BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645050|ref|NP_207220.1| arginine decarboxylase
(speA) [Helicobacter pylori 26695]
(615 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of T... 32 0.27
pdb|1AMX| Collagen-Binding Domain From A Staphylococcus A... 28 3.0
pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase... 28 3.0
pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant... 28 3.0
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Comp... 28 3.0
pdb|1ELJ|A Chain A, The Crystal Structure Of Liganded Malto... 28 3.9
pdb|3EIP|A Chain A, Crystal Structure Of Colicin E3 Immunit... 28 3.9
pdb|1E44|A Chain A, Ribonuclease Domain Of Colicin E3 In Co... 28 3.9
pdb|1BD2|D Chain D, Complex Between Human T-Cell Receptor B... 28 3.9
pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosom... 27 6.7
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei... 27 6.7
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 27 8.7
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 31.6 bits (70), Expect = 0.27
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 348 YNEKSLKIKENNNPPLIDEMLDLLANINEKNAIEYLHDSFDHTESLFTLFD-LGYIDLID 406
Y K +K+K + L+ + + +L NI I +LH+SF+ E L +F+ + +D+ +
Sbjct: 33 YMAKFVKVK-GTDQVLVKKEISIL-NIARHRNILHLHESFESMEELVMIFEFISGLDIFE 90
Query: 407 RSNT 410
R NT
Sbjct: 91 RINT 94
>pdb|1AMX| Collagen-Binding Domain From A Staphylococcus Aureus Adhesin
Length = 180
Score = 28.1 bits (61), Expect = 3.0
Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 5/63 (7%)
Query: 532 NLFTHPTEF---SVVFDEKGDYEVEDICEAQTILDVLDDLDYDTKEIERLLKQKIEDNNQ 588
N+ H +E SV + + GD ED + L++ ++ Y +K+I +K +I+ Q
Sbjct: 21 NVTVHKSEAGTSSVFYYKTGDMLPEDTTHVRWFLNINNEKSYVSKDI--TIKDQIQGGQQ 78
Query: 589 LDM 591
LD+
Sbjct: 79 LDL 81
>pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase Large Domain
pdb|1QHM|B Chain B, Escherichia Coli Pyruvate Formate Lyase Large Domain
Length = 624
Score = 28.1 bits (61), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Query: 364 IDEMLDLLAN--INEKNAIEYLHDSFDHTESLFTLFD 398
+D +D LA I N I Y+HD + + SL L D
Sbjct: 479 MDHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHD 515
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 28.1 bits (61), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Query: 364 IDEMLDLLAN--INEKNAIEYLHDSFDHTESLFTLFD 398
+D +D LA I N I Y+HD + + SL L D
Sbjct: 479 MDHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHD 515
>pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
Length = 759
Score = 28.1 bits (61), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Query: 364 IDEMLDLLAN--INEKNAIEYLHDSFDHTESLFTLFD 398
+D +D LA I N I Y+HD + + SL L D
Sbjct: 479 MDHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHD 515
>pdb|1ELJ|A Chain A, The Crystal Structure Of Liganded Maltodextrin-Binding
Protein From Pyrococcus Furiosus
Length = 381
Score = 27.7 bits (60), Expect = 3.9
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 3/56 (5%)
Query: 18 KIEKGLVKVCHGKNPSLLEIVQSVRDKGYRGPLLVRFPHLVQKQIKSLFDAFSSAI 73
KIE+G V + H P+ LE+ QS+ ++ L +V +Q +L DA +AI
Sbjct: 2 KIEEGKVVIWHAMQPNELEVFQSLAEEYM---ALXPEVEIVFEQKPNLEDALKAAI 54
>pdb|3EIP|A Chain A, Crystal Structure Of Colicin E3 Immunity Protein: An
Inhibitor To A Ribosome-Inactivating Rnase
pdb|3EIP|B Chain B, Crystal Structure Of Colicin E3 Immunity Protein: An
Inhibitor To A Ribosome-Inactivating Rnase
pdb|1JCH|B Chain B, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
pdb|1JCH|D Chain D, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
Length = 84
Score = 27.7 bits (60), Expect = 3.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 499 KPLFLHDIDIDEEEYFLAF 517
+P F H IDI + EYF++F
Sbjct: 59 QPYFNHQIDISDNEYFVSF 77
>pdb|1E44|A Chain A, Ribonuclease Domain Of Colicin E3 In Complex With Its
Immunity Protein
Length = 85
Score = 27.7 bits (60), Expect = 3.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 499 KPLFLHDIDIDEEEYFLAF 517
+P F H IDI + EYF++F
Sbjct: 60 QPYFNHQIDISDNEYFVSF 78
>pdb|1BD2|D Chain D, Complex Between Human T-Cell Receptor B7, Viral Peptide
(Tax) And Mhc Class I Molecule Hla-A 0201
Length = 204
Score = 27.7 bits (60), Expect = 3.9
Identities = 39/153 (25%), Positives = 63/153 (40%), Gaps = 20/153 (13%)
Query: 427 VKDHNDILRIQEQVQERYLLNCSFFQSLPDYWGLRQNFPVMPLNKLDEKPTRSASLWDI- 485
VK ++ L +QE +LNC + S+ DY+ + +P E PT S+ I
Sbjct: 3 VKQNSPSLSVQEG--RISILNCDYTNSMFDYFLWYKKYPA-------EGPTFLISISSIK 53
Query: 486 TCDSDGEIAF---DSTKPLFLHDIDI---DEEEYFLAFFLVGAYQEVLGMKHNLFTHPTE 539
++DG S K L LH + D YF A + GA + V G L +P
Sbjct: 54 DKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCA-AMEGAQKLVFGQGTRLTINP-- 110
Query: 540 FSVVFDEKGDYEVEDICEAQTILDVLDDLDYDT 572
++ + Y++ D + + + D D T
Sbjct: 111 -NIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQT 142
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 26.9 bits (58), Expect = 6.7
Identities = 13/45 (28%), Positives = 28/45 (61%), Gaps = 1/45 (2%)
Query: 234 IHFHIGSQISDISPLKKALREAGNLYAELRKMGAKNLNSVNIGGG 278
+ FH+GS +D S +A+ ++ ++ ++G N++ ++IGGG
Sbjct: 194 VSFHVGSGSTDASTFAQAISDSRFVFDMGTELGF-NMHILDIGGG 237
>pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
Length = 425
Score = 26.9 bits (58), Expect = 6.7
Identities = 13/45 (28%), Positives = 28/45 (61%), Gaps = 1/45 (2%)
Query: 234 IHFHIGSQISDISPLKKALREAGNLYAELRKMGAKNLNSVNIGGG 278
+ FH+GS +D S +A+ ++ ++ ++G N++ ++IGGG
Sbjct: 194 VSFHVGSGSTDASTFAQAISDSRFVFDMGTELGF-NMHILDIGGG 237
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 26.6 bits (57), Expect = 8.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 531 HNLFTHPTEFSVVFDEKGDYEVEDI 555
+ L HPT+FSV F E+ EV+++
Sbjct: 192 NQLKEHPTDFSVEFLEQNSNEVQEV 216
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,528,092
Number of Sequences: 13198
Number of extensions: 147766
Number of successful extensions: 413
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 14
length of query: 615
length of database: 2,899,336
effective HSP length: 94
effective length of query: 521
effective length of database: 1,658,724
effective search space: 864195204
effective search space used: 864195204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)