BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645048|ref|NP_207218.1| hypothetical protein
[Helicobacter pylori 26695]
(142 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 27 0.69
pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Ki... 25 3.4
pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase... 25 4.5
pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase F... 25 4.5
pdb|2ABK| Refinement Of The Native Structure Of Endonucle... 25 4.5
pdb|1AYE| Human Procarboxypeptidase A2 24 7.6
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 27.3 bits (59), Expect = 0.69
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 48 EENFVHAGFVLIACNYAALCALNKRHSVVVSNNINFYAPLELNQ 91
+EN H F++I N + A + H V + N ++ P+E+ +
Sbjct: 267 KENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 25.0 bits (53), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 2/32 (6%)
Query: 48 EENFVHAGFV--LIACNYAALCALNKRHSVVV 77
EE F H V L+A + AL NK H+V V
Sbjct: 224 EEEFAHLAKVHNLVAADKTALSTANKEHAVEV 255
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 24.6 bits (52), Expect = 4.5
Identities = 14/32 (43%), Positives = 16/32 (49%), Gaps = 2/32 (6%)
Query: 48 EENFVHAGFV--LIACNYAALCALNKRHSVVV 77
EE F H V L+A AL NK H+V V
Sbjct: 224 EEEFAHLAKVHNLVAAEKVALSVANKEHAVEV 255
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 24.6 bits (52), Expect = 4.5
Identities = 14/32 (43%), Positives = 16/32 (49%), Gaps = 2/32 (6%)
Query: 48 EENFVHAGFV--LIACNYAALCALNKRHSVVV 77
EE F H V L+A AL NK H+V V
Sbjct: 224 EEEFAHLAKVHNLVAAEKTALSTANKEHAVEV 255
>pdb|2ABK| Refinement Of The Native Structure Of Endonuclease Iii To A
Resolution Of 1.85 Angstrom
Length = 211
Score = 24.6 bits (52), Expect = 4.5
Identities = 12/34 (35%), Positives = 17/34 (49%)
Query: 78 SNNINFYAPLELNQEALIKAQVIQDGVKKAEIKI 111
+ +NF +P EL L+ AQ V KA K+
Sbjct: 21 TTELNFSSPFELLIAVLLSAQATDVSVNKATAKL 54
>pdb|1AYE| Human Procarboxypeptidase A2
Length = 401
Score = 23.9 bits (50), Expect = 7.6
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 6 VRVDYDSLETCKNFKPSVGTELIVLEKDIAHARFKGNESMVYEENFVHAG 55
VRV + +++ K F S G ++ +D+ K NE M++ +G
Sbjct: 49 VRVPFVNVQAVKVFLESQGIAYSIMIEDVQVLLDKENEEMLFNRRRERSG 98
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.137 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 746,332
Number of Sequences: 13198
Number of extensions: 25789
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 2,899,336
effective HSP length: 79
effective length of query: 63
effective length of database: 1,856,694
effective search space: 116971722
effective search space used: 116971722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)