BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645061|ref|NP_207231.1| hypothetical protein
[Helicobacter pylori 26695]
(147 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 >gi|241587... 27 0.73
pdb|1BU7|A Chain A, Cryogenic Structure Of Cytochrome P450b... 27 1.2
pdb|1JPZ|B Chain B, Crystal Structure Of A Complex Of The H... 27 1.2
pdb|1JME|B Chain B, Crystal Structure Of Phe393his Cytochro... 27 1.2
pdb|2HPD|A Chain A, Cytochrome P450 (Bm-3) (E.C.1.14.14.1) ... 27 1.2
pdb|1D6T|A Chain A, Rnase P Protein From Staphylococcus Aureus 27 1.2
pdb|1FAH|A Chain A, Structure Of Cytochrome P450 >gi|194238... 27 1.2
pdb|1BVY|A Chain A, Complex Of The Heme And Fmn-Binding Dom... 27 1.2
pdb|1UAA|B Chain B, Structure Of The Rep Helicase-Single St... 26 1.6
pdb|1NFP| Luxf Gene Product (Nonfluorescent Flavoprotein)... 26 2.1
pdb|1EGN|A Chain A, Cellobiohydrolase Cel7a (E223s, A224h, ... 26 2.1
pdb|6CEL| Cbh1 (E212q) Cellopentaose Complex >gi|2780931|... 25 2.8
pdb|7CEL| Cbh1 (E217q) In Complex With Cellohexaose And C... 25 2.8
pdb|4CEL|A Chain A, Active-Site Mutant D214n Determined At ... 25 2.8
pdb|1CEL|A Chain A, 1,4-Beta-D-Glucan Cellobiohydrolase I (... 25 2.8
pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sul... 24 6.2
>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2
pdb|1KWP|B Chain B, Crystal Structure Of Mapkap2
Length = 400
Score = 27.3 bits (59), Expect = 0.73
Identities = 18/67 (26%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
Query: 53 LVATSYYQKSEVFYFVSNFTDPIFLPTTLFKGIEVVKSEWEFAEIANNILIFHHDIQQEK 112
L+ E+F + + D F T + E++KS E + ++I I H D++ E
Sbjct: 135 LIVMECLDGGELFSRIQDRGDQAF---TEREASEIMKSIGEAIQYLHSINIAHRDVKPEN 191
Query: 113 ILINNKR 119
+L +KR
Sbjct: 192 LLYTSKR 198
>pdb|1BU7|A Chain A, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|1BU7|B Chain B, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|2BMH|A Chain A, Cytochrome P450 (Bm-3) (E.C.1.14.14.1) (Hemoprotein
Domain)
pdb|2BMH|B Chain B, Cytochrome P450 (Bm-3) (E.C.1.14.14.1) (Hemoprotein
Domain)
Length = 455
Score = 26.6 bits (57), Expect = 1.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 121 DHYRIEIDLEKELTISYNGFLIKVQ 145
DH E+D+++ LT+ GF++K +
Sbjct: 425 DHTNYELDIKETLTLKPEGFVVKAK 449
>pdb|1JPZ|B Chain B, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1JPZ|A Chain A, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
Length = 473
Score = 26.6 bits (57), Expect = 1.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 121 DHYRIEIDLEKELTISYNGFLIKVQ 145
DH E+D+++ LT+ GF++K +
Sbjct: 428 DHTNYELDIKETLTLKPEGFVVKAK 452
>pdb|1JME|B Chain B, Crystal Structure Of Phe393his Cytochrome P450 Bm3
pdb|1JME|A Chain A, Crystal Structure Of Phe393his Cytochrome P450 Bm3
Length = 455
Score = 26.6 bits (57), Expect = 1.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 121 DHYRIEIDLEKELTISYNGFLIKVQ 145
DH E+D+++ LT+ GF++K +
Sbjct: 425 DHTNYELDIKETLTLKPEGFVVKAK 449
>pdb|2HPD|A Chain A, Cytochrome P450 (Bm-3) (E.C.1.14.14.1) (Hemoprotein
Domain) (Fatty Acid Monooxygenase)
pdb|2HPD|B Chain B, Cytochrome P450 (Bm-3) (E.C.1.14.14.1) (Hemoprotein
Domain) (Fatty Acid Monooxygenase)
pdb|1FAG|A Chain A, Structure Of Cytochrome P450
pdb|1FAG|B Chain B, Structure Of Cytochrome P450
pdb|1FAG|C Chain C, Structure Of Cytochrome P450
pdb|1FAG|D Chain D, Structure Of Cytochrome P450
Length = 471
Score = 26.6 bits (57), Expect = 1.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 121 DHYRIEIDLEKELTISYNGFLIKVQ 145
DH E+D+++ LT+ GF++K +
Sbjct: 425 DHTNYELDIKETLTLKPEGFVVKAK 449
>pdb|1D6T|A Chain A, Rnase P Protein From Staphylococcus Aureus
Length = 117
Score = 26.6 bits (57), Expect = 1.2
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 106 HDIQQEKILI---NNKRLDHYRIEIDLEKEL 133
H + + ++ NNK +DH+R+ I + K+L
Sbjct: 23 HSVANRQFVVYTCNNKEIDHFRLGISVSKKL 53
>pdb|1FAH|A Chain A, Structure Of Cytochrome P450
pdb|1FAH|B Chain B, Structure Of Cytochrome P450
Length = 471
Score = 26.6 bits (57), Expect = 1.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 121 DHYRIEIDLEKELTISYNGFLIKVQ 145
DH E+D+++ LT+ GF++K +
Sbjct: 425 DHTNYELDIKETLTLKPEGFVVKAK 449
>pdb|1BVY|A Chain A, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
pdb|1BVY|B Chain B, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 458
Score = 26.6 bits (57), Expect = 1.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 121 DHYRIEIDLEKELTISYNGFLIKVQ 145
DH E+D+++ LT+ GF++K +
Sbjct: 425 DHTNYELDIKETLTLKPEGFVVKAK 449
>pdb|1UAA|B Chain B, Structure Of The Rep Helicase-Single Stranded Dna Complex
At 3.0 Angstroms Resolution
pdb|1UAA|A Chain A, Structure Of The Rep Helicase-Single Stranded Dna Complex
At 3.0 Angstroms Resolution
Length = 673
Score = 26.2 bits (56), Expect = 1.6
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 46 DAKKPVRLVATSYYQKSEVFYF-------------VSNFTDPIFLPTTLFKGIEVVKSEW 92
D K P + A++ ++ +F V +F D I LPT L + E V+ W
Sbjct: 145 DLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRW 204
Query: 93 E 93
+
Sbjct: 205 Q 205
>pdb|1NFP| Luxf Gene Product (Nonfluorescent Flavoprotein) Complexed With
Myristic Acid And Fmn
Length = 228
Score = 25.8 bits (55), Expect = 2.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 30 YYDRDYNRECEICPYCDAKKPVRLVATS 57
+ D+ YN E ++ P+ K + ++ATS
Sbjct: 51 HIDKSYNDETKLAPFVSLGKQIHVLATS 78
>pdb|1EGN|A Chain A, Cellobiohydrolase Cel7a (E223s, A224h, L225v, T226a,
D262g) Mutant
Length = 434
Score = 25.8 bits (55), Expect = 2.1
Identities = 15/47 (31%), Positives = 20/47 (41%), Gaps = 2/47 (4%)
Query: 19 QVLECENCSMTYYDRDYNRECEICPYCDAKKPVRLVATSYYQKSEVF 65
++ E + C TY D Y C+ P P RL TS+Y F
Sbjct: 236 EICEGDGCGGTYSDNRYGGTCD--PDGCGWNPYRLGNTSFYGPGSSF 280
>pdb|6CEL| Cbh1 (E212q) Cellopentaose Complex
pdb|5CEL| Cbh1 (E212q) Cellotetraose Complex
pdb|2CEL|A Chain A, Active-Site Mutant E212q Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|2CEL|B Chain B, Active-Site Mutant E212q Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|3CEL| Active-Site Mutant E212q Determined At Ph 6.0 With Cellobiose
Bound In The Active Site
Length = 434
Score = 25.4 bits (54), Expect = 2.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 19 QVLECENCSMTYYDRDYNRECEICPYCDAKKPVRLVATSYYQKSEVF 65
++ E + C TY D Y C+ CD P RL TS+Y F
Sbjct: 236 EICEGDGCGGTYSDNRYGGTCD-PDGCD-WNPYRLGNTSFYGPGSSF 280
>pdb|7CEL| Cbh1 (E217q) In Complex With Cellohexaose And Cellobiose
Length = 434
Score = 25.4 bits (54), Expect = 2.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 19 QVLECENCSMTYYDRDYNRECEICPYCDAKKPVRLVATSYYQKSEVF 65
++ E + C TY D Y C+ CD P RL TS+Y F
Sbjct: 236 EICEGDGCGGTYSDNRYGGTCD-PDGCD-WNPYRLGNTSFYGPGSSF 280
>pdb|4CEL|A Chain A, Active-Site Mutant D214n Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|4CEL|B Chain B, Active-Site Mutant D214n Determined At Ph 6.0 With No
Ligand Bound In The Active Site
Length = 434
Score = 25.4 bits (54), Expect = 2.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 19 QVLECENCSMTYYDRDYNRECEICPYCDAKKPVRLVATSYYQKSEVF 65
++ E + C TY D Y C+ CD P RL TS+Y F
Sbjct: 236 EICEGDGCGGTYSDNRYGGTCD-PDGCD-WNPYRLGNTSFYGPGSSF 280
>pdb|1CEL|A Chain A, 1,4-Beta-D-Glucan Cellobiohydrolase I (Cellulase)
(E.C.3.2.1.91)
pdb|1CEL|B Chain B, 1,4-Beta-D-Glucan Cellobiohydrolase I (Cellulase)
(E.C.3.2.1.91)
pdb|1DY4|A Chain A, Cbh1 In Complex With S-Propranolol
Length = 434
Score = 25.4 bits (54), Expect = 2.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 19 QVLECENCSMTYYDRDYNRECEICPYCDAKKPVRLVATSYYQKSEVF 65
++ E + C TY D Y C+ CD P RL TS+Y F
Sbjct: 236 EICEGDGCGGTYSDNRYGGTCD-PDGCD-WNPYRLGNTSFYGPGSSF 280
>pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
pdb|1HY3|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
Length = 294
Score = 24.3 bits (51), Expect = 6.2
Identities = 20/87 (22%), Positives = 38/87 (42%), Gaps = 16/87 (18%)
Query: 35 YNRECEICPYCDAKKPVRLVATSYYQKSEVFYFVSNFTDPIFLPTTLFKGIEV------- 87
+ ++C+I C K V A S+Y F V+ +P P + K ++
Sbjct: 118 WEKDCKIIYLCRNAKDV---AVSFYY---FFLMVAGHPNPGSFPEFVEKFMQGQVPYGSW 171
Query: 88 ---VKSEWEFAEIANNILIFHHDIQQE 111
VKS WE + + +F+ D++++
Sbjct: 172 YKHVKSWWEKGKSPRVLFLFYEDLKED 198
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 836,263
Number of Sequences: 13198
Number of extensions: 30825
Number of successful extensions: 59
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 16
length of query: 147
length of database: 2,899,336
effective HSP length: 80
effective length of query: 67
effective length of database: 1,843,496
effective search space: 123514232
effective search space used: 123514232
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)