BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645056|ref|NP_207226.1| phage/colicin/tellurite
resistance cluster terY protein [Helicobacter pylori 26695]
(185 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1UOK| Crystal Structure Of B. Cereus Oligo-1,6-Glucos... 33 0.020
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex >... 28 0.49
pdb|2SLI| Leech Intramolecular Trans-Sialidase Complexed ... 28 0.49
pdb|1SCH|A Chain A, Peanut Peroxidase >gi|1633131|pdb|1SCH|... 26 3.2
pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobul... 25 4.1
pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima 25 5.4
pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga M... 25 5.4
pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Intera... 25 7.0
pdb|1QQG|B Chain B, Crystal Structure Of The Ph-Ptb Targeti... 24 9.2
pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken >gi... 24 9.2
pdb|1CRM| Carbonic Anhydrase I (Carbonate Dehydratase I, ... 24 9.2
pdb|2CAB| Carbonic Anhydrase Form B (Carbonate Dehydratas... 24 9.2
pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inh... 24 9.2
>pdb|1UOK| Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 33.1 bits (74), Expect = 0.020
Identities = 22/77 (28%), Positives = 35/77 (44%), Gaps = 12/77 (15%)
Query: 94 KPYSILVSDGEPNNDKWQEPLFNFHHDGRSAKSVCWSIFIGDRNDNPQVNKDFGKDGVFY 153
KP S+L + N KWQ+ L H G W+ + +D P+V FG DG++
Sbjct: 297 KPCSLLTL--KENLTKWQKAL---EHTG-------WNSLYWNNHDQPRVVSRFGNDGMYR 344
Query: 154 TDDVEKLVKLFEIMTQT 170
+ + L + +M T
Sbjct: 345 IESAKMLATVLHMMKGT 361
>pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 28.5 bits (62), Expect = 0.49
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 131 IFIGDRNDNPQVNKDFGKDGVFYTDDVEKLVKLFEIMTQTISKGSASIKKLNWIP 185
+ +G++ D P+ + E+L ++F + QT KGS S+K+LN P
Sbjct: 130 LILGNKIDRPEAISE------------ERLREMFGLYGQTTGKGSVSLKELNARP 172
>pdb|2SLI| Leech Intramolecular Trans-Sialidase Complexed With
2,7-Anhydro-Neu5ac, The Reaction Product
pdb|3SLI| Leech Intramolecular Trans-Sialidase Complexed With
2,7-Anhydro-Neu5ac Prepared By Soaking With
3'-Sialyllactose
pdb|4SLI| Leech Intramolecular Trans-Sialidase Complexed With
2-Propenyl-Neu5ac, An Inactive Substrate Analogue
pdb|1SLI| Leech Intramolecular Trans-Sialidase Complexed With Dana
pdb|1SLL| Sialidase L From Leech Macrobdella Decora
Length = 679
Score = 28.5 bits (62), Expect = 0.49
Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 18/154 (11%)
Query: 30 KELFSKMAIVTFGGN----GAVLHTDFGDIKNINFKPLSTSGGTPLDQAFRLAKDLIEDK 85
+EL + T+G N G V +++ I ++ L+ S GT + A + K
Sbjct: 185 EELIQATGVTTYGENIFYAGDVTESNYFRIPSL----LTLSTGTVISAADARYGGTHDSK 240
Query: 86 DTFPTKFYKPYSILVSDGEPNNDKWQEPLFNFHHDGRSAKSVCWSIFIGDRNDNPQVNKD 145
F K +DG + W EP D AK++ W +N Q +
Sbjct: 241 SKINIAFAKS-----TDG---GNTWSEPTLPLKFDDYIAKNIDWPRDSVGKNVQIQGSAS 292
Query: 146 FGKDGVFYTDDVEKLVKLF-EIMTQTISKGSASI 178
+ D V D + K + LF ++M I +AS+
Sbjct: 293 Y-IDPVLLEDKLTKRIFLFADLMPAGIGSSNASV 325
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 25.8 bits (55), Expect = 3.2
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 2/58 (3%)
Query: 13 LNLCIQKMIETLKQEAKKELFSKMAIVTFGGNGAVLHTDFGD--IKNINFKPLSTSGG 68
+NL +K + Q+ + + + + N A +TDFG+ IK N PL+ + G
Sbjct: 227 INLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSG 284
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 25.4 bits (54), Expect = 4.1
Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 4/38 (10%)
Query: 84 DKDTFPTKFYKPYSILVSDGEPNNDKWQEPLFNFHHDG 121
D D FP +P DGEP + E ++F++DG
Sbjct: 36 DADGFP----EPTMTWTKDGEPIEQEDNEEKYSFNYDG 69
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
Length = 419
Score = 25.0 bits (53), Expect = 5.4
Identities = 11/46 (23%), Positives = 24/46 (51%)
Query: 11 EVLNLCIQKMIETLKQEAKKELFSKMAIVTFGGNGAVLHTDFGDIK 56
E +N ++++ E L++ + + + V+F V+ DFG+ K
Sbjct: 58 ESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEK 103
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 25.0 bits (53), Expect = 5.4
Identities = 11/46 (23%), Positives = 24/46 (51%)
Query: 11 EVLNLCIQKMIETLKQEAKKELFSKMAIVTFGGNGAVLHTDFGDIK 56
E +N ++++ E L++ + + + V+F V+ DFG+ K
Sbjct: 58 ESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEK 103
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 24.6 bits (52), Expect = 7.0
Identities = 22/92 (23%), Positives = 35/92 (37%), Gaps = 3/92 (3%)
Query: 29 KKELFSKMAIVTFGGN-GAVLHTDFGDIKNINFKPLSTSGGTPLDQAFRLAKDLIEDKDT 87
+ +LF + G + G L + + K L SGG L K++ D
Sbjct: 90 RSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGG--LSSVPLTVKEMNRLIDE 147
Query: 88 FPTKFYKPYSILVSDGEPNNDKWQEPLFNFHH 119
P K+ S G N ++QE + F+H
Sbjct: 148 LPAKYRDAIKKYGSSGSYENPEYQEAVNYFYH 179
>pdb|1QQG|B Chain B, Crystal Structure Of The Ph-Ptb Targeting Region Of Irs-1
pdb|1QQG|A Chain A, Crystal Structure Of The Ph-Ptb Targeting Region Of Irs-1
Length = 264
Score = 24.3 bits (51), Expect = 9.2
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 70 PLDQAFRLAKDLIEDKDTFPTKFYK--PYSILVSDGEPNNDKWQEPLFNF------HHDG 121
PL+ F + K + K+ Y + + +D E D W + L HHDG
Sbjct: 62 PLESCFNINKRA-DSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAKGHHDG 120
Query: 122 RSA 124
+A
Sbjct: 121 AAA 123
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
Length = 446
Score = 24.3 bits (51), Expect = 9.2
Identities = 10/47 (21%), Positives = 25/47 (52%)
Query: 73 QAFRLAKDLIEDKDTFPTKFYKPYSILVSDGEPNNDKWQEPLFNFHH 119
+A L D++++ ++ K ++V + + N+ +E +FN+ H
Sbjct: 108 KAVELLADIVQNCSLEDSQIEKERDVIVRELQENDTSMREVVFNYLH 154
>pdb|1CRM| Carbonic Anhydrase I (Carbonate Dehydratase I, Hca I)
(E.C.4.2.1.1) Complexed With Mercuric Chloride
Length = 260
Score = 24.3 bits (51), Expect = 9.2
Identities = 22/89 (24%), Positives = 38/89 (41%), Gaps = 7/89 (7%)
Query: 31 ELFSKMAIVTFGGNGAVLHTDFGDIKN-INFKPLSTSGGTPLDQAFRLAKDLIEDKDTFP 89
E +SK+ + G N + + + K+ + KP+S S AK++I +F
Sbjct: 14 EQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPAT------AKEIINVGHSFH 67
Query: 90 TKFYKPYSILVSDGEPNNDKWQEPLFNFH 118
F V G P +D ++ F+FH
Sbjct: 68 VNFEDNQDRSVLKGGPFSDSYRLFQFHFH 96
>pdb|2CAB| Carbonic Anhydrase Form B (Carbonate Dehydratase) (E.C.4.2.1.1)
Length = 261
Score = 24.3 bits (51), Expect = 9.2
Identities = 22/89 (24%), Positives = 38/89 (41%), Gaps = 7/89 (7%)
Query: 31 ELFSKMAIVTFGGNGAVLHTDFGDIKN-INFKPLSTSGGTPLDQAFRLAKDLIEDKDTFP 89
E +SK+ + G N + + + K+ + KP+S S AK++I +F
Sbjct: 15 EQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPAT------AKEIINVGHSFH 68
Query: 90 TKFYKPYSILVSDGEPNNDKWQEPLFNFH 118
F V G P +D ++ F+FH
Sbjct: 69 VNFEDNQDRSVLKGGPFSDSYRLFQFHFH 97
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 24.3 bits (51), Expect = 9.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 101 SDGEPNNDKWQEPLFNFHHDGRSAKSVCWSIFIGDR 136
SD E WQ LF H + +C + I DR
Sbjct: 5 SDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDR 40
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,189,939
Number of Sequences: 13198
Number of extensions: 54296
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 13
length of query: 185
length of database: 2,899,336
effective HSP length: 83
effective length of query: 102
effective length of database: 1,803,902
effective search space: 183998004
effective search space used: 183998004
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)