BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645046|ref|NP_207216.1| hypothetical protein
[Helicobacter pylori 26695]
(335 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of ... 29 0.66
pdb|1HNG|A Chain A, Cd2 (Rat) >gi|999827|pdb|1HNG|B Chain B... 27 2.5
pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-G... 27 3.3
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 29.3 bits (64), Expect = 0.66
Identities = 15/61 (24%), Positives = 32/61 (51%), Gaps = 6/61 (9%)
Query: 110 IASKIMVSNFVWCLKESLEDLFIIEGCKIAFFDKLEWLH--LFYKQEHLKEDLKESCLII 167
+ K +V N + C+++S + +F++ F + EW H L++ +L + S ++I
Sbjct: 50 VPGKSIVENIITCIEKSYKSIFVLS----PNFVQSEWCHYELYFAHHNLFHEGSNSLILI 105
Query: 168 L 168
L
Sbjct: 106 L 106
>pdb|1HNG|A Chain A, Cd2 (Rat)
pdb|1HNG|B Chain B, Cd2 (Rat)
Length = 176
Score = 27.3 bits (59), Expect = 2.5
Identities = 31/157 (19%), Positives = 62/157 (38%), Gaps = 22/157 (14%)
Query: 36 QKGSLFVAKDHTLIPKALELGAYGILYTGEYPVSDRDVAWIKLKDIEHSLNHLFKFCLLN 95
++GS VA+ + L+ GA+ IL G+ +K+K++ + + + +
Sbjct: 33 ERGSTLVAEFKRKMKPFLKSGAFEILANGD----------LKIKNLTRDDSGTYNVTVYS 82
Query: 96 ERVVGALLSPIELEIASKIMVSNFVWCLKESLEDLFIIEGCKIAFFDKLEWLHLFYKQEH 155
L ++L I + W + ++EG + L L+ +EH
Sbjct: 83 TNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVE-------LKLYQGKEH 135
Query: 156 LKEDLKESCLII----LNQSFFCSALVYEKQEYEFKM 188
L+ L++ + L F C A+ QE E ++
Sbjct: 136 LR-SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEV 171
>pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IQ8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IT7|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT7|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
pdb|1IT8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
Length = 582
Score = 26.9 bits (58), Expect = 3.3
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 39 SLFVAKDHTLIPKALELGAYGIL-YTGEYPVSDRDVAWIKLKDIEHSLNHLFKF 91
S + KD L KALELG + +L Y G V +K IE S + +F
Sbjct: 64 SYIIYKDEELRRKALELGIHRMLDYNGIIEVDSGSFQLMKYGSIEVSNREIIEF 117
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.140 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,859,627
Number of Sequences: 13198
Number of extensions: 72995
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 3
length of query: 335
length of database: 2,899,336
effective HSP length: 89
effective length of query: 246
effective length of database: 1,724,714
effective search space: 424279644
effective search space used: 424279644
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)