BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644675|ref|NP_206845.1| GDP-D-mannose dehydratase
(rfbD) [Helicobacter pylori 26695]
(381 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase 452 e-128
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose... 73 5e-14
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Co... 69 7e-13
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose... 67 4e-12
pdb|1KVS| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 45 1e-05
pdb|1UDC| Structure Of Udp-Galactose-4-Epimerase Complexe... 44 2e-05
pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galact... 44 3e-05
pdb|1KVR| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 44 3e-05
pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli U... 44 3e-05
pdb|1KVT| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 44 4e-05
pdb|1KVQ| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 44 4e-05
pdb|1KVU| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 43 7e-05
pdb|1A9Y| Udp-Galactose 4-Epimerase Mutant S124aY149F COM... 42 9e-05
pdb|1A9Z| Udp-Galactose 4-Epimerase Mutant S124aY149F COM... 42 1e-04
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epim... 32 0.091
pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accomm... 32 0.16
pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-De... 30 0.35
pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy... 28 1.7
pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidru... 27 3.8
pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia ... 27 5.0
pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Compl... 26 6.6
pdb|1FEP|A Chain A, Ferric Enterobactin Receptor 26 6.6
pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539... 26 6.6
pdb|1QBA| Bacterial Chitobiase, Glycosyl Hydrolase Family... 26 6.6
pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540... 26 6.6
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp 26 8.6
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With Th... 26 8.6
pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp 26 8.6
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp 26 8.6
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With Th... 26 8.6
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 452 bits (1164), Expect = e-128
Identities = 223/371 (60%), Positives = 281/371 (75%), Gaps = 8/371 (2%)
Query: 4 KIALITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLH 63
K+ALITGVTGQDGSYLAE+LL GYEVHG+KRR+SS NT R+DH+Y+D H+ + + F LH
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPK-FHLH 60
Query: 64 YGDMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILG 123
YGD++D+SNL ++ +P E+YNL A SHV VSFE+PEYTA+ D +GTLR+LEA+R LG
Sbjct: 61 YGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG 120
Query: 124 LEKKTRFYQASTSELYGEVLETPQNENTPFNPRSPYAVAKMYAFYITKNYREAYNLFAVN 183
LEKKTRFYQASTSELYG V E PQ E TPF PRSPYAVAK+YA++IT NYRE+Y ++A N
Sbjct: 121 LEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACN 180
Query: 184 GILFNHESRVRGETFVTRKITRAASAIAYNLTDCLYLGNLDAKRDWGHAKDYVKMMHLML 243
GILFNHES RGETFVTRKITRA + IA L CLYLGN+D+ RDWGHAKDYVKM +ML
Sbjct: 181 GILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMML 240
Query: 244 QAPIPQDYVIATGKTTSVRDFVKMSFEFIGINLEFQNTGIKEIGLIKSVDEKRANALKLN 303
Q P+D+VIATG SVR FV+M+ +GI L F+ TG++E G++ SV A
Sbjct: 241 QQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG---- 296
Query: 304 LSHLKKGQIVVRIDERYFRPTEVDLLLGDPTKAEKELDWVREYDLKELVKDMLEYDLKEC 363
+K G +++ +D RYFRP EV+ LLGDPTKA ++L W E L+E+V +M+ DL+
Sbjct: 297 ---VKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAA 353
Query: 364 QKNLYLQDGGY 374
+K+ L+ GY
Sbjct: 354 KKHSLLKSHGY 364
>pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
Length = 361
Score = 73.2 bits (178), Expect = 5e-14
Identities = 62/254 (24%), Positives = 110/254 (42%), Gaps = 27/254 (10%)
Query: 7 LITGVTGQDGSYLAEYLL-NLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYG 65
LITG G GS + +++ N V + + + + N + + E R+ +
Sbjct: 4 LITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISES------NRYNFEHA 57
Query: 66 DMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMR----I 121
D+ DS+ + + +P + +LAA+SHV S P + +GT +LE R
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 122 LGLEKKT--RFYQASTSELYGEVLETPQNEN----------TPFNPRSPYAVAKMYAFYI 169
LG +KK RF+ ST E+YG++ + EN T + P SPY+ +K + ++
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHL 177
Query: 170 TKNYREAYNLFAVNGILFNHESRVRGETFVTRKITRAASAIAYNLTDCLYLGNLDAKRDW 229
+ +R Y L + + S G K+ A G D RDW
Sbjct: 178 VRAWRRTYGL----PTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDW 233
Query: 230 GHAKDYVKMMHLML 243
+ +D+ + +H+++
Sbjct: 234 LYVEDHARALHMVV 247
>pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 69.3 bits (168), Expect = 7e-13
Identities = 64/243 (26%), Positives = 107/243 (43%), Gaps = 19/243 (7%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYE-VHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYG 65
LITG G GS L Y++N + V + + + + N + + + RF
Sbjct: 5 LITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQS------ERFAFEKV 58
Query: 66 DMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMR----I 121
D+ D + L + +P + +LAA+SHV S + P + +GT +LEA R
Sbjct: 59 DICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNA 118
Query: 122 LGLEKKT--RFYQASTSELYGEVLETPQ--NENTPFNPRSPYAVAKMYAFYITKNYREAY 177
L +KK+ RF+ ST E+YG++ T E TP+ P SPY+ +K + ++ + + Y
Sbjct: 119 LTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 178 NLFAVNGILFNHESRVRGETFVTRKITRAASAIAYNLTDCLYLGNLDAKRDWGHAKDYVK 237
L L + S G K+ A GN RDW + +D+ +
Sbjct: 179 GL----PTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHAR 234
Query: 238 MMH 240
++
Sbjct: 235 ALY 237
>pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
Length = 348
Score = 66.6 bits (161), Expect = 4e-12
Identities = 72/289 (24%), Positives = 125/289 (42%), Gaps = 40/289 (13%)
Query: 4 KIALITGVTGQDGSYLAEYLLNLGYEVHG--LKRRSSSINTSRIDHLYEDLHSDHKRRFF 61
K ++TG G GS Y+ N +VH L + + + N + ++ + D R
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGD-------RVE 57
Query: 62 LHYGDMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRI 121
L GD+ D+ + L A K I + AA+SH S P + + IGT +LEA R
Sbjct: 58 LVVGDIADAELVDKLAA--KADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAAR- 114
Query: 122 LGLEKKTRFYQASTSELYGEVLETPQNENTP---------------FNPRSPYAVAKMYA 166
+ RF+ ST E+YG++ P E+ P +NP SPY+ K +
Sbjct: 115 ---KYDIRFHHVSTDEVYGDL---PLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAAS 168
Query: 167 FYITKNYREAYNLFA-VNGILFNHESRVRGETFVTRKITRAASAIAYNLTDCLYLGNLDA 225
I K + ++ + A ++ N+ E F+ R+IT + I L G
Sbjct: 169 DLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKL-----YGEGKN 223
Query: 226 KRDWGHAKDY-VKMMHLMLQAPIPQDYVIATGKTTSVRDFVKMSFEFIG 273
RDW H D+ + ++ + + + Y+I + ++ +++ E +G
Sbjct: 224 VRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMG 272
>pdb|1KVS| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 45.4 bits (106), Expect = 1e-05
Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 17/244 (6%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66
L+TG +G GS+ LL G++V L +S + + + E L H F+ GD
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPVIERLGGKHPT--FVE-GD 58
Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126
+ + + + ++ + + A V S + P + + GTLR++ AMR ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-NPRSPYAVAKMYAFYITKNYREAYNLFAVNGI 185
F +ST+ +YG+ + P E+ P P+SPY +K+ I + ++A +++ +
Sbjct: 118 --NFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 186 -LFN----HESRVRGE--TFVTRKITRAASAIAYNLTDCLYL-GNLDAKRDWGHAKDYVK 237
FN H S GE + + + +A D L + GN D +DY+
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 238 MMHL 241
+M L
Sbjct: 236 VMDL 239
>pdb|1UDC| Structure Of Udp-Galactose-4-Epimerase Complexed With Udp-Mannose
pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 44.3 bits (103), Expect = 2e-05
Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 17/244 (6%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66
L+TG +G GS+ LL G++V L +S + + + E L H F+ GD
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPVIERLGGKHPT--FVE-GD 58
Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126
+ + + + ++ + + A V S + P + + GTLR++ AMR ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-NPRSPYAVAKMYAFYITKNYREAYNLFAVNGI 185
F +S++ +YG+ + P E+ P P+SPY +K+ I + ++A +++ +
Sbjct: 118 --NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 186 -LFN----HESRVRGE--TFVTRKITRAASAIAYNLTDCLYL-GNLDAKRDWGHAKDYVK 237
FN H S GE + + + +A D L + GN D +DY+
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 238 MMHL 241
+M L
Sbjct: 236 VMDL 239
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1UDB| Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4-Fluoro-Alpha-D-Glucose
pdb|1UDA| Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4-Fluoro-Alpha-D-Galactose
pdb|1NAH| Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1XEL| Udp-Galactose 4-Epimerase From Escherichia Coli
pdb|1NAI| Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
Length = 338
Score = 43.9 bits (102), Expect = 3e-05
Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 17/244 (6%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66
L+TG +G GS+ LL G++V L +S + + + E L H F+ GD
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPVIERLGGKHPT--FVE-GD 58
Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126
+ + + + ++ + + A V S + P + + GTLR++ AMR ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-NPRSPYAVAKMYAFYITKNYREAYNLFAVNGI 185
F +S++ +YG+ + P E+ P P+SPY +K+ I + ++A +++ +
Sbjct: 118 --NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 186 -LFN----HESRVRGE--TFVTRKITRAASAIAYNLTDCLYL-GNLDAKRDWGHAKDYVK 237
FN H S GE + + + +A D L + GN D +DY+
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 238 MMHL 241
+M L
Sbjct: 236 VMDL 239
>pdb|1KVR| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 43.9 bits (102), Expect = 3e-05
Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 17/244 (6%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66
L+TG +G GS+ LL G++V L +S + + + E L H F+ GD
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPVIERLGGKHPT--FVE-GD 58
Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126
+ + + + ++ + + A V S + P + + GTLR++ AMR ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-NPRSPYAVAKMYAFYITKNYREAYNLFAVNGI 185
F +S + +YG+ + P E+ P P+SPY +K+ I + ++A +++ +
Sbjct: 118 --NFIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 186 -LFN----HESRVRGE--TFVTRKITRAASAIAYNLTDCLYL-GNLDAKRDWGHAKDYVK 237
FN H S GE + + + +A D L + GN D +DY+
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 238 MMHL 241
+M L
Sbjct: 236 VMDL 239
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-
Epimerase Mutant Y299c Complexed With Udp-N-
Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 43.9 bits (102), Expect = 3e-05
Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 17/244 (6%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66
L+TG +G GS+ LL G++V L +S + + + E L H F+ GD
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPVIERLGGKHPT--FVE-GD 58
Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126
+ + + + ++ + + A V S + P + + GTLR++ AMR ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-NPRSPYAVAKMYAFYITKNYREAYNLFAVNGI 185
F +S++ +YG+ + P E+ P P+SPY +K+ I + ++A +++ +
Sbjct: 118 --NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 186 -LFN----HESRVRGE--TFVTRKITRAASAIAYNLTDCLYL-GNLDAKRDWGHAKDYVK 237
FN H S GE + + + +A D L + GN D +DY+
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 238 MMHL 241
+M L
Sbjct: 236 VMDL 239
>pdb|1KVT| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 43.5 bits (101), Expect = 4e-05
Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 17/244 (6%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66
L+TG +G GS+ LL G++V L +S + + + E L H F+ GD
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPVIERLGGKHPT--FVE-GD 58
Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126
+ + + + ++ + + A V S + P + + GTLR++ AMR ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-NPRSPYAVAKMYAFYITKNYREAYNLFAVNGI 185
F +S + +YG+ + P E+ P P+SPY +K+ I + ++A +++ +
Sbjct: 118 --NFIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 186 -LFN----HESRVRGE--TFVTRKITRAASAIAYNLTDCLYL-GNLDAKRDWGHAKDYVK 237
FN H S GE + + + +A D L + GN D +DY+
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 238 MMHL 241
+M L
Sbjct: 236 VMDL 239
>pdb|1KVQ| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 43.5 bits (101), Expect = 4e-05
Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 17/244 (6%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66
L+TG +G GS+ LL G++V L +S + + + E L H F+ GD
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPVIERLGGKHPT--FVE-GD 58
Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126
+ + + + ++ + + A V S + P + + GTLR++ AMR ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-NPRSPYAVAKMYAFYITKNYREAYNLFAVNGI 185
F +S + +YG+ + P E+ P P+SPY +K+ I + ++A +++ +
Sbjct: 118 --NFIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 186 -LFN----HESRVRGE--TFVTRKITRAASAIAYNLTDCLYL-GNLDAKRDWGHAKDYVK 237
FN H S GE + + + +A D L + GN D +DY+
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 238 MMHL 241
+M L
Sbjct: 236 VMDL 239
>pdb|1KVU| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 42.7 bits (99), Expect = 7e-05
Identities = 58/244 (23%), Positives = 109/244 (43%), Gaps = 17/244 (6%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66
L+TG +G GS+ LL G++V L +S + + + E L H F+ GD
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPVIERLGGKHPT--FVE-GD 58
Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126
+ + + + ++ + + A V S + P + + GTLR++ AMR ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-NPRSPYAVAKMYAFYITKNYREAYNLFAVNGI 185
F +S++ +YG+ + P E+ P P+SP+ +K+ I + ++A +++ +
Sbjct: 118 --NFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 186 -LFN----HESRVRGE--TFVTRKITRAASAIAYNLTDCLYL-GNLDAKRDWGHAKDYVK 237
FN H S GE + + + +A D L + GN D +DY+
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 238 MMHL 241
+M L
Sbjct: 236 VMDL 239
>pdb|1A9Y| Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
Udp-Glucose
Length = 338
Score = 42.4 bits (98), Expect = 9e-05
Identities = 58/244 (23%), Positives = 108/244 (43%), Gaps = 17/244 (6%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66
L+TG +G GS+ LL G++V L +S + + + E L H F+ GD
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPVIERLGGKHPT--FVE-GD 58
Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126
+ + + + ++ + + A V S + P + + GTLR++ AMR ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-NPRSPYAVAKMYAFYITKNYREAYNLFAVNGI 185
F +S + +YG+ + P E+ P P+SP+ +K+ I + ++A +++ +
Sbjct: 118 --NFIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 186 -LFN----HESRVRGE--TFVTRKITRAASAIAYNLTDCLYL-GNLDAKRDWGHAKDYVK 237
FN H S GE + + + +A D L + GN D +DY+
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 238 MMHL 241
+M L
Sbjct: 236 VMDL 239
>pdb|1A9Z| Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
Udp-Galactose
Length = 338
Score = 42.0 bits (97), Expect = 1e-04
Identities = 58/244 (23%), Positives = 108/244 (43%), Gaps = 17/244 (6%)
Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66
L+TG +G GS+ LL G++V L +S + + + E L H F+ GD
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS--VLPVIERLGGKHPT--FVE-GD 58
Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126
+ + + + ++ + + A V S + P + + GTLR++ AMR ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-NPRSPYAVAKMYAFYITKNYREAYNLFAVNGI 185
F +S + +YG+ + P E+ P P+SP+ +K+ I + ++A +++ +
Sbjct: 118 --NFIFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 186 -LFN----HESRVRGE--TFVTRKITRAASAIAYNLTDCLYL-GNLDAKRDWGHAKDYVK 237
FN H S GE + + + +A D L + GN D +DY+
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 238 MMHL 241
+M L
Sbjct: 236 VMDL 239
>pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 32.3 bits (72), Expect = 0.091
Identities = 80/374 (21%), Positives = 140/374 (37%), Gaps = 60/374 (16%)
Query: 1 MKEKIALITGVTGQDGSYLAEYLLNLGY------EVHGLKRRSSSINTS--RIDHLYEDL 52
M EK+ L+TG G GS+ LL GY H R S+ S R+ L
Sbjct: 1 MAEKV-LVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL---- 55
Query: 53 HSDHKRRFFLHYGDMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGT 112
R D+ D L L + + A V S + P + GT
Sbjct: 56 ---TGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGT 112
Query: 113 LRILEAMRILGLEKKTRFYQASTSELYGEVLETPQNENTPFNP-RSPYAVAKMYAFYITK 171
+++LE M+ G++ +S++ +YG P +E P +PY +K + + +
Sbjct: 113 IQLLEIMKAHGVK---NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIR 169
Query: 172 NYREAYNLFAVNGIL---FN----HESRVRGE--TFVTRKITRAASAIAYNLTDCL-YLG 221
+ +A + N +L FN H S GE + + S +A + L G
Sbjct: 170 DLCQADKTW--NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFG 227
Query: 222 NLDAKRDWGHAKDYVKMMHLMLQAPIPQDYVIATGKTTSVRDFVKMSFEFIGINLEFQNT 281
N D +DY+ ++ L A G ++R + I NL T
Sbjct: 228 NDYDTEDGTGVRDYIHVVDL------------AKGHIAALRKLKEQCGCRI-YNLG-TGT 273
Query: 282 GIKEIGLIKSVDEKRANALKLNLSHLKKGQIVVRIDERYFRPTEVDLLLGDPTKAEKELD 341
G + +++++++ + ++V R R +V +P+ A++EL
Sbjct: 274 GYSVLQMVQAMEKASGKKIPY--------KVVAR------REGDVAACYANPSLAQEELG 319
Query: 342 WVREYDLKELVKDM 355
W L + +D+
Sbjct: 320 WTAALGLDRMCEDL 333
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 31.6 bits (70), Expect = 0.16
Identities = 43/174 (24%), Positives = 67/174 (37%), Gaps = 20/174 (11%)
Query: 1 MKEKIALITGVTGQDGSYLAEYLLNLGY------EVHGLKRRSSSINTS--RIDHLYEDL 52
M EK+ L+TG G GS+ LL GY H R S+ S R+ L
Sbjct: 1 MAEKV-LVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL---- 55
Query: 53 HSDHKRRFFLHYGDMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGT 112
R D+ D L L + + A V S + P + GT
Sbjct: 56 ---TGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGT 112
Query: 113 LRILEAMRILGLEKKTRFYQASTSELYGEVLETPQNENTPFNP-RSPYAVAKMY 165
+++LE M+ G++ +S++ +YG P +E P +PY +K +
Sbjct: 113 IQLLEIMKAHGVK---NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFF 163
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 30.4 bits (67), Expect = 0.35
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 20/174 (11%)
Query: 1 MKEKIALITGVTGQDGSYLAEYLLNLGY------EVHGLKRRSSSINTS--RIDHLYEDL 52
M EK+ L+TG G GS+ LL GY H R S+ S R+ L
Sbjct: 1 MAEKV-LVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL---- 55
Query: 53 HSDHKRRFFLHYGDMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGT 112
R D+ D L L + + A + S + P + GT
Sbjct: 56 ---TGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGT 112
Query: 113 LRILEAMRILGLEKKTRFYQASTSELYGEVLETPQNENTPFNP-RSPYAVAKMY 165
+++LE M+ G++ +S++ +YG P +E P +PY +K +
Sbjct: 113 IQLLEIMKAHGVK---NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFF 163
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE FROM ESCHERICHIA COLI A KEY ENZYME IN
The Biosynthesis Of Gdp-L-Fucose
Length = 321
Score = 28.1 bits (61), Expect = 1.7
Identities = 37/158 (23%), Positives = 59/158 (36%), Gaps = 34/158 (21%)
Query: 136 SELYGEVLETPQNENTPFNPRSPYAVAKMYAFYITKNYREAY----------NLFAVNGI 185
SEL LE P NE PYA+AK+ + ++Y Y NL+ +
Sbjct: 122 SELLQGTLE-PTNE--------PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDN 172
Query: 186 LFNHESRVRGETFVTRKITRAASAIAYNLTDCLYLGNLDAKRDWGHAKDY-VKMMHLMLQ 244
S V + + R A A N D + G+ R++ H D +H+M
Sbjct: 173 FHPSNSHV-----IPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMEL 227
Query: 245 A---------PIPQDYVIATGKTTSVRDFVKMSFEFIG 273
A P+ + TG ++RD + + +G
Sbjct: 228 AHEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVVG 265
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
Transporter Acrb
Length = 1053
Score = 26.9 bits (58), Expect = 3.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 167 FYITKNYREAYNLFAVNGILFNHESRVRGETFVTRK 202
+Y+TK ++FAVNG F + G FV+ K
Sbjct: 597 YYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLK 632
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 26.6 bits (57), Expect = 5.0
Identities = 36/158 (22%), Positives = 59/158 (36%), Gaps = 34/158 (21%)
Query: 136 SELYGEVLETPQNENTPFNPRSPYAVAKMYAFYITKNYREAY----------NLFAVNGI 185
SEL LE P NE PYA+AK+ + ++Y Y NL+ +
Sbjct: 122 SELLQGTLE-PTNE--------PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDN 172
Query: 186 LFNHESRVRGETFVTRKITRAASAIAYNLTDCLYLGNLDAKRDWGHAKDY-VKMMHLMLQ 244
S V + + R A A N D + G+ R++ H D +H+M
Sbjct: 173 FHPSNSHV-----IPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMEL 227
Query: 245 A---------PIPQDYVIATGKTTSVRDFVKMSFEFIG 273
A P+ + TG ++R+ + + +G
Sbjct: 228 AHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVG 265
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 26.2 bits (56), Expect = 6.6
Identities = 18/67 (26%), Positives = 29/67 (42%), Gaps = 3/67 (4%)
Query: 62 LHYGDMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSF---ETPEYTANADGIGTLRILEA 118
L+ GD+ D L + +P + + Q S YT + + IGTL +L A
Sbjct: 71 LYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFA 130
Query: 119 MRILGLE 125
++ G E
Sbjct: 131 IKEFGEE 137
>pdb|1FEP|A Chain A, Ferric Enterobactin Receptor
Length = 724
Score = 26.2 bits (56), Expect = 6.6
Identities = 11/38 (28%), Positives = 20/38 (51%)
Query: 156 RSPYAVAKMYAFYITKNYREAYNLFAVNGILFNHESRV 193
RSPY+ A++++ + N + G+ F+H S V
Sbjct: 401 RSPYSKAEIFSLFAENNXELTDSTIVTPGLRFDHHSIV 438
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 26.2 bits (56), Expect = 6.6
Identities = 10/26 (38%), Positives = 13/26 (49%)
Query: 206 AASAIAYNLTDCLYLGNLDAKRDWGH 231
A S + N D LY G D+ DW +
Sbjct: 603 ATSRVGVNFWDTLYWGGFDSVNDWAN 628
>pdb|1QBA| Bacterial Chitobiase, Glycosyl Hydrolase Family 20
pdb|1QBB| Bacterial Chitobiase Complexed With Chitobiose (Dinag)
Length = 858
Score = 26.2 bits (56), Expect = 6.6
Identities = 10/26 (38%), Positives = 13/26 (49%)
Query: 206 AASAIAYNLTDCLYLGNLDAKRDWGH 231
A S + N D LY G D+ DW +
Sbjct: 603 ATSRVGVNFWDTLYWGGFDSVNDWAN 628
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 26.2 bits (56), Expect = 6.6
Identities = 10/26 (38%), Positives = 13/26 (49%)
Query: 206 AASAIAYNLTDCLYLGNLDAKRDWGH 231
A S + N D LY G D+ DW +
Sbjct: 603 ATSRVGVNFWDTLYWGGFDSVNDWAN 628
>pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 586
Score = 25.8 bits (55), Expect = 8.6
Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 8/55 (14%)
Query: 131 YQASTSELYGEVLETPQN------ENTPFNPRSPYAVAKMYAFYITKNYREAYNL 179
Y + E YG V+E +N E P P+S YAV +Y FY + A NL
Sbjct: 138 YHVNDPERYG-VVEFDKNGTAISLEEKPLEPKSNYAVTGLY-FYDNDVVQMAKNL 190
Score = 25.8 bits (55), Expect = 8.6
Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 8/55 (14%)
Query: 131 YQASTSELYGEVLETPQN------ENTPFNPRSPYAVAKMYAFYITKNYREAYNL 179
Y + E YG V+E +N E P P+S YAV +Y FY + A NL
Sbjct: 431 YHVNDPERYG-VVEFDKNGTAISLEEKPLEPKSNYAVTGLY-FYDNDVVQMAKNL 483
>pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate-Glucose
pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose-1-Phospate
Length = 293
Score = 25.8 bits (55), Expect = 8.6
Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 8/55 (14%)
Query: 131 YQASTSELYGEVLETPQN------ENTPFNPRSPYAVAKMYAFYITKNYREAYNL 179
Y + E YG V+E +N E P P+S YAV +Y FY + A NL
Sbjct: 138 YHVNDPERYG-VVEFDKNGTAISLEEKPLEPKSNYAVTGLY-FYDNDVVQMAKNL 190
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 25.8 bits (55), Expect = 8.6
Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 8/55 (14%)
Query: 131 YQASTSELYGEVLETPQN------ENTPFNPRSPYAVAKMYAFYITKNYREAYNL 179
Y + E YG V+E +N E P P+S YAV +Y FY + A NL
Sbjct: 138 YHVNDPERYG-VVEFDKNGTAISLEEKPLEPKSNYAVTGLY-FYDNDVVQMAKNL 190
>pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 586
Score = 25.8 bits (55), Expect = 8.6
Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 8/55 (14%)
Query: 131 YQASTSELYGEVLETPQN------ENTPFNPRSPYAVAKMYAFYITKNYREAYNL 179
Y + E YG V+E +N E P P+S YAV +Y FY + A NL
Sbjct: 138 YHVNDPERYG-VVEFDKNGTAISLEEKPLEPKSNYAVTGLY-FYDNDVVQMAKNL 190
Score = 25.8 bits (55), Expect = 8.6
Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 8/55 (14%)
Query: 131 YQASTSELYGEVLETPQN------ENTPFNPRSPYAVAKMYAFYITKNYREAYNL 179
Y + E YG V+E +N E P P+S YAV +Y FY + A NL
Sbjct: 431 YHVNDPERYG-VVEFDKNGTAISLEEKPLEPKSNYAVTGLY-FYDNDVVQMAKNL 483
>pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate-Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate-Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose-1-Phospate
pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate-Glucose
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose-1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose-1-Phospate
Length = 293
Score = 25.8 bits (55), Expect = 8.6
Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 8/55 (14%)
Query: 131 YQASTSELYGEVLETPQN------ENTPFNPRSPYAVAKMYAFYITKNYREAYNL 179
Y + E YG V+E +N E P P+S YAV +Y FY + A NL
Sbjct: 138 YHVNDPERYG-VVEFDKNGTAISLEEKPLEPKSNYAVTGLY-FYDNDVVQMAKNL 190
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,190,869
Number of Sequences: 13198
Number of extensions: 89129
Number of successful extensions: 273
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 42
length of query: 381
length of database: 2,899,336
effective HSP length: 90
effective length of query: 291
effective length of database: 1,711,516
effective search space: 498051156
effective search space used: 498051156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)