BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645063|ref|NP_207233.1| hypothetical protein
[Helicobacter pylori 26695]
(191 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 33 0.021
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 33 0.021
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 32 0.047
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 32 0.047
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 32 0.047
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 32 0.047
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 32 0.047
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 31 0.10
pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Gua... 30 0.18
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Ki... 30 0.18
pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader S... 30 0.18
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 30 0.18
pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of ... 29 0.40
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 29 0.40
pdb|3GCB| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDEL... 28 0.52
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 28 0.52
pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And ... 28 0.52
pdb|1GCB| Gal6, Yeast Bleomycin Hydrolase Dna-Binding Pro... 28 0.52
pdb|1A6R| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a 28 0.52
pdb|1EGZ|A Chain A, Cellulase Cel5 From Erwinia Chrysanthem... 27 1.2
pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna Prim... 27 1.5
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 27 2.0
pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyri... 27 2.0
pdb|1IXR|C Chain C, Ruva-Ruvb Complex 26 2.6
pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain ... 26 2.6
pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva D... 26 2.6
pdb|4ICB| Calbindin D9k (Minor A Form) 26 2.6
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 26 2.6
pdb|3ICB| Calcium-Binding Protein (Vitamin D-Dependent, M... 26 2.6
pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidoc... 26 2.6
pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter P... 26 2.6
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Co... 26 3.3
pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With Gua... 26 3.3
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus... 26 3.3
pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein... 26 3.3
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 26 3.3
pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase... 26 3.3
pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant... 26 3.3
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Comp... 26 3.3
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 25 4.4
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 25 4.4
pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 25 4.4
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 25 5.7
pdb|2VSG|A Chain A, A Structural Motif In The Variant Surfa... 25 5.7
pdb|1CI9|A Chain A, Dfp-Inhibited Esterase Estb From Burkho... 25 7.5
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 25 7.5
pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophil... 25 7.5
pdb|1ION|A Chain A, The Septum Site-Determining Protein Min... 25 7.5
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermo... 25 7.5
pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Ma... 24 9.7
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 24 9.7
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 24 9.7
pdb|1MYT| Myoglobin (Met) 24 9.7
pdb|1K8A|Q Chain Q, Co-Crystal Structure Of Carbomycin A Bo... 24 9.7
pdb|4TMK|A Chain A, Complex Of E. Coli Thymidylate Kinase W... 24 9.7
pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Ra... 24 9.7
pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcu... 24 9.7
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 33.1 bits (74), Expect = 0.021
Identities = 13/28 (46%), Positives = 21/28 (74%)
Query: 40 IKIALNTPDIAIIQGPPGTGKTTVINAI 67
+ I++N D+ +I GP G+GK+T+IN I
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVI 53
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 33.1 bits (74), Expect = 0.021
Identities = 13/28 (46%), Positives = 21/28 (74%)
Query: 40 IKIALNTPDIAIIQGPPGTGKTTVINAI 67
+ I++N D+ +I GP G+GK+T+IN I
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVI 53
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.0 bits (71), Expect = 0.047
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 7/45 (15%)
Query: 34 ENQKKAIKIALNTP-------DIAIIQGPPGTGKTTVINAICERL 71
EN KK + +AL D ++ GPPG GKTT+ + I L
Sbjct: 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.0 bits (71), Expect = 0.047
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 7/45 (15%)
Query: 34 ENQKKAIKIALNTP-------DIAIIQGPPGTGKTTVINAICERL 71
EN KK + +AL D ++ GPPG GKTT+ + I L
Sbjct: 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.0 bits (71), Expect = 0.047
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 7/45 (15%)
Query: 34 ENQKKAIKIALNTP-------DIAIIQGPPGTGKTTVINAICERL 71
EN KK + +AL D ++ GPPG GKTT+ + I L
Sbjct: 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.047
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 7/45 (15%)
Query: 34 ENQKKAIKIALNTP-------DIAIIQGPPGTGKTTVINAICERL 71
EN KK + +AL D ++ GPPG GKTT+ + I L
Sbjct: 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.047
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 7/45 (15%)
Query: 34 ENQKKAIKIALNTP-------DIAIIQGPPGTGKTTVINAICERL 71
EN KK + +AL D ++ GPPG GKTT+ + I L
Sbjct: 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.8 bits (68), Expect = 0.10
Identities = 16/45 (35%), Positives = 23/45 (50%), Gaps = 7/45 (15%)
Query: 34 ENQKKAIKIALNTP-------DIAIIQGPPGTGKTTVINAICERL 71
EN KK + +AL D ++ GPPG G+TT+ + I L
Sbjct: 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASEL 75
>pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Guanosine
Monophosphate
Length = 187
Score = 30.0 bits (66), Expect = 0.18
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 4/26 (15%)
Query: 51 IIQGPPGTGKTTVINAICERLFEEYP 76
+I GP GTGK+T++ ++LF EYP
Sbjct: 6 VISGPSGTGKSTLL----KKLFAEYP 27
>pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
Length = 186
Score = 30.0 bits (66), Expect = 0.18
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 4/26 (15%)
Query: 51 IIQGPPGTGKTTVINAICERLFEEYP 76
+I GP GTGK+T++ ++LF EYP
Sbjct: 5 VISGPSGTGKSTLL----KKLFAEYP 26
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.0 bits (66), Expect = 0.18
Identities = 18/53 (33%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 51 IIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIK 103
+ GPPG GKTT A+ LF E + ++ L A N RE++K
Sbjct: 50 LFAGPPGVGKTTAALALARELFGENWRHNFLE----LNASDERGINVIREKVK 98
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 30.0 bits (66), Expect = 0.18
Identities = 21/85 (24%), Positives = 43/85 (49%), Gaps = 10/85 (11%)
Query: 9 LSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALN-----TPDIAIIQGPPGTGKTTV 63
+ + +K + LT+R + K DP + + I+ + T + ++ G PG GKT +
Sbjct: 2 MQALKKYTIDLTERAEQG--KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAI 59
Query: 64 INAICERLFE-EYPKDKNIKGQILL 87
+ + +R+ E P + +KG+ +L
Sbjct: 60 VEGLAQRIINGEVP--EGLKGRRVL 82
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 28.9 bits (63), Expect = 0.40
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 28 FKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAI 67
+ +P+ QK KI P ++ GPPGTGKT + AI
Sbjct: 30 YLREPSRFQKLGGKI----PKGVLMVGPPGTGKTLLAKAI 65
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 28.9 bits (63), Expect = 0.40
Identities = 22/66 (33%), Positives = 39/66 (58%), Gaps = 9/66 (13%)
Query: 128 RLNERLREFAETLIES--VRKKLQKLGDYENIEKILDLEEALRRYYSSPISELEFLKEIE 185
R+++ L+E + L+E+ + +KLQ DY +++I +L EA +RY + L+ IE
Sbjct: 41 RIHQLLKELDDPLLENKDLEEKLQAFLDY--VKEIPNLPEARKRYRIQ-----KSLEMIE 93
Query: 186 KNESFF 191
K S+F
Sbjct: 94 KLRSWF 99
>pdb|3GCB| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 28.5 bits (62), Expect = 0.52
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 103 KVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILD 162
K G +P +G + K + L +LREFAETL R L++ ++I I+
Sbjct: 171 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETL----RTALKERSADDSI--IVT 224
Query: 163 LEEALRRYYSSPISELEFLKEIEKNESF 190
L E ++R +S + ++ NE F
Sbjct: 225 LREQMQREIFRLMSLFMDIPPVQPNEQF 252
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 28.5 bits (62), Expect = 0.52
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 38 KAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNN 97
K I + + I + G G GKTT ++AI + + KG+I+ G D TN
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-------KGKIIF--NGQDITNK 73
Query: 98 ARERIKVGGLPTFKFGAK--------KNAKEEQY-KQDERLNERLREFAETLIESVRKKL 148
I G+ G + +N Y ++D+ +R E+ +L ++++L
Sbjct: 74 PAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERL 133
Query: 149 QKLG 152
++LG
Sbjct: 134 KQLG 137
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
Length = 458
Score = 28.5 bits (62), Expect = 0.52
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 42 IALNTPDIAIIQGPPGTGKTTVINAI 67
I + P ++ GPPGTGKT + A+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAV 258
>pdb|1GCB| Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease (Thiol)
Length = 454
Score = 28.5 bits (62), Expect = 0.52
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 103 KVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILD 162
K G +P +G + K + L +LREFAETL R L++ ++I I+
Sbjct: 154 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETL----RTALKERSADDSI--IVT 207
Query: 163 LEEALRRYYSSPISELEFLKEIEKNESF 190
L E ++R +S + ++ NE F
Sbjct: 208 LREQMQREIFRLMSLFMDIPPVQPNEQF 235
>pdb|1A6R| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 28.5 bits (62), Expect = 0.52
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 103 KVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILD 162
K G +P +G + K + L +LREFAETL R L++ ++I I+
Sbjct: 171 KYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETL----RTALKERSADDSI--IVT 224
Query: 163 LEEALRRYYSSPISELEFLKEIEKNESF 190
L E ++R +S + ++ NE F
Sbjct: 225 LREQMQREIFRLMSLFMDIPPVQPNEQF 252
>pdb|1EGZ|A Chain A, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
Enzyme
pdb|1EGZ|C Chain C, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
Enzyme
pdb|1EGZ|B Chain B, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
Enzyme
Length = 291
Score = 27.3 bits (59), Expect = 1.2
Identities = 16/56 (28%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Query: 92 HDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERL--NERLREFAETLIESVR 145
H A NN E I+ K+G K N E Y + ++ + ++ +AE +I ++R
Sbjct: 100 HSAENNRSEAIRFFQEMARKYGNKPNVIYEIYNEPLQVSWSNTIKPYAEAVISAIR 155
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
Length = 698
Score = 26.9 bits (58), Expect = 1.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 132 RLREFAETLIESVRKKLQKLGDYENIEKILDLE 164
R E A+ +IE+ ++ ++ +GD+ N +LD E
Sbjct: 655 RTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTE 687
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 26.6 bits (57), Expect = 2.0
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 38 KAIKIALNTPDIAIIQGPPGTGKTTVINAI 67
K + + + + I GP G+GK+T++N I
Sbjct: 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside
Kinase
pdb|1J90|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside
Kinase
Length = 230
Score = 26.6 bits (57), Expect = 2.0
Identities = 17/43 (39%), Positives = 23/43 (52%), Gaps = 6/43 (13%)
Query: 37 KKAIKIALNT-PDIAIIQGPPGTGKTTVINAICERLFEEYPKD 78
+K K A T P +I+G G+GKTT +N FE+Y D
Sbjct: 9 RKGTKYAEGTQPFTVLIEGNIGSGKTTYLNH-----FEKYKND 46
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 26.2 bits (56), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 51 IIQGPPGTGKTTVINAICERL 71
++ GPPG GKTT+ + I L
Sbjct: 42 LLFGPPGLGKTTLAHVIAHEL 62
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna
pdb|1MHD|B Chain B, Crystal Structure Of A Smad Mh1 Domain Bound To Dna
Length = 132
Score = 26.2 bits (56), Expect = 2.6
Identities = 16/58 (27%), Positives = 29/58 (49%), Gaps = 7/58 (12%)
Query: 119 KEEQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEALRRYYSSPIS 176
K EQ Q+E+ + E ++S+ KKL+K G + +EK + + + + P S
Sbjct: 20 KGEQNGQEEK-------WCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRS 70
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 26.2 bits (56), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 51 IIQGPPGTGKTTVINAICERL 71
++ GPPG GKTT+ + I L
Sbjct: 42 LLFGPPGLGKTTLAHVIAHEL 62
>pdb|4ICB| Calbindin D9k (Minor A Form)
Length = 76
Score = 26.2 bits (56), Expect = 2.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 29 KNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQI 85
+ DP + K+ +K+ L T ++++GP + + LFEE DKN G++
Sbjct: 18 EGDPNQLSKEELKLLLQTEFPSLLKGP----------STLDELFEEL--DKNGDGEV 62
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 26.2 bits (56), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 51 IIQGPPGTGKTTVINAICERL 71
++ GPPG GKTT+ + I L
Sbjct: 42 LLFGPPGLGKTTLAHVIAHEL 62
>pdb|3ICB| Calcium-Binding Protein (Vitamin D-Dependent, Minor A Form)
(ICABP)
pdb|1IG5|A Chain A, Bovine Calbindin D9k Binding Mg2+
pdb|1IGV|A Chain A, Bovine Calbindin D9k Binding Mn2+
Length = 75
Score = 26.2 bits (56), Expect = 2.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 29 KNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQI 85
+ DP + K+ +K+ L T ++++GP + + LFEE DKN G++
Sbjct: 17 EGDPNQLSKEELKLLLQTEFPSLLKGP----------STLDELFEEL--DKNGDGEV 61
>pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|B Chain B, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|C Chain C, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|D Chain D, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|E Chain E, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|F Chain F, Adenylate Kinase From Sulfolobus Acidocaldarius
Length = 194
Score = 26.2 bits (56), Expect = 2.6
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 49 IAIIQGPPGTGKTTVINAICERLFEEYPKDKNIK-GQILLCAQ---GHDATNNARERIKV 104
I I+ G PG GK+TV+ + E L + +K I G +L G+ + ++ V
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 105 GGLPTFKFGAKKNAKEE 121
+ A K EE
Sbjct: 63 EKQKKLQIDAAKGIAEE 79
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
Length = 330
Score = 26.2 bits (56), Expect = 2.6
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 4/51 (7%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNI 81
D E AIK + I+ G G+GKTT I +I E + PK++ I
Sbjct: 155 DNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIXEFI----PKEERI 201
>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Mg-Adp-Alf3
Length = 589
Score = 25.8 bits (55), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 42 IALNTPDIAIIQGPPGTGKTTVINAICERL 71
IA N + ++ G G GKTT+ AI RL
Sbjct: 322 IARNEHGLIMLMGKGGVGKTTMAAAIAVRL 351
>pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With
Guanosine-5'-(Beta,Gamma-Imido) Triphosphate (Gdpnp)
Length = 405
Score = 25.8 bits (55), Expect = 3.3
Identities = 16/56 (28%), Positives = 32/56 (56%), Gaps = 3/56 (5%)
Query: 133 LREFAETLIESVRKKLQ-KLGDYENIEKILDLEEALRRYYSSPISELE--FLKEIE 185
+R A +E + K + K G+ E ++KI +L +A+ Y +P+ +++ FL +E
Sbjct: 171 IRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVE 226
>pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
Length = 405
Score = 25.8 bits (55), Expect = 3.3
Identities = 16/56 (28%), Positives = 32/56 (56%), Gaps = 3/56 (5%)
Query: 133 LREFAETLIESVRKKLQ-KLGDYENIEKILDLEEALRRYYSSPISELE--FLKEIE 185
+R A +E + K + K G+ E ++KI +L +A+ Y +P+ +++ FL +E
Sbjct: 171 IRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVE 226
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 25.8 bits (55), Expect = 3.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 23 VRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKT 61
+R K F+ PT+ Q K I + LN + Q G+GKT
Sbjct: 21 IRNKGFEK-PTDIQXKVIPLFLNDEYNIVAQARTGSGKT 58
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 25.8 bits (55), Expect = 3.3
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 74 EYPKDKNIKGQILLCAQGHDATNNARE--RIKVGGLPTFKFGAKKNAKEEQYKQDERLNE 131
+Y D I +IL Q D R R +G + F + E + D L
Sbjct: 626 DYLADVRISDEIL--KQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLN 683
Query: 132 RLREFAETLIESVRKKLQKLGDYENIEKILDLE 164
RLREF + I + + L Y+ ++ +++E
Sbjct: 684 RLREFTASTINNY-ENFDYLNIYQEVQNFINVE 715
>pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase Large Domain
pdb|1QHM|B Chain B, Escherichia Coli Pyruvate Formate Lyase Large Domain
Length = 624
Score = 25.8 bits (55), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 120 EEQYKQDERLNERLREFAETLIESVRKKLQKLGDYEN 156
E +Y Q + R+ + A L+E KK+QKL Y +
Sbjct: 560 EGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRD 596
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 25.8 bits (55), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 120 EEQYKQDERLNERLREFAETLIESVRKKLQKLGDYEN 156
E +Y Q + R+ + A L+E KK+QKL Y +
Sbjct: 560 EGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRD 596
>pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
Length = 759
Score = 25.8 bits (55), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 120 EEQYKQDERLNERLREFAETLIESVRKKLQKLGDYEN 156
E +Y Q + R+ + A L+E KK+QKL Y +
Sbjct: 560 EGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRD 596
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 25.4 bits (54), Expect = 4.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 34 ENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAI 67
+N + ++ P ++ GPPG GKT + A+
Sbjct: 60 KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 93
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 25.4 bits (54), Expect = 4.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 38 KAIKIALNTPDIAIIQGPPGTGKTTVINAI 67
K + + + + I GP G+GK+T +N I
Sbjct: 22 KNVNLNIKEGEFVSIXGPSGSGKSTXLNII 51
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp
From Thermus Thermophilus
Length = 254
Score = 25.4 bits (54), Expect = 4.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 34 ENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAI 67
+N + ++ P ++ GPPG GKT + A+
Sbjct: 36 KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 69
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 25.0 bits (53), Expect = 5.7
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 47 PDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIKVGG 106
P + ++ G G GKTT I + R FE+ +G+ ++ A G A E+++V G
Sbjct: 93 PFVILMVGVNGVGKTTTIGKLA-RQFEQ-------QGKSVMLAAGDTFRAAAVEQLQVWG 144
>pdb|2VSG|A Chain A, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
pdb|2VSG|B Chain B, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
Length = 358
Score = 25.0 bits (53), Expect = 5.7
Identities = 30/108 (27%), Positives = 45/108 (40%), Gaps = 19/108 (17%)
Query: 84 QILLCAQGHDATNNARERIKVGGLPT-------FKFGAKKNAKEEQYKQDERLNERLREF 136
++L AQG E +K+ T F+ A K YK+DE L
Sbjct: 249 ELLQLAQGPKPGQTEVETMKLLAQKTAALDSIKFQLAASTGKKTSDYKEDENLKTEYFGK 308
Query: 137 AETLIESVRKKLQ----KLGDYENIEK-----ILDLEEALRR---YYS 172
E+ IE++ K++ K D E+ K L+ EE L+R YY+
Sbjct: 309 TESNIEALWNKVKEEKVKGADPEDPSKESKISDLNTEEQLQRVLDYYA 356
>pdb|1CI9|A Chain A, Dfp-Inhibited Esterase Estb From Burkholderia Gladioli
pdb|1CI9|B Chain B, Dfp-Inhibited Esterase Estb From Burkholderia Gladioli
pdb|1CI8|A Chain A, Esterase Estb From Burkholderia Gladioli: An Esterase With
(Beta)-Lactamase Fold.
pdb|1CI8|B Chain B, Esterase Estb From Burkholderia Gladioli: An Esterase With
(Beta)-Lactamase Fold
Length = 392
Score = 24.6 bits (52), Expect = 7.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 140 LIESVRKKLQKLGDYENIE-KILDLEEALRRYYSSPIS 176
L+E +LG + I+ + DL+E LRR S+P+S
Sbjct: 135 LLEGAGSVYDRLGISDGIDLRDFDLDENLRRLASAPLS 172
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of
Human Tap1
Length = 260
Score = 24.6 bits (52), Expect = 7.5
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 28 FKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFE 73
+ N P + + L ++ + GP G+GK+TV A+ + L++
Sbjct: 24 YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVA-ALLQNLYQ 68
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
Length = 405
Score = 24.6 bits (52), Expect = 7.5
Identities = 12/43 (27%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 145 RKKLQKLGDYENIEKILDLEEALRRYYSSPISELE--FLKEIE 185
R + G+ E ++KI +L +A+ Y +P+ +++ FL +E
Sbjct: 184 RNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVE 226
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg- Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 24.6 bits (52), Expect = 7.5
Identities = 14/37 (37%), Positives = 19/37 (50%)
Query: 49 IAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQI 85
I+I+ G GTGKTTV + L E K + G +
Sbjct: 5 ISIVSGKGGTGKTTVTANLSVALGEXGRKVLAVDGDL 41
>pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 24.6 bits (52), Expect = 7.5
Identities = 12/43 (27%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 145 RKKLQKLGDYENIEKILDLEEALRRYYSSPISELE--FLKEIE 185
R + G+ E ++KI +L +A+ Y +P+ +++ FL +E
Sbjct: 184 RNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVE 226
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
Length = 350
Score = 24.3 bits (51), Expect = 9.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 34 ENQKKAIKIALNTPDIA--IIQGPPGTGKTTVINAICERLFE 73
E+ K A+ + P I ++ G GTGK+T + A+ L E
Sbjct: 30 EDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPE 71
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 24.3 bits (51), Expect = 9.7
Identities = 18/54 (33%), Positives = 33/54 (60%), Gaps = 7/54 (12%)
Query: 115 KKNAKEEQYKQDER-LNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEAL 167
K + KE++Y+++ + L+++L+E AET E + + KL + I DLE+ L
Sbjct: 213 KYSQKEDKYEEEIKVLSDKLKE-AETRAEFAERSVTKLE-----KSIDDLEDEL 260
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 24.3 bits (51), Expect = 9.7
Identities = 18/54 (33%), Positives = 33/54 (60%), Gaps = 7/54 (12%)
Query: 115 KKNAKEEQYKQDER-LNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEAL 167
K + KE++Y+++ + L+++L+E AET E + + KL + I DLE+ L
Sbjct: 213 KYSQKEDKYEEEIKVLSDKLKE-AETRAEFAERSVTKLE-----KSIDDLEDEL 260
>pdb|1MYT| Myoglobin (Met)
Length = 146
Score = 24.3 bits (51), Expect = 9.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 54 GPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNA 98
GP TT+ + RLF+E+P+ + + + AQ A N A
Sbjct: 11 GPVEADYTTMGGLVLTRLFKEHPETQKLFPKFAGIAQADIAGNAA 55
>pdb|1K8A|Q Chain Q, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|Q Chain Q, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|Q Chain Q, Co-Crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|Q Chain Q, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|Q Chain Q, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1JJ2|O Chain O, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|O Chain O, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1FFK|M Chain M, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 148
Score = 24.3 bits (51), Expect = 9.7
Identities = 19/69 (27%), Positives = 30/69 (42%), Gaps = 2/69 (2%)
Query: 98 ARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAE--TLIESVRKKLQKLGDYE 155
A+ K G K GA++N+KE+ + +LRE + TL S + L
Sbjct: 70 AKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGG 129
Query: 156 NIEKILDLE 164
+ + DLE
Sbjct: 130 EFDSVADLE 138
>pdb|4TMK|A Chain A, Complex Of E. Coli Thymidylate Kinase With The
Bisubstrate Inhibitor Tp5a
pdb|5TMP|A Chain A, Complex Of E. Coli Thymidylate Kinase With The
Bisubstrate Inhibitor Aztp5a
Length = 213
Score = 24.3 bits (51), Expect = 9.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 51 IIQGPPGTGKTTVINAICERL 71
+I+G G GKTT N + E L
Sbjct: 7 VIEGLEGAGKTTARNVVVETL 27
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 24.3 bits (51), Expect = 9.7
Identities = 21/71 (29%), Positives = 33/71 (45%), Gaps = 2/71 (2%)
Query: 121 EQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILDL-EEALRRYYSSPISELE 179
E+ K++ + E+ ++F E LIE V KK + L + KI +L E + SE+
Sbjct: 2 ERVKKEIKDLEKAKDFTEELIEKV-KKYKALAREAALSKIGELASEIFAEFTEGKYSEVV 60
Query: 180 FLKEIEKNESF 190
E K F
Sbjct: 61 VRAEENKVRLF 71
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 24.3 bits (51), Expect = 9.7
Identities = 10/15 (66%), Positives = 12/15 (79%)
Query: 49 IAIIQGPPGTGKTTV 63
I+I+ G GTGKTTV
Sbjct: 5 ISIVSGKGGTGKTTV 19
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.135 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,085,097
Number of Sequences: 13198
Number of extensions: 44007
Number of successful extensions: 181
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 59
length of query: 191
length of database: 2,899,336
effective HSP length: 83
effective length of query: 108
effective length of database: 1,803,902
effective search space: 194821416
effective search space used: 194821416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)