BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645064|ref|NP_207234.1| hypothetical protein
[Helicobacter pylori 26695]
(121 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome... 25 1.9
pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome... 25 1.9
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 25 3.2
pdb|1IG3|A Chain A, Mouse Thiamin Pyrophosphokinase Complex... 23 7.1
pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna Prim... 23 9.2
pdb|1JS1|X Chain X, Crystal Structure Of A New Transcarbamy... 23 9.2
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 232
Score = 25.4 bits (54), Expect = 1.9
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 3/49 (6%)
Query: 27 ANLSIIHALRATQEGFE---DDGVMRNYDLLESQFKENLTKEDRELLES 72
++L IHA +T G+ G + +LES +K++LTKE+ L S
Sbjct: 108 SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS 156
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
Length = 222
Score = 25.4 bits (54), Expect = 1.9
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 3/49 (6%)
Query: 27 ANLSIIHALRATQEGFE---DDGVMRNYDLLESQFKENLTKEDRELLES 72
++L IHA +T G+ G + +LES +K++LTKE+ L S
Sbjct: 108 SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS 156
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 24.6 bits (52), Expect = 3.2
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 7 SSMREKLSQLKARQQKQEMPANLSIIHALRATQEGFEDDGVMRNYDLLESQFKENLTKED 66
+ ++ ++++LKA+ K+E L+A ED+ +N L + + E+ +
Sbjct: 1077 AELQAQIAELKAQLAKKE--------EELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Query: 67 RELLESPKPNLEKLQELKIRLLEK 90
+E LES K K ++ K L E+
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEE 1152
>pdb|1IG3|A Chain A, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin
pdb|1IG3|B Chain B, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin
Length = 263
Score = 23.5 bits (49), Expect = 7.1
Identities = 15/56 (26%), Positives = 30/56 (52%), Gaps = 4/56 (7%)
Query: 39 QEGFEDDGVMRNYDLLESQFKENLTKEDRELLESPKPN----LEKLQELKIRLLEK 90
+E F + V ++D + + KE TK+ +L+ +P + + LQ L+ ++ EK
Sbjct: 80 RESFLPEFVSGDFDSIRPEVKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEK 135
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
Length = 698
Score = 23.1 bits (48), Expect = 9.2
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 9 MREKLSQLKARQQKQEMPANLSIIHALRATQEGFEDDGVMRNYDLLESQFKENLTKEDRE 68
+ + + L A+Q++ P + I L + + + + S ++ K E
Sbjct: 210 IEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQP---KGGTE 266
Query: 69 LLESPKPNLEKLQELKIRLLEKNGIFKPPKQKSQ 102
+ P+ + +I+ + GIFK PK K+Q
Sbjct: 267 MFCHPRTGKPLPKYPRIKTPKVGGIFKKPKNKAQ 300
>pdb|1JS1|X Chain X, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
pdb|1JS1|Y Chain Y, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
pdb|1JS1|Z Chain Z, Crystal Structure Of A New Transcarbamylase From The
Anaerobic Bacterium Bacteroides Fragilis At 2.0 A
Resolution
Length = 324
Score = 23.1 bits (48), Expect = 9.2
Identities = 10/15 (66%), Positives = 12/15 (79%)
Query: 4 FFNSSMREKLSQLKA 18
FFNSS+R +LS KA
Sbjct: 43 FFNSSLRTRLSTQKA 57
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.133 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,843
Number of Sequences: 13198
Number of extensions: 21940
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 6
length of query: 121
length of database: 2,899,336
effective HSP length: 77
effective length of query: 44
effective length of database: 1,883,090
effective search space: 82855960
effective search space used: 82855960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)