BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645058|ref|NP_207228.1| hypothetical protein
[Helicobacter pylori 26695]
         (55 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1I4N|A  Chain A, Crystal Structure Of Indoleglycerol Pho...    23  8.7
pdb|1J5T|A  Chain A, Crystal Structure Of Indole-3-Glycerol ...    23  8.7

>pdb|1I4N|A Chain A, Crystal Structure Of Indoleglycerol Phosphate Synthase
           From Thermotoga Maritima
 pdb|1I4N|B Chain B, Crystal Structure Of Indoleglycerol Phosphate Synthase
           From Thermotoga Maritima
          Length = 251

 Score = 22.7 bits (47), Expect = 8.7
 Identities = 11/44 (25%), Positives = 28/44 (63%), Gaps = 4/44 (9%)

Query: 2   LLSDGHFTEEIQVKSSVAFGADANMIKLKKISS----KVFDSAE 41
           +L+   + + +QVK + + GADA +I  + +++    +++++AE
Sbjct: 104 ILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAE 147



>pdb|1J5T|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
           (Tm0140) From Thermotoga Maritima At 3.0 A Resolution
          Length = 242

 Score = 22.7 bits (47), Expect = 8.7
 Identities = 11/44 (25%), Positives = 28/44 (63%), Gaps = 4/44 (9%)

Query: 2   LLSDGHFTEEIQVKSSVAFGADANMIKLKKISS----KVFDSAE 41
           +L+   + + +QVK + + GADA +I  + +++    +++++AE
Sbjct: 95  ILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAE 138



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.321    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 247,562
Number of Sequences: 13198
Number of extensions: 5346
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 55
length of database: 2,899,336
effective HSP length: 31
effective length of query: 24
effective length of database: 2,490,198
effective search space: 59764752
effective search space used: 59764752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)