BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645047|ref|NP_207217.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(261 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Met... 42 9e-05
pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core... 31 0.13
pdb|1JB7|B Chain B, Dna G-Quartets In A 1.86 A Resolution S... 27 1.8
pdb|1KFD| Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7... 26 5.3
pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment) (E.C... 26 5.3
pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Su... 26 5.3
pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna... 26 5.3
pdb|1KBZ|A Chain A, Crystal Structure Of Apo-Dtdp-6-Deoxy-L... 25 9.1
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 41.6 bits (96), Expect = 9e-05
Identities = 27/84 (32%), Positives = 42/84 (49%), Gaps = 6/84 (7%)
Query: 47 LVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVK--KQFEFLAPFFDKE 104
+++N KDK+V DVGC G +HG K ++G D +++ K+ L F D
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSD-- 87
Query: 105 KKIIYESLGVEDLHEKYPNAFDVI 128
KI +ED+H +P D+I
Sbjct: 88 -KITLLRGKLEDVHLPFPKV-DII 109
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 31.2 bits (69), Expect = 0.13
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 34/163 (20%)
Query: 47 LVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKK 106
+ +N KDKVV DVGC G + G K ++ D + +
Sbjct: 37 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVD------------------QSE 78
Query: 107 IIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDS 166
I+Y+++ + L++ ++ G + P+E + I E + L+ +S
Sbjct: 79 ILYQAMDIIRLNKLEDT---IVLIKGKIEEVSLPVEKVDV------IISEWMGYFLLFES 129
Query: 167 PLDIALCPKKTY-AKMKNVY------FIPSVSALKGWCERVGF 202
LD L K Y AK +VY + +VS + +R+ F
Sbjct: 130 MLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIAF 172
>pdb|1JB7|B Chain B, Dna G-Quartets In A 1.86 A Resolution Structure Of An
Oxytricha Nova Telomeric Protein-Dna Complex
pdb|1OTC|B Chain B, The O. Nova Telomere End Binding Protein Complexed With
Single Strand Dna
Length = 260
Score = 27.3 bits (59), Expect = 1.8
Identities = 14/38 (36%), Positives = 19/38 (49%), Gaps = 8/38 (21%)
Query: 86 PGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPN 123
P LV + F+AP+F KE V + H K+PN
Sbjct: 48 PHFLVTDGYFFVAPYFTKE--------AVNEFHAKFPN 77
>pdb|1KFD| Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7) Complexed With
Dctp
pdb|1DPI| DNA Polymerase I (Klenow Fragment) (E.C.2.7.7.7) - dCMP Complex
Length = 605
Score = 25.8 bits (55), Expect = 5.3
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 70 LFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIF 129
L +L ++ V DP VL E + EKK +E G E ++F
Sbjct: 210 LVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA-HEIAGEEFNLSSTKQLQTILF 268
Query: 130 CLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVY 185
K ++ LK E VL+ L +D PL + + AK+K+ Y
Sbjct: 269 -------EKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTY 317
>pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7) Mutant
With Asp 355 Replaced By Ala (D355a) Complexed With Dna
Length = 605
Score = 25.8 bits (55), Expect = 5.3
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 70 LFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIF 129
L +L ++ V DP VL E + EKK +E G E ++F
Sbjct: 210 LVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA-HEIAGEEFNLSSTKQLQTILF 268
Query: 130 CLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVY 185
K ++ LK E VL+ L +D PL + + AK+K+ Y
Sbjct: 269 -------EKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTY 317
>pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
Manganese
pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
Only
pdb|1KFS|A Chain A, All-Oxygen Dna Complexed To The 3'-5' Exonuclease Of Dna
Polymerase I From E. Coli
pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Short Dna Fragment Carrying 2'-0-
Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
pdb|1KRP|A Chain A, Rp Isomer Phosphorothioate Dna Complexed To The 3'-5'
Exonuclease Of Dna Polymerase I From E. Coli
pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
And Europium (Iii) Ion
pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
pdb|1KSP|A Chain A, Sp Isomer Phosphorothioate Dna Complexed To The 3'-5'
Exonuclease Of Dna Polymerase I From E. Coli
pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
Manganese
pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna Tetramer Carrying
2'-O-(3-Aminopropyl)- Rna Modification
5'-D(Tt)-Ap(U)-D(T)-3'
Length = 605
Score = 25.8 bits (55), Expect = 5.3
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 70 LFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIF 129
L +L ++ V DP VL E + EKK +E G E ++F
Sbjct: 210 LVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA-HEIAGEEFNLSSTKQLQTILF 268
Query: 130 CLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVY 185
K ++ LK E VL+ L +D PL + + AK+K+ Y
Sbjct: 269 -------EKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTY 317
>pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna
Length = 605
Score = 25.8 bits (55), Expect = 5.3
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 70 LFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIF 129
L +L ++ V DP VL E + EKK +E G E ++F
Sbjct: 210 LVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA-HEIAGEEFNLSSTKQLQTILF 268
Query: 130 CLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAKMKNVY 185
K ++ LK E VL+ L +D PL + + AK+K+ Y
Sbjct: 269 -------EKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTY 317
>pdb|1KBZ|A Chain A, Crystal Structure Of Apo-Dtdp-6-Deoxy-L-Lyxo-4-Hexulose
Reductase (Rmld) From Salmonella Enterica Serovar
Typhimurium
pdb|1KC1|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-L-Lyxo-4-Hexulose
Reductase (Rmld) In Complex With Nadph
pdb|1KC3|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-L-Lyxo-4-Hexulose
Reductase (Rmld) In Complex With Nadph And
Dtdp-L-Rhamnose
pdb|1N2S|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-L-Lyxo-4-Hexulose
Reductase (Rmld) In Complex With Nadh
Length = 299
Score = 25.0 bits (53), Expect = 9.1
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 4 CNDKSNPKTLLEEIMALRP 22
C D SNPK + E + LRP
Sbjct: 37 CGDFSNPKGVAETVRKLRP 55
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,637,528
Number of Sequences: 13198
Number of extensions: 71443
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 8
length of query: 261
length of database: 2,899,336
effective HSP length: 86
effective length of query: 175
effective length of database: 1,764,308
effective search space: 308753900
effective search space used: 308753900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)