BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645067|ref|NP_207237.1| hypothetical protein
[Helicobacter pylori 26695]
(366 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1VP3| Vaccinia Virus Protein Vp39 In Complex With S-A... 29 0.97
pdb|1VPT| As11 Variant Of Vaccinia Virus Protein Vp39 In ... 29 0.97
pdb|3MCT| Vaccinia Methyltransferase Vp39 Complexed With ... 29 0.97
pdb|3MAG| Vaccinia Methyltransferase Vp39 Complexed With ... 29 0.97
pdb|1V39| Dc26 Mutant Of Vaccinia Virus Protein Vp39 In C... 29 0.97
pdb|1AV6|A Chain A, Vaccinia Methyltransferase Vp39 Complex... 29 0.97
pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldo... 29 0.97
pdb|4DCG| Vaccinia Methyltransferase Vp39 Mutant D182a Co... 29 0.97
pdb|1JTE|A Chain A, Crystal Structure Analysis Of Vp39 F180... 29 0.97
pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldo... 29 0.97
pdb|1JSZ|A Chain A, Crystal Structure Analysis Of N7,9-Dime... 29 0.97
pdb|1EQA| Vaccinia Methyltransferase Vp39 Mutant E233q Co... 28 1.7
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 28 2.2
pdb|1EAM|A Chain A, Vaccinia Methyltransferase Vp39 Mutant ... 27 2.8
>pdb|1VP3| Vaccinia Virus Protein Vp39 In Complex With S-Adenosylhomocysteine
Length = 348
Score = 28.9 bits (63), Expect = 0.97
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + +K + Y L + R KVV++F++ QE +
Sbjct: 227 SIYTGENMRLTRVTKSDAVNYEKKMYY------------LNKIVRNKVVVNFDYPNQEYD 274
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 275 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 301
>pdb|1VPT| As11 Variant Of Vaccinia Virus Protein Vp39 In Complex With
S-Adenosyl-L-Methionine
Length = 348
Score = 28.9 bits (63), Expect = 0.97
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + +K + Y L + R KVV++F++ QE +
Sbjct: 227 SIYTGENMRLTRVTKSDAVNYEKKMYY------------LNKIVRNKVVVNFDYPNQEYD 274
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 275 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 301
>pdb|3MCT| Vaccinia Methyltransferase Vp39 Complexed With M3cyt And
S-Adenosylhomocysteine
pdb|1B42| Vaccinia Methyltransferase Vp39 Complexed With M1ade And
S-Adenosylhomocysteine
Length = 297
Score = 28.9 bits (63), Expect = 0.97
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + +K + Y L + R KVV++F++ QE +
Sbjct: 212 SIYTGENMRLTRVTKSDAVNYEKKMYY------------LNKIVRNKVVVNFDYPNQEYD 259
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 260 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 286
>pdb|3MAG| Vaccinia Methyltransferase Vp39 Complexed With M3ade And
S-Adenosylhomocysteine
Length = 307
Score = 28.9 bits (63), Expect = 0.97
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + +K + Y L + R KVV++F++ QE +
Sbjct: 212 SIYTGENMRLTRVTKSDAVNYEKKMYY------------LNKIVRNKVVVNFDYPNQEYD 259
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 260 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 286
>pdb|1V39| Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S-Adenosylhomocysteine And M7g(5')pppg
pdb|2VP3| Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S-Adenosylhomocysteine And M7g(5')pppg
pdb|1VP9| Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S-Adenosylhomocysteine
pdb|1P39| Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S-Adenosylhomocysteine And M7g(5')pppg
Length = 322
Score = 28.9 bits (63), Expect = 0.97
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + +K + Y L + R KVV++F++ QE +
Sbjct: 227 SIYTGENMRLTRVTKSDAVNYEKKMYY------------LNKIVRNKVVVNFDYPNQEYD 274
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 275 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 301
>pdb|1AV6|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M7g Capped
Rna Hexamer And S-Adenosylhomocysteine
Length = 289
Score = 28.9 bits (63), Expect = 0.97
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + +K + Y L + R KVV++F++ QE +
Sbjct: 204 SIYTGENMRLTRVTKSDAVNYEKKMYY------------LNKIVRNKVVVNFDYPNQEYD 251
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 252 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 278
>pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldolase
pdb|1DOS|B Chain B, Structure Of Fructose-Bisphosphate Aldolase
Length = 358
Score = 28.9 bits (63), Expect = 0.97
Identities = 21/81 (25%), Positives = 38/81 (45%), Gaps = 5/81 (6%)
Query: 149 DASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALV 208
D ++ + K+ + V C GT ++ +L T K K P +VQFSN +F
Sbjct: 16 DVQKVFQVAKENNFALPAVNCV--GTDSINAVLETAA---KVKAPVIVQFSNGGASFIAG 70
Query: 209 QKADSSITANKALIRSLVGAY 229
+ S + A++ ++ GA+
Sbjct: 71 KGVKSDVPQGAAILGAISGAH 91
>pdb|4DCG| Vaccinia Methyltransferase Vp39 Mutant D182a Complexed With M7g
And S-Adenosylhomocysteine
Length = 307
Score = 28.9 bits (63), Expect = 0.97
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + +K + Y L + R KVV++F++ QE +
Sbjct: 212 SIYTGENMRLTRVTKSDAVNYEKKMYY------------LNKIVRNKVVVNFDYPNQEYD 259
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 260 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 286
>pdb|1JTE|A Chain A, Crystal Structure Analysis Of Vp39 F180w Mutant
pdb|1JTF|A Chain A, Crystal Structure Analysis Of Vp39-F180w Mutant And
M7gpppg Complex
Length = 307
Score = 28.9 bits (63), Expect = 0.97
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + +K + Y L + R KVV++F++ QE +
Sbjct: 212 SIYTGENMRLTRVTKSDAVNYEKKMYY------------LNKIVRNKVVVNFDYPNQEYD 259
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 260 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 286
>pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1B57|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1ZEN| Class Ii Fructose-1,6-Bisphosphate Aldolase
Length = 358
Score = 28.9 bits (63), Expect = 0.97
Identities = 21/81 (25%), Positives = 38/81 (45%), Gaps = 5/81 (6%)
Query: 149 DASVIYHLEKKLGDYIFYVACFFFGTTALLIILLTILLPLKQKEPYLVQFSNNKENFALV 208
D ++ + K+ + V C GT ++ +L T K K P +VQFSN +F
Sbjct: 16 DVQKVFQVAKENNFALPAVNCV--GTDSINAVLETAA---KVKAPVIVQFSNGGASFIAG 70
Query: 209 QKADSSITANKALIRSLVGAY 229
+ S + A++ ++ GA+
Sbjct: 71 KGVKSDVPQGAAILGAISGAH 91
>pdb|1JSZ|A Chain A, Crystal Structure Analysis Of N7,9-Dimethylguanine-Vp39
Complex
pdb|1BKY| Vaccinia Methyltransferase Vp39 Complexed With M1cyt And
S-Adenosylhomocysteine
Length = 307
Score = 28.9 bits (63), Expect = 0.97
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + +K + Y L + R KVV++F++ QE +
Sbjct: 212 SIYTGENMRLTRVTKSDAVNYEKKMYY------------LNKIVRNKVVVNFDYPNQEYD 259
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 260 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 286
>pdb|1EQA| Vaccinia Methyltransferase Vp39 Mutant E233q Complexed With M7g
And S-Adenosylhomocysteine
Length = 297
Score = 28.1 bits (61), Expect = 1.7
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + K + Y L + R KVV++F++ QE +
Sbjct: 212 SIYTGENMRLTRVTKSDAVNYQKKMYY------------LNKIVRNKVVVNFDYPNQEYD 259
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 260 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 286
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 27.7 bits (60), Expect = 2.2
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 252 EQSSNEVWYEFEKLIAHYDSIYTNPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESL 311
EQ+SNEV F K A+Y +L A Y+DK +I +SL + L
Sbjct: 207 EQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAFNYMDK-FNEQEINLSLEELKDQRML 265
Query: 312 KRYKVVMSFEFKKQEINFDSMSLNPTG 338
RY+ +E KQ S SL+ G
Sbjct: 266 SRYE---KWEKIKQHYQHWSDSLSEEG 289
>pdb|1EAM|A Chain A, Vaccinia Methyltransferase Vp39 Mutant (Ec: 2.7.7.19)
Length = 307
Score = 27.3 bits (59), Expect = 2.8
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 23/96 (23%)
Query: 271 SIYT--NPLLTRKVKIANIYLDKDLAYIDIEVSLYHSGELESLKRYKVVMSFEFKKQEIN 328
SIYT N LTR K + K + Y L + R KVV++F++ QE +
Sbjct: 212 SIYTGENMRLTRVTKSDAVNYAKKMYY------------LNKIVRNKVVVNFDYPNQEYD 259
Query: 329 FDSMSLNPTGFMVTSYDVTEIAIVNYPTAKAIGLFL 364
+ M FM+ T +PT KA LFL
Sbjct: 260 YFHMY-----FMLR----TVYCNKTFPTTKAKVLFL 286
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.134 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,923,247
Number of Sequences: 13198
Number of extensions: 76903
Number of successful extensions: 218
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 14
length of query: 366
length of database: 2,899,336
effective HSP length: 89
effective length of query: 277
effective length of database: 1,724,714
effective search space: 477745778
effective search space used: 477745778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)