Null; Syno... 27 5.4
pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The ... 27 7.1
>pdb|1A8H| Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 338 bits (866), Expect = 1e-93
Identities = 193/488 (39%), Positives = 280/488 (56%), Gaps = 18/488 (3%)
Query: 6 ITTPIYYVNDIPHIGHAYTTLIADTLKKYYTLQGEEVFFLTGTDEHGQKIEQSARLRNQS 65
+TTPIYYVN PH+GHAYTT++AD L +++ L G FFLTGTDEHG+ + ++A+ +
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGED 66
Query: 66 PKAYADSISTIFKDQWDFFNLDYDGFIRTTDSEHQKCVQNAFEIMFEKGDIYKGAYSGYY 125
PKA+ D +S FK WD + YD FIRTT+ H+K VQ + ++E GDIY G Y G Y
Sbjct: 67 PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLY 126
Query: 126 CVSCESYCAISKADNTNDKVLCPDCLRETTLLEEESYFFRLSAYEKPLLDFYAKNPEAIL 185
CVSCE + + + LCP R +E +YFFR+ Y L ++ +NP+ I
Sbjct: 127 CVSCERF----YTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIR 182
Query: 186 PVYRKNEVTSFIEQGLLDLSITR--TSFEWGIPLPKKMNDPKHVVYVWLDALLNYASALG 243
P +NEV + + + + DLSI+R + WGIPLP D HV YVW DALLNY SAL
Sbjct: 183 PEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW---DENHVTYVWFDALLNYVSALD 239
Query: 244 YLNDLDNKMAHFECARHIVGKDILRFHAIYWPAFLMSLNLPLFKQLCVHGWWT-IEGVKM 302
Y + + + A H++GKDIL+ HA++WP L + +P+++ L V G+ +G KM
Sbjct: 240 Y-PEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKM 298
Query: 303 SKSLGNVLDAQKIAMEYGIEELRYFLLREVPFGQDGDFSKKALIERINANLNNDLGNLLN 362
SK+LGNV+D + +YG + LRY+LLRE+P+GQD S++AL R A+L +DLGNL+
Sbjct: 299 SKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQ 358
Query: 363 RLLGMAKKYFNHSLKSTKITAYYSKELEKVHQILDNANSFVPKMQLHKALEELFNVYDFL 422
R M ++ + +EL + + V +++ H ALEE L
Sbjct: 359 RTRAMLFRFAEGRIPE----PVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKAL 414
Query: 423 NKLIAKEEPWVLHKNNESEKLEALLSLIANALLQSSFLLYAFMPKSAVKLANA--FNTEI 480
N+ I +++PW L K E E+ A+L + L +S LL MP +L A E+
Sbjct: 415 NRYINEKKPWELFK-KEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEV 473
Query: 481 TPDNYERF 488
+ ER+
Sbjct: 474 RLEEAERW 481
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 166 bits (420), Expect = 8e-42
Identities = 138/560 (24%), Positives = 237/560 (41%), Gaps = 51/560 (9%)
Query: 2 QKSLITTPIYYVNDIPHIGHAYTTLIADTLKKYYTLQGEEVFFLTGTDEHGQKIEQSARL 61
+K L+T + Y N H+GH + AD +Y ++G EV F+ D HG I A+
Sbjct: 6 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 65
Query: 62 RNQSPKAYADSISTIFKDQWDFFNLDYDGFIRTTDSEHQKCVQNAFEIMFEKGDIYKGAY 121
+P+ +S + + FN+ YD + T E+++ + + + E G I
Sbjct: 66 LGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTI 125
Query: 122 SGYY----------------CVSCES------YCAISKADNTNDKVLCPDCL---RETTL 156
S Y C C+S C + A + +++ P + +
Sbjct: 126 SQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVM 185
Query: 157 LEEESYFFRLSAYEKPLLDFYAKNPEAILPVYRKNEVTSFIEQGLLDLSITRTSFEWGIP 216
+ E +FF L ++ + L A L N++ + E GL I+R + +G
Sbjct: 186 RDSEHFFFDLPSFSEML---QAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFE 242
Query: 217 LPKKMNDPKHVVYVWLDALLNYASALGYLNDLDNKMAHFEC---------ARHIVGKDIL 267
+P N P YVWLDA + Y + L D F+ H +GKDI+
Sbjct: 243 IP---NAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIV 299
Query: 268 RFHAIYWPAFLMSLNLPLFKQLCVHGWWTIEGVKMSKSLGNVLDAQKIAMEYGIEELRYF 327
FH+++WPA L N L VHG+ T+ G KMSKS G + A + + LRY+
Sbjct: 300 YFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYY 359
Query: 328 LLREVPFG-QDGDFSKKALIERINANLNNDLGNLLNRLLGMAKKYFNHSLKSTKITAYYS 386
++ D D + + ++R+NA++ N + NL +R G K F+ L S
Sbjct: 360 YTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELADPQLY 419
Query: 387 KELEKVHQILDNANSFVPKMQLHKALEELFNVYDFLNKLIAKEEPWVLHK-NNESEKLEA 445
K +++ A + KA+ E+ + D N+ + ++ PWV+ K L+A
Sbjct: 420 KTFTDAAEVIGEA---WESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQA 476
Query: 446 LLSLIANALLQSSFLLYAFMPKSAVKLANAFNTEITPDNYERFFKAKKLQDMILQDTEPL 505
+ S+ N L +PK + NTE+T D ++ K+ + L
Sbjct: 477 ICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTELTWDGIQQPLLGHKVNPF-----KAL 531
Query: 506 FSKMEKIEKTEKAGEASPEK 525
+++++ + + E EAS E+
Sbjct: 532 YNRID-MRQVEALVEASKEE 550
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 166 bits (419), Expect = 1e-41
Identities = 138/560 (24%), Positives = 237/560 (41%), Gaps = 51/560 (9%)
Query: 2 QKSLITTPIYYVNDIPHIGHAYTTLIADTLKKYYTLQGEEVFFLTGTDEHGQKIEQSARL 61
+K L+T + Y N H+GH + AD +Y ++G EV F+ D HG I A+
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 64
Query: 62 RNQSPKAYADSISTIFKDQWDFFNLDYDGFIRTTDSEHQKCVQNAFEIMFEKGDIYKGAY 121
+P+ +S + + FN+ YD + T E+++ + + + E G I
Sbjct: 65 LGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTI 124
Query: 122 SGYY----------------CVSCES------YCAISKADNTNDKVLCPDCL---RETTL 156
S Y C C+S C + A + +++ P + +
Sbjct: 125 SQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVM 184
Query: 157 LEEESYFFRLSAYEKPLLDFYAKNPEAILPVYRKNEVTSFIEQGLLDLSITRTSFEWGIP 216
+ E +FF L ++ + L A L N++ + E GL I+R + +G
Sbjct: 185 RDSEHFFFDLPSFSEML---QAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFE 241
Query: 217 LPKKMNDPKHVVYVWLDALLNYASALGYLNDLDNKMAHFEC---------ARHIVGKDIL 267
+P N P YVWLDA + Y + L D F+ H +GKDI+
Sbjct: 242 IP---NAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIV 298
Query: 268 RFHAIYWPAFLMSLNLPLFKQLCVHGWWTIEGVKMSKSLGNVLDAQKIAMEYGIEELRYF 327
FH+++WPA L N L VHG+ T+ G KMSKS G + A + + LRY+
Sbjct: 299 YFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYY 358
Query: 328 LLREVPFG-QDGDFSKKALIERINANLNNDLGNLLNRLLGMAKKYFNHSLKSTKITAYYS 386
++ D D + + ++R+NA++ N + NL +R G K F+ L S
Sbjct: 359 YTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELADPALY 418
Query: 387 KELEKVHQILDNANSFVPKMQLHKALEELFNVYDFLNKLIAKEEPWVLHKN-NESEKLEA 445
K +++ A + KA+ E+ + D N+ + ++ PWV+ K L+A
Sbjct: 419 KTFTDAAEVIGEA---WESREFGKAVREIMALADLANRYVDEQAPWVVAKQAGRDADLQA 475
Query: 446 LLSLIANALLQSSFLLYAFMPKSAVKLANAFNTEITPDNYERFFKAKKLQDMILQDTEPL 505
+ S+ N L +PK + NTE+T D ++ K+ + L
Sbjct: 476 ICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTELTWDGIQQPLLGHKVNPF-----KAL 530
Query: 506 FSKMEKIEKTEKAGEASPEK 525
+++++ + + E EAS E+
Sbjct: 531 YNRID-MRQVEALVEASKEE 549
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 174
Score = 59.3 bits (142), Expect = 1e-09
Identities = 27/102 (26%), Positives = 58/102 (56%)
Query: 549 DFKKVEIKVGLIKEAQRIEKSNKLLRLKVDLGEGRLRQIISGIALDYEPESLVGQMVCVV 608
D ++++++G I A++ ++ L +VD+GE R ++SG+ E + +MV ++
Sbjct: 5 DVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILL 64
Query: 609 ANLKPAKLMGEMSEGMILAVRDSDNLALISPTREKIAGSLIS 650
NLKPAK+ G +S+ M++ + + +++P + G I+
Sbjct: 65 CNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRIT 106
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 171
Score = 59.3 bits (142), Expect = 1e-09
Identities = 27/102 (26%), Positives = 58/102 (56%)
Query: 549 DFKKVEIKVGLIKEAQRIEKSNKLLRLKVDLGEGRLRQIISGIALDYEPESLVGQMVCVV 608
D ++++++G I A++ ++ L +VD+GE R ++SG+ E + +MV ++
Sbjct: 2 DVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILL 61
Query: 609 ANLKPAKLMGEMSEGMILAVRDSDNLALISPTREKIAGSLIS 650
NLKPAK+ G +S+ M++ + + +++P + G I+
Sbjct: 62 CNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRIT 103
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
pdb|1EUJ|B Chain B, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
Length = 166
Score = 59.3 bits (142), Expect = 1e-09
Identities = 27/102 (26%), Positives = 58/102 (56%)
Query: 549 DFKKVEIKVGLIKEAQRIEKSNKLLRLKVDLGEGRLRQIISGIALDYEPESLVGQMVCVV 608
D ++++++G I A++ ++ L +VD+GE R ++SG+ E + +MV ++
Sbjct: 5 DVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILL 64
Query: 609 ANLKPAKLMGEMSEGMILAVRDSDNLALISPTREKIAGSLIS 650
NLKPAK+ G +S+ M++ + + +++P + G I+
Sbjct: 65 CNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRIT 106
>pdb|1GD7|A Chain A, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|B Chain B, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|C Chain C, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|D Chain D, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities
Length = 109
Score = 54.7 bits (130), Expect = 3e-08
Identities = 35/105 (33%), Positives = 60/105 (56%), Gaps = 2/105 (1%)
Query: 547 IEDFKKVEIKVGLIKEAQRIEKSNK-LLRLKVDLGEGRLRQIISGIALDYEPESLVGQMV 605
+E F+ ++++VG + A+ EK+ K +L VDLG ++Q + I Y PE LVG++V
Sbjct: 4 LEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLV 63
Query: 606 CVVANLKPAKLMGEMSEGMILAVRD-SDNLALISPTREKIAGSLI 649
NL ++ G +SE ++L V D + + L++P RE G +
Sbjct: 64 VCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKV 108
>pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
Length = 878
Score = 52.4 bits (124), Expect = 2e-07
Identities = 44/163 (26%), Positives = 74/163 (44%), Gaps = 13/163 (7%)
Query: 18 HIGHAYTTLIADTLKKYYTLQGEEVFFLTGTDEHGQKIEQSARLRNQSPKAYADSISTIF 77
H+GH + D L ++ +QG EV G D G E +A PK + +
Sbjct: 49 HMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108
Query: 78 KDQWDFFNL--DYDGFIRTTDSEHQKCVQNAFEIMFEKGDIYKGAYSGYYCVSCESYCAI 135
K+ + D+D + T + E+ + Q F M+EKG Y+ +C C++ A
Sbjct: 109 KESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLA- 167
Query: 136 SKADNTNDKVLCPDCLR-ETTLLEE---ESYFFRLSAYEKPLL 174
N++V+ C R E T +E+ E ++ R++AY + LL
Sbjct: 168 ------NEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLL 204
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 49.7 bits (117), Expect = 1e-06
Identities = 39/137 (28%), Positives = 59/137 (42%), Gaps = 14/137 (10%)
Query: 12 YVNDIPHIGHAYTTLIADTLKKYYTLQGEEVFFLTGTDEHGQKIEQSARLRNQSPKAYAD 71
Y N H+GHA ++ D + +Y T+QG ++ G D HG IEQ+ + K +
Sbjct: 58 YANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMST 117
Query: 72 ----------SISTIFKDQWDFFNL----DYDGFIRTTDSEHQKCVQNAFEIMFEKGDIY 117
++ I + DF L D++ T E++ F M +KG IY
Sbjct: 118 AEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIY 177
Query: 118 KGAYSGYYCVSCESYCA 134
KG Y+ S ES A
Sbjct: 178 KGKKPVYWSPSSESSLA 194
Score = 32.7 bits (73), Expect = 0.13
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 22/170 (12%)
Query: 172 PLLDFYAKNPEAILPVYRKNEVTSFIEQGLLDLSITRTSFEWGIPLPKKMNDP------- 224
PL FYA+N E I+ N V + ++ R + + LP+ P
Sbjct: 462 PLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDL---LPEGFTHPGSPNGTF 518
Query: 225 ---KHVVYVWLDALLNYASALGYLNDLDNKMAHFECARHIVGKDILR--FHAIYWPAFLM 279
++ VW D+ ++ L +L F ++ G D R F++ + +
Sbjct: 519 TKETDIMDVWFDSGSSHRGVLETRPELS-----FPADMYLEGSDQYRGWFNSSITTS-VA 572
Query: 280 SLNLPLFKQLCVHGW-WTIEGVKMSKSLGNVLDAQKIAMEYGIEELRYFL 328
+ + +K L HG+ EG KMSKSLGNV+ ++ + G + R ++
Sbjct: 573 TRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWV 622
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
Length = 862
Score = 44.7 bits (104), Expect = 3e-05
Identities = 56/227 (24%), Positives = 92/227 (39%), Gaps = 34/227 (14%)
Query: 214 GIPLPKKMNDPKHVVYVWLDALLNYASALGYLNDLDNKMAHFECARHIVGKDILRFHAIY 273
G P K+ D V W + L S LG+ + ++ A + + G DIL
Sbjct: 442 GSPRLKRDED---VFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDIL----FL 494
Query: 274 WPAFLMSLNLPL-----FKQLCVHGWWTIE-GVKMSKSLGNVLDAQKIAMEYGIEELRYF 327
W + + FK + +HG E G KMSKS GNV+D ++ YG + LR+
Sbjct: 495 WVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFA 554
Query: 328 LLREVPFGQDGDFSKKALIERINANLNNDLGNLLNRLLGMAKKYFNHSLKSTKITAYYSK 387
L+ GQD + DL R L MA+ + N + + +
Sbjct: 555 LIYLATGGQD---------------IRLDL-----RWLEMARNFANKLYNAARFVLLSRE 594
Query: 388 ELEKVHQILDNANSFVPKMQLHKALEELFNVYDFLNKLIAKEEPWVL 434
+ A+ F+ + +L + +EE+ +Y+ L+ A E + L
Sbjct: 595 GFQAKEDTPTLADRFM-RSRLSRGVEEITALYEALDLAQAAREVYEL 640
Score = 34.7 bits (78), Expect = 0.034
Identities = 31/132 (23%), Positives = 52/132 (38%), Gaps = 18/132 (13%)
Query: 18 HIGHAYTTLIADTLKKYYTLQGEEVFFLTGTDEHGQKIEQSA-RLRNQSPKAYADSISTI 76
H+GHA + D L +Y ++G E +L GTD G + RL + K D
Sbjct: 50 HMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREK 109
Query: 77 FKDQ-WDF----------------FNLDYDGFIRTTDSEHQKCVQNAFEIMFEKGDIYKG 119
F ++ W + + D+ T D + + V+ AF + +G Y+
Sbjct: 110 FLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRA 169
Query: 120 AYSGYYCVSCES 131
+C CE+
Sbjct: 170 PRLVNWCPRCET 181
>pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed With Mupirocin
pdb|1ILE| Isoleucyl-Trna Synthetase
pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
Length = 821
Score = 39.3 bits (90), Expect = 0.001
Identities = 28/136 (20%), Positives = 56/136 (40%), Gaps = 21/136 (15%)
Query: 14 NDIPHIGHAYTTLIADTLKKYYTLQGEEVFFLTGTDEHGQKIEQSARLR----------- 62
N +PH+GHA D +Y T++G G D HG +E +
Sbjct: 50 NGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEA 109
Query: 63 ---NQSPKAYADSISTIFKDQWDFFN------LDYDGFIRTTDSEHQKCVQNAFEIMFEK 113
+ +A +S+ T ++ +W+ F +D + T + + + + + + +F++
Sbjct: 110 YGIERFNQACRESVFT-YEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDR 168
Query: 114 GDIYKGAYSGYYCVSC 129
G +Y+ YC C
Sbjct: 169 GLLYRDHKVVPYCPRC 184
Score = 38.1 bits (87), Expect = 0.003
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 286 FKQLCVHGWWTIE-GVKMSKSLGNVLDAQKIAMEYGIEELRYFLLREVPFGQDGDFSKKA 344
FK + HG E G KMSKS GNV+D I ++G + LR+++ P D F
Sbjct: 575 FKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNL 634
Query: 345 LIERI 349
+ E +
Sbjct: 635 VRETV 639
>pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
Length = 461
Score = 33.1 bits (74), Expect = 0.099
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 293 GWWTIEGVKMSKSLGNVLDAQKIAMEYGIEELRYFLL-----REVPFGQDGDFSKKALIE 347
G ++ KMSKSLGN + + Y E +RYFL+ ++ + ++ +A +E
Sbjct: 258 GMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALE 317
Query: 348 RI 349
R+
Sbjct: 318 RL 319
>pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
Length = 594
Score = 30.4 bits (67), Expect = 0.64
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 291 VHGWWTIEGVKMSKSLGNVLDAQKIAMEYGIEELRYFLLREVP--------FGQDGDFSK 342
+HGW EG ++ Q I ++ ++ Y L+ ++ F + DF+
Sbjct: 135 IHGWRVHEGRPFMETFSK----QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFAS 190
Query: 343 KALIERINANLNNDLGNLLNRLLGMAKKYFNHSLK 377
+ I I+A + LL L+G+A++Y LK
Sbjct: 191 QVSIIPISAITGEGIPELLTMLMGLAQQYLREQLK 225
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 30.0 bits (66), Expect = 0.84
Identities = 23/95 (24%), Positives = 40/95 (41%), Gaps = 12/95 (12%)
Query: 291 VHGWWTIEGVKMSKSLGNVLDAQKIAMEYGIEELRYFLLREVP--------FGQDGDFSK 342
+HGW EG + Q I ++ ++ Y L+ ++ F + DF+
Sbjct: 135 IHGWRVHEG----RPFXETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFAS 190
Query: 343 KALIERINANLNNDLGNLLNRLLGMAKKYFNHSLK 377
+ I I+A + LL L G+A++Y LK
Sbjct: 191 QVSIIPISAITGEGIPELLTXLXGLAQQYLREQLK 225
>pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
pdb|1F74|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F74|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F7B|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-Oxo-Sialic Acid
pdb|1F5Z|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F73|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F7B|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-Oxo-Sialic Acid
pdb|1F6K|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
Length = 293
Score = 29.3 bits (64), Expect = 1.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 8 TPIYYVNDIPHIGHAYTTLIADT 30
TP YY P I H Y T+IA+T
Sbjct: 107 TPFYYKFSFPEIKHYYDTIIAET 129
>pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id: 1; Molecule:
Adenovirus Type 2 Hexon; Chain: Null; Synonym:
Adenovirus Type 2 Polypeptide Ii
Length = 967
Score = 28.9 bits (63), Expect = 1.9
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 513 EKTEKAGEASPEKNEKEKKDAKEKAPLKQENYIGIEDFKKVEIKVGLIKEAQRIEKSNKL 572
E+TE +G A E E+E +D +E+ ++E + KK + + I KS
Sbjct: 135 EQTEDSGRAVAEDEEEEDEDEEEE---EEEQNARDQATKKTHVYAQAPLSGETITKSG-- 189
Query: 573 LRLKVDLGEGRLRQIISGIALDYEPESLVGQ 603
L++ D E + + + + + Y+PE +G+
Sbjct: 190 LQIGSDNAETQAKPVYADPS--YQPEPQIGE 218
>pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77| Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 28.5 bits (62), Expect = 2.4
Identities = 13/29 (44%), Positives = 19/29 (64%)
Query: 524 EKNEKEKKDAKEKAPLKQENYIGIEDFKK 552
EK K +++ KEKA LK + I EDF++
Sbjct: 88 EKTRKVRREMKEKAELKMKEAIKKEDFEE 116
>pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilibrium Mixture Of
2'-Phosphoglyceate And Phosphoenolpyruvate
pdb|1ONE|B Chain B, Yeast Enolase Complexed With An Equilibrium Mixture Of
2'-Phosphoglyceate And Phosphoenolpyruvate
pdb|1EBH|A Chain A, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
Complexed With Mg 2+
pdb|1EBH|B Chain B, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
Complexed With Mg 2+
pdb|2ONE|A Chain A, Asymmetric Yeast Enolase Dimer Complexed With Resolved
2'-Phosphoglycerate And Phosphoenolpyruvate
pdb|2ONE|B Chain B, Asymmetric Yeast Enolase Dimer Complexed With Resolved
2'-Phosphoglycerate And Phosphoenolpyruvate
pdb|1EBG|A Chain A, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
(Apo Form)
pdb|1EBG|B Chain B, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
(Apo Form)
Length = 436
Score = 27.3 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 554 EIKVGLIKEAQRIEKSNKLLRLKVDLGE 581
+IK G ++R+ K N+LLR++ +LG+
Sbjct: 394 QIKTGAPARSERLAKLNQLLRIEEELGD 421
>pdb|4ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) (Holo)
pdb|5ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With 2-Phospho-D-Glyceric Acid And Calcium
pdb|6ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With Phosphoglycolic Acid And Zinc
pdb|7ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With 2-Phospho-D-Glyceric Acid And Magnesium
pdb|3ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) (Apo)
pdb|1ELS| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complexed
With Phosphonoacetohydroxamate And Manganese
pdb|1NEL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With Orthophosphate, Fluoride And Magnesium
Length = 436
Score = 27.3 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 554 EIKVGLIKEAQRIEKSNKLLRLKVDLGE 581
+IK G ++R+ K N+LLR++ +LG+
Sbjct: 394 QIKTGAPARSERLAKLNQLLRIEEELGD 421
>pdb|1E9I|D Chain D, Enolase From E.Coli
pdb|1E9I|A Chain A, Enolase From E.Coli
pdb|1E9I|B Chain B, Enolase From E.Coli
pdb|1E9I|C Chain C, Enolase From E.Coli
Length = 431
Score = 27.3 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 554 EIKVGLIKEAQRIEKSNKLLRLKVDLGE 581
+IK G + + R+ K N+L+R++ LGE
Sbjct: 390 QIKTGSMSRSDRVAKYNQLIRIEEALGE 417
>pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|B Chain B, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 433
Score = 27.3 bits (59), Expect = 5.4
Identities = 19/66 (28%), Positives = 34/66 (50%), Gaps = 4/66 (6%)
Query: 582 GRLRQIISGIALDYEPESLVGQMVCVVANLKPAKLMGEMSEGMILAVRDSDNLALISPTR 641
G+ RQI+ G L+Y+ +VG + N+K + E + ++ V+ +L + SP
Sbjct: 60 GKGRQIL-GRGLNYD---IVGNADAIAENVKKLVQVDEGDDTNVIKVKGGKSLLIQSPKS 115
Query: 642 EKIAGS 647
IAG+
Sbjct: 116 RIIAGA 121
>pdb|1L8P|A Chain A, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|B Chain B, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|C Chain C, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|D Chain D, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
Length = 436
Score = 27.3 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 554 EIKVGLIKEAQRIEKSNKLLRLKVDLGE 581
+IK G ++R+ K N+LLR++ +LG+
Sbjct: 394 QIKTGAPARSERLAKLNQLLRIEEELGD 421
>pdb|1PDZ| Mol_id: 1; Molecule: Enolase; Chain: Null; Synonym:
2-Phospho-D-Glycerate Dehydratase; Ec: 4.2.1.11;
Heterogen: Phosphoglycolate; Heterogen: Mn 2+
pdb|1PDY| Mol_id: 1; Molecule: Enolase; Chain: Null; Synonym:
2-Phospho-D-Glycerate Dehydratase; Ec: 4.2.1.11
Length = 434
Score = 27.3 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 554 EIKVGLIKEAQRIEKSNKLLRLKVDLGEG 582
+IK G ++R+ K N++LR++ +LG G
Sbjct: 394 QIKTGAPCRSERLAKYNQILRIEEELGSG 422
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 26.9 bits (58), Expect = 7.1
Identities = 20/49 (40%), Positives = 27/49 (54%), Gaps = 3/49 (6%)
Query: 308 NVLDAQKIAMEYGIEELRYFLL---REVPFGQDGDFSKKALIERINANL 353
+V DAQ +A +YGI + LL EV + G SK L E ++ANL
Sbjct: 58 DVDDAQDVAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 106
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,715,805
Number of Sequences: 13198
Number of extensions: 159606
Number of successful extensions: 486
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 30
length of query: 650
length of database: 2,899,336
effective HSP length: 94
effective length of query: 556
effective length of database: 1,658,724
effective search space: 922250544
effective search space used: 922250544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)