BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645071|ref|NP_207241.1| hypothetical protein
[Helicobacter pylori 26695]
(100 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FDJ|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 25 1.7
pdb|1FIN|B Chain B, Cyclin A - Cyclin-Dependent Kinase 2 Co... 25 1.7
pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2 - Human Cyc... 25 1.7
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NI... 25 1.7
pdb|1VIN| Bovine Cyclin A3 25 1.7
pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate... 25 1.7
pdb|1BXN|A Chain A, The Crystal Structure Of Rubisco From A... 23 3.9
pdb|1QO5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 23 6.6
>pdb|1FDJ|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
Length = 363
Score = 24.6 bits (52), Expect = 1.7
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 35 KQKFTQILDFISNDFIKAIGGLIIVGTCIYAYKNWDRLGEIGWKCVGIII 84
+++F +IL + N ++IGG+I+ +Y + +L K GI++
Sbjct: 55 RRQFREILFTVDNSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVV 104
>pdb|1FIN|B Chain B, Cyclin A - Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A - Cyclin-Dependent Kinase 2 Complex
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
Length = 260
Score = 24.6 bits (52), Expect = 1.7
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 12 KQIRRMMSLAILMPSFLLAAPDYKQKFTQ 40
KQ+ RM L + + +F LAAP Q TQ
Sbjct: 117 KQVLRMEHLVLKVLTFDLAAPTVNQFLTQ 145
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2 - Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2 - Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 24.6 bits (52), Expect = 1.7
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 12 KQIRRMMSLAILMPSFLLAAPDYKQKFTQ 40
KQ+ RM L + + +F LAAP Q TQ
Sbjct: 115 KQVLRMEHLVLKVLTFDLAAPTVNQFLTQ 143
>pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
Substrate
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
Substrate
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
Length = 258
Score = 24.6 bits (52), Expect = 1.7
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 12 KQIRRMMSLAILMPSFLLAAPDYKQKFTQ 40
KQ+ RM L + + +F LAAP Q TQ
Sbjct: 115 KQVLRMEHLVLKVLTFDLAAPTVNQFLTQ 143
>pdb|1VIN| Bovine Cyclin A3
Length = 268
Score = 24.6 bits (52), Expect = 1.7
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 12 KQIRRMMSLAILMPSFLLAAPDYKQKFTQ 40
KQ+ RM L + + +F LAAP Q TQ
Sbjct: 119 KQVLRMEHLVLKVLAFDLAAPTINQFLTQ 147
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
Length = 259
Score = 24.6 bits (52), Expect = 1.7
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 12 KQIRRMMSLAILMPSFLLAAPDYKQKFTQ 40
KQ+ RM L + + +F LAAP Q TQ
Sbjct: 116 KQVLRMEHLVLKVLTFDLAAPTVNQFLTQ 144
>pdb|1BXN|A Chain A, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|C Chain C, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|E Chain E, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|G Chain G, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms
Length = 485
Score = 23.5 bits (49), Expect = 3.9
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 48 DFIKAIGGLIIV------GTCIYAYKNWDRLGEI 75
+F K++G +II+ TCI + NW R ++
Sbjct: 257 EFAKSLGSVIIMVDLIVGWTCIQSMSNWCRQNDM 290
>pdb|1QO5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|M Chain M, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|P Chain P, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|H Chain H, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|J Chain J, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|E Chain E, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|K Chain K, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|F Chain F, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|G Chain G, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|I Chain I, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|L Chain L, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|N Chain N, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|O Chain O, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|Q Chain Q, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|R Chain R, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
Length = 363
Score = 22.7 bits (47), Expect = 6.6
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 35 KQKFTQILDFISNDFIKAIGGLIIVGTCIYAYKNWDRLGEIGWKCVGIII 84
+++F +IL + + ++IGG+I+ +Y + +L K GI++
Sbjct: 55 RRQFREILFSVDSSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVV 104
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.330 0.143 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,975
Number of Sequences: 13198
Number of extensions: 16734
Number of successful extensions: 48
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 8
length of query: 100
length of database: 2,899,336
effective HSP length: 76
effective length of query: 24
effective length of database: 1,896,288
effective search space: 45510912
effective search space used: 45510912
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)