BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644676|ref|NP_206846.1| nodulation protein (nolK)
[Helicobacter pylori 26695]
(310 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia ... 208 6e-55
pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy... 207 1e-54
pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase ... 206 3e-54
pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase ... 205 5e-54
pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase ... 205 5e-54
pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase ... 203 2e-53
pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galact... 44 3e-05
pdb|1UDC| Structure Of Udp-Galactose-4-Epimerase Complexe... 44 3e-05
pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli U... 43 4e-05
pdb|1KVU| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 43 5e-05
pdb|1KVS| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 42 7e-05
pdb|1KVQ| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 42 7e-05
pdb|1KVR| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 42 7e-05
pdb|1A9Z| Udp-Galactose 4-Epimerase Mutant S124aY149F COM... 42 1e-04
pdb|1A9Y| Udp-Galactose 4-Epimerase Mutant S124aY149F COM... 42 1e-04
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epim... 42 1e-04
pdb|1KVT| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 41 2e-04
pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accomm... 40 3e-04
pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-De... 40 3e-04
pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutan... 28 1.7
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose... 28 1.7
pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutan... 28 1.7
pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic A... 28 1.7
pdb|1AQM| Alpha-Amylase From Alteromonas Haloplanctis Com... 28 1.7
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens In... 27 3.0
pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural... 27 3.0
pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wi... 27 3.0
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In... 27 3.0
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens In... 27 3.0
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant O... 27 3.0
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wi... 27 3.0
pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Ce... 27 3.9
pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Anti... 27 3.9
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose... 26 6.6
pdb|1KXH|A Chain A, Crystal Structure Of The Complex Betwee... 26 6.6
pdb|1BEV|4 Chain 4, Bovine Enterovirus Vg-5-27 26 6.6
pdb|2ASR| The Three-Dimensional Structure Of The Aspartat... 26 6.6
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 208 bits (530), Expect = 6e-55
Identities = 116/310 (37%), Positives = 179/310 (57%), Gaps = 9/310 (2%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLLTPKKSELCLLDKDNVQAYLKEYKPTGIIHCAG 64
+ I G GMVG ++ + DV L+ + EL LLD V + + + A
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQ-RGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 65 RVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAINLASSCAYPKFAPNPLKESDL 124
+VGGIVAN + ++ +N+++ + +A + V K + L SSC YPK A P+ ES+L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL 124
Query: 125 LNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLVPCNLYGEFDKFEEKIAHMIPGL 184
L G+LEPTNE YA+AK++ +K CE + + G Y++++P NLYG D F +H+IP L
Sbjct: 125 LQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 185 IARMHTAKLKNEKEFAMWGDGTARREYLNAKDLA----RFISLAY----ENIASIPSVMN 236
+ R H A +N + +WG GT RE+L+ D+A + LA+ EN + S +N
Sbjct: 185 LRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 237 VGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVGMQQKLMDISKQRALKWELEIPLEQG 296
VG+GVD +I E + +A+V+ YKG V D SKP G +KL+D+++ L W EI LE G
Sbjct: 245 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 297 IKEAYEYYLK 306
+ Y+++L+
Sbjct: 305 LASTYQWFLE 314
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE FROM ESCHERICHIA COLI A KEY ENZYME IN
The Biosynthesis Of Gdp-L-Fucose
Length = 321
Score = 207 bits (527), Expect = 1e-54
Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 9/310 (2%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLLTPKKSELCLLDKDNVQAYLKEYKPTGIIHCAG 64
+ I G GMVG ++ + DV L+ + EL LLD V + + + A
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQ-RGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 65 RVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAINLASSCAYPKFAPNPLKESDL 124
+VGGIVAN + ++ +N+++ + +A + V K + L SSC YPK A P+ ES+L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL 124
Query: 125 LNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLVPCNLYGEFDKFEEKIAHMIPGL 184
L G+LEPTNE YA+AK++ +K CE + + G Y++++P NLYG D F +H+IP L
Sbjct: 125 LQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 185 IARMHTAKLKNEKEFAMWGDGTARREYLNAKDLA----RFISLAY----ENIASIPSVMN 236
+ R H A +N + +WG GT RE+L+ D+A + LA+ EN + S +N
Sbjct: 185 LRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 237 VGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVGMQQKLMDISKQRALKWELEIPLEQG 296
VG+GVD +I + + +A+V+ YKG V D SKP G +KL+D+++ L W EI LE G
Sbjct: 245 VGTGVDCTIRDLAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 297 IKEAYEYYLK 306
+ Y+++L+
Sbjct: 305 LASTYQWFLE 314
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 206 bits (524), Expect = 3e-54
Identities = 115/310 (37%), Positives = 178/310 (57%), Gaps = 9/310 (2%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLLTPKKSELCLLDKDNVQAYLKEYKPTGIIHCAG 64
+ I G GMVG ++ + DV L+ + EL LLD V + + + A
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQ-RGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 65 RVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAINLASSCAYPKFAPNPLKESDL 124
+VGGIVAN + ++ +N+++ + +A + V K + L SSC YPK A P+ ES+L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL 124
Query: 125 LNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLVPCNLYGEFDKFEEKIAHMIPGL 184
L G+LEPTNE YA+AK++ +K CE + + G Y++++P NLYG D F +H+IP L
Sbjct: 125 LQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 185 IARMHTAKLKNEKEFAMWGDGTARREYLNAKDLA----RFISLAY----ENIASIPSVMN 236
+ R H A + + +WG GT RE+L+ D+A + LA+ EN + S +N
Sbjct: 185 LRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 237 VGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVGMQQKLMDISKQRALKWELEIPLEQG 296
VG+GVD +I E + +A+V+ YKG V D SKP G +KL+D+++ L W EI LE G
Sbjct: 245 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 297 IKEAYEYYLK 306
+ Y+++L+
Sbjct: 305 LASTYQWFLE 314
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 205 bits (522), Expect = 5e-54
Identities = 114/310 (36%), Positives = 179/310 (56%), Gaps = 9/310 (2%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLLTPKKSELCLLDKDNVQAYLKEYKPTGIIHCAG 64
+ I G GMVG ++ + DV L+ + EL LLD V + + + A
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQ-RGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 65 RVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAINLASSCAYPKFAPNPLKESDL 124
+VGGIVAN + ++ +N+++ + +A + V K + L SSC YPK A P+ ES+L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL 124
Query: 125 LNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLVPCNLYGEFDKFEEKIAHMIPGL 184
L G+LEPTNE YA+A+++ +K CE + + G Y++++P NLYG D F +H+IP L
Sbjct: 125 LQGTLEPTNEPYAIARIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 185 IARMHTAKLKNEKEFAMWGDGTARREYLNAKDLA----RFISLAY----ENIASIPSVMN 236
+ R H A ++ + +WG GT RE+L+ D+A + LA+ EN + S +N
Sbjct: 185 LRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 237 VGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVGMQQKLMDISKQRALKWELEIPLEQG 296
VG+GVD +I E + +A+V+ YKG V D SKP G +KL+D+++ L W EI LE G
Sbjct: 245 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 297 IKEAYEYYLK 306
+ Y+++L+
Sbjct: 305 LASTYQWFLE 314
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 205 bits (522), Expect = 5e-54
Identities = 114/310 (36%), Positives = 179/310 (56%), Gaps = 9/310 (2%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLLTPKKSELCLLDKDNVQAYLKEYKPTGIIHCAG 64
+ I G GMVG ++ + DV L+ + EL LLD V + + + A
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQ-RGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 65 RVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAINLASSCAYPKFAPNPLKESDL 124
+VGGIVAN + ++ +N+++ + +A + V K + L +SC YPK A P+ ES+L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGASCIYPKLAKQPMAESEL 124
Query: 125 LNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLVPCNLYGEFDKFEEKIAHMIPGL 184
L G+LEPTNE YA+AK++ +K CE + + G Y++++P NLYG D F +H+IP L
Sbjct: 125 LQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 185 IARMHTAKLKNEKEFAMWGDGTARREYLNAKDLA----RFISLAY----ENIASIPSVMN 236
+ R H A ++ + +WG GT RE+L+ D+A + LA+ EN + S +N
Sbjct: 185 LRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 237 VGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVGMQQKLMDISKQRALKWELEIPLEQG 296
VG+GVD +I E + +A+V+ YKG V D SKP G +KL+D+++ L W EI LE G
Sbjct: 245 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 297 IKEAYEYYLK 306
+ Y+++L+
Sbjct: 305 LASTYQWFLE 314
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 203 bits (516), Expect = 2e-53
Identities = 114/310 (36%), Positives = 178/310 (56%), Gaps = 9/310 (2%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLLTPKKSELCLLDKDNVQAYLKEYKPTGIIHCAG 64
+ I G GMVG ++ + DV L+ + EL LLD V + + + A
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQ-RGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 65 RVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAINLASSCAYPKFAPNPLKESDL 124
+VGGIVAN + ++ +N+++ + +A + V K + L SSC YPK A P+ ES+L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL 124
Query: 125 LNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLVPCNLYGEFDKFEEKIAHMIPGL 184
L G+LEPTNE A+AK++ +K CE + + G Y++++P NLYG D F +H+IP L
Sbjct: 125 LQGTLEPTNEPEAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 185 IARMHTAKLKNEKEFAMWGDGTARREYLNAKDLA----RFISLAY----ENIASIPSVMN 236
+ R H A ++ + +WG GT RE+L+ D+A + LA+ EN + S +N
Sbjct: 185 LRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 237 VGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVGMQQKLMDISKQRALKWELEIPLEQG 296
VG+GVD +I E + +A+V+ YKG V D SKP G +KL+D+++ L W EI LE G
Sbjct: 245 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 297 IKEAYEYYLK 306
+ Y+++L+
Sbjct: 305 LASTYQWFLE 314
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1UDB| Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4-Fluoro-Alpha-D-Glucose
pdb|1UDA| Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4-Fluoro-Alpha-D-Galactose
pdb|1NAH| Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1XEL| Udp-Galactose 4-Epimerase From Escherichia Coli
pdb|1NAI| Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
Length = 338
Score = 43.5 bits (101), Expect = 3e-05
Identities = 77/344 (22%), Positives = 134/344 (38%), Gaps = 63/344 (18%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLL----TPKKSELCLLDKDN-------------- 46
+L+TG G +G +T + +N DV +L K+S L ++++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 47 --VQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAIN 104
+ L ++ +IH AG + + ++ Y N+ L L S+ + VK I
Sbjct: 63 ALMTEILHDHAIDTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 105 LASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVF------Y 158
+S+ Y P ES P Y +KL V + + + + Y
Sbjct: 122 SSSATVYGDNPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 159 KTLVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWG------DGTARREYL 212
V + G+ + + I + + IA++ + A++G DGT R+Y+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGR---RDSLAIFGNDYPTEDGTGVRDYI 234
Query: 213 NAKDLARFISLAYENIASIPSV--MNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPV 270
+ DLA +A E +A+ P V N+G+GV S VLD F K KPV
Sbjct: 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNS----------VLDVVNAFSKACGKPV 284
Query: 271 G----------MQQKLMDISK-QRALKWELEIPLEQGIKEAYEY 303
+ D SK R L W + L++ ++ + +
Sbjct: 285 NYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1UDC| Structure Of Udp-Galactose-4-Epimerase Complexed With Udp-Mannose
pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 43.5 bits (101), Expect = 3e-05
Identities = 77/344 (22%), Positives = 134/344 (38%), Gaps = 63/344 (18%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLL----TPKKSELCLLDKDN-------------- 46
+L+TG G +G +T + +N DV +L K+S L ++++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 47 --VQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAIN 104
+ L ++ +IH AG + + ++ Y N+ L L S+ + VK I
Sbjct: 63 ALMTEILHDHAIDTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 105 LASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVF------Y 158
+S+ Y P ES P Y +KL V + + + + Y
Sbjct: 122 SSSATVYGDQPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 159 KTLVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWG------DGTARREYL 212
V + G+ + + I + + IA++ + A++G DGT R+Y+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGR---RDSLAIFGNDYPTEDGTGVRDYI 234
Query: 213 NAKDLARFISLAYENIASIPSV--MNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPV 270
+ DLA +A E +A+ P V N+G+GV S VLD F K KPV
Sbjct: 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNS----------VLDVVNAFSKACGKPV 284
Query: 271 G----------MQQKLMDISK-QRALKWELEIPLEQGIKEAYEY 303
+ D SK R L W + L++ ++ + +
Sbjct: 285 NYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-
Epimerase Mutant Y299c Complexed With Udp-N-
Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 43.1 bits (100), Expect = 4e-05
Identities = 77/344 (22%), Positives = 134/344 (38%), Gaps = 63/344 (18%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLL----TPKKSELCLLDKDN-------------- 46
+L+TG G +G +T + +N DV +L K+S L ++++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 47 --VQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAIN 104
+ L ++ +IH AG + + ++ Y N+ L L S+ + VK I
Sbjct: 63 ALMTEILHDHAIDTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 105 LASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVF------Y 158
+S+ Y P ES P Y +KL V + + + + Y
Sbjct: 122 SSSATVYGDNPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 159 KTLVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWG------DGTARREYL 212
V + G+ + + I + + IA++ + A++G DGT R+Y+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGR---RDSLAIFGNDYPTEDGTGVRDYI 234
Query: 213 NAKDLARFISLAYENIASIPSV--MNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPV 270
+ DLA +A E +A+ P V N+G+GV S VLD F K KPV
Sbjct: 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNS----------VLDVVNAFSKACGKPV 284
Query: 271 G----------MQQKLMDISK-QRALKWELEIPLEQGIKEAYEY 303
+ D SK R L W + L++ ++ + +
Sbjct: 285 NYHFAPRREGDLPACWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVU| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 42.7 bits (99), Expect = 5e-05
Identities = 74/340 (21%), Positives = 135/340 (38%), Gaps = 55/340 (16%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLL----TPKKSELCLLDKDN-------------- 46
+L+TG G +G +T + +N DV +L K+S L ++++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 47 --VQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAIN 104
+ L ++ +IH AG + + ++ Y N+ L L S+ + VK I
Sbjct: 63 ALMTEILHDHAIDTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 105 LASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAK--LSVMKYCEYVSAEKGVFYKTLV 162
+S+ Y P ES P + + + L+ ++ + + + Y V
Sbjct: 122 SSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWG------DGTARREYLNAKD 216
+ G+ + + I + + IA++ + A++G DGT R+Y++ D
Sbjct: 182 GAHPSGDMGEDPQGIPNNLMPYIAQVAVGR---RDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 217 LARFISLAYENIASIPSV--MNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVG--- 271
LA +A E +A+ P V N+G+GV S VLD F K KPV
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNS----------VLDVVNAFSKACGKPVNYHF 288
Query: 272 -------MQQKLMDISK-QRALKWELEIPLEQGIKEAYEY 303
+ D SK R L W + L++ ++ + +
Sbjct: 289 APRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVS| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 42.4 bits (98), Expect = 7e-05
Identities = 76/344 (22%), Positives = 134/344 (38%), Gaps = 63/344 (18%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLL----TPKKSELCLLDKDN-------------- 46
+L+TG G +G +T + +N DV +L K+S L ++++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 47 --VQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAIN 104
+ L ++ +IH AG + + ++ Y N+ L L S+ + VK I
Sbjct: 63 ALMTEILHDHAIDTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 105 LASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVF------Y 158
+++ Y P ES P Y +KL V + + + + Y
Sbjct: 122 SSTATVYGDNPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 159 KTLVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWG------DGTARREYL 212
V + G+ + + I + + IA++ + A++G DGT R+Y+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGR---RDSLAIFGNDYPTEDGTGVRDYI 234
Query: 213 NAKDLARFISLAYENIASIPSV--MNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPV 270
+ DLA +A E +A+ P V N+G+GV S VLD F K KPV
Sbjct: 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNS----------VLDVVNAFSKACGKPV 284
Query: 271 G----------MQQKLMDISK-QRALKWELEIPLEQGIKEAYEY 303
+ D SK R L W + L++ ++ + +
Sbjct: 285 NYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVQ| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 42.4 bits (98), Expect = 7e-05
Identities = 76/344 (22%), Positives = 134/344 (38%), Gaps = 63/344 (18%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLL----TPKKSELCLLDKDN-------------- 46
+L+TG G +G +T + +N DV +L K+S L ++++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 47 --VQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAIN 104
+ L ++ +IH AG + + ++ Y N+ L L S+ + VK I
Sbjct: 63 ALMTEILHDHAIDTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 105 LASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVF------Y 158
+++ Y P ES P Y +KL V + + + + Y
Sbjct: 122 SSAATVYGDNPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 159 KTLVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWG------DGTARREYL 212
V + G+ + + I + + IA++ + A++G DGT R+Y+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGR---RDSLAIFGNDYPTEDGTGVRDYI 234
Query: 213 NAKDLARFISLAYENIASIPSV--MNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPV 270
+ DLA +A E +A+ P V N+G+GV S VLD F K KPV
Sbjct: 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNS----------VLDVVNAFSKACGKPV 284
Query: 271 G----------MQQKLMDISK-QRALKWELEIPLEQGIKEAYEY 303
+ D SK R L W + L++ ++ + +
Sbjct: 285 NYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVR| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 42.4 bits (98), Expect = 7e-05
Identities = 76/344 (22%), Positives = 134/344 (38%), Gaps = 63/344 (18%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLL----TPKKSELCLLDKDN-------------- 46
+L+TG G +G +T + +N DV +L K+S L ++++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 47 --VQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAIN 104
+ L ++ +IH AG + + ++ Y N+ L L S+ + VK I
Sbjct: 63 ALMTEILHDHAIDTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 105 LASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVF------Y 158
+++ Y P ES P Y +KL V + + + + Y
Sbjct: 122 SSAATVYGDQPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 159 KTLVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWG------DGTARREYL 212
V + G+ + + I + + IA++ + A++G DGT R+Y+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGR---RDSLAIFGNDYPTEDGTGVRDYI 234
Query: 213 NAKDLARFISLAYENIASIPSV--MNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPV 270
+ DLA +A E +A+ P V N+G+GV S VLD F K KPV
Sbjct: 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNS----------VLDVVNAFSKACGKPV 284
Query: 271 G----------MQQKLMDISK-QRALKWELEIPLEQGIKEAYEY 303
+ D SK R L W + L++ ++ + +
Sbjct: 285 NYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Z| Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
Udp-Galactose
Length = 338
Score = 41.6 bits (96), Expect = 1e-04
Identities = 73/340 (21%), Positives = 135/340 (39%), Gaps = 55/340 (16%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLL----TPKKSELCLLDKDN-------------- 46
+L+TG G +G +T + +N DV +L K+S L ++++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 47 --VQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAIN 104
+ L ++ +IH AG + + ++ Y N+ L L S+ + VK I
Sbjct: 63 ALMTEILHDHAIDTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 105 LASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAK--LSVMKYCEYVSAEKGVFYKTLV 162
+++ Y P ES P + + + L+ ++ + + + Y V
Sbjct: 122 SSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWG------DGTARREYLNAKD 216
+ G+ + + I + + IA++ + A++G DGT R+Y++ D
Sbjct: 182 GAHPSGDMGEDPQGIPNNLMPYIAQVAVGR---RDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 217 LARFISLAYENIASIPSV--MNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVG--- 271
LA +A E +A+ P V N+G+GV S VLD F K KPV
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNS----------VLDVVNAFSKACGKPVNYHF 288
Query: 272 -------MQQKLMDISK-QRALKWELEIPLEQGIKEAYEY 303
+ D SK R L W + L++ ++ + +
Sbjct: 289 APRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Y| Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
Udp-Glucose
Length = 338
Score = 41.6 bits (96), Expect = 1e-04
Identities = 73/340 (21%), Positives = 135/340 (39%), Gaps = 55/340 (16%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLL----TPKKSELCLLDKDN-------------- 46
+L+TG G +G +T + +N DV +L K+S L ++++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 47 --VQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAIN 104
+ L ++ +IH AG + + ++ Y N+ L L S+ + VK I
Sbjct: 63 ALMTEILHDHAIDTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 105 LASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAK--LSVMKYCEYVSAEKGVFYKTLV 162
+++ Y P ES P + + + L+ ++ + + + Y V
Sbjct: 122 SSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWG------DGTARREYLNAKD 216
+ G+ + + I + + IA++ + A++G DGT R+Y++ D
Sbjct: 182 GAHPSGDMGEDPQGIPNNLMPYIAQVAVGR---RDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 217 LARFISLAYENIASIPSV--MNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVG--- 271
LA +A E +A+ P V N+G+GV S VLD F K KPV
Sbjct: 239 LADGHVVAMEKLANKPGVHIYNLGAGVGNS----------VLDVVNAFSKACGKPVNYHF 288
Query: 272 -------MQQKLMDISK-QRALKWELEIPLEQGIKEAYEY 303
+ D SK R L W + L++ ++ + +
Sbjct: 289 APRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 41.6 bits (96), Expect = 1e-04
Identities = 56/278 (20%), Positives = 102/278 (36%), Gaps = 34/278 (12%)
Query: 1 MNEIILITGAYGMVGQNTALYFK--------------------------KNKPDVTLLTP 34
M E +L+TG G +G +T L + ++T +
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 35 KKSELCLLDKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSA 94
+ E+ +LD+ +Q K+Y +IH AG + L Y V NL + L
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-NLTGTIQLLEIM 119
Query: 95 LDSGVKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEK 154
GVK + +S+ Y PL E+ G P + + + C+
Sbjct: 120 KAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179
Query: 155 GVFYKTLVPCNLY--GEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAM---WGDGTARR 209
V + P + G + + I + + ++++ + + F DGT R
Sbjct: 180 AVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239
Query: 210 EYLNAKDLARFISLAYENIASIPS--VMNVGSGVDYSI 245
+Y++ DLA+ A + + N+G+G YS+
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSV 277
>pdb|1KVT| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 41.2 bits (95), Expect = 2e-04
Identities = 76/344 (22%), Positives = 133/344 (38%), Gaps = 63/344 (18%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDVTLL----TPKKSELCLLDKDN-------------- 46
+L+TG G +G +T + +N DV +L K+S L ++++
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 47 --VQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKAIN 104
+ L ++ +IH AG + + ++ Y N+ L L S+ + VK I
Sbjct: 63 ALMTEILHDHAIDTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 105 LASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVF------Y 158
+ + Y P ES P Y +KL V + + + + Y
Sbjct: 122 SSVATVYGDNPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 159 KTLVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWG------DGTARREYL 212
V + G+ + + I + + IA++ + A++G DGT R+Y+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGR---RDSLAIFGNDYPTEDGTGVRDYI 234
Query: 213 NAKDLARFISLAYENIASIPSV--MNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPV 270
+ DLA +A E +A+ P V N+G+GV S VLD F K KPV
Sbjct: 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNS----------VLDVVNAFSKACGKPV 284
Query: 271 G----------MQQKLMDISK-QRALKWELEIPLEQGIKEAYEY 303
+ D SK R L W + L++ ++ + +
Sbjct: 285 NYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 40.4 bits (93), Expect = 3e-04
Identities = 56/278 (20%), Positives = 102/278 (36%), Gaps = 34/278 (12%)
Query: 1 MNEIILITGAYGMVGQNTALYFK--------------------------KNKPDVTLLTP 34
M E +L+TG G +G +T L + ++T +
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 35 KKSELCLLDKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSA 94
+ E+ +LD+ +Q K+Y +IH AG + L Y V NL + L
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-NLTGTIQLLEIM 119
Query: 95 LDSGVKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEK 154
GVK + +S+ Y PL E+ G P + + + C+
Sbjct: 120 KAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179
Query: 155 GVFYKTLVPCNLY--GEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAM---WGDGTARR 209
V + P + G + + I + + ++++ + + F DGT R
Sbjct: 180 VVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239
Query: 210 EYLNAKDLARFISLAYENIASIPS--VMNVGSGVDYSI 245
+Y++ DLA+ A + + N+G+G YS+
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSV 277
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 40.4 bits (93), Expect = 3e-04
Identities = 56/278 (20%), Positives = 102/278 (36%), Gaps = 34/278 (12%)
Query: 1 MNEIILITGAYGMVGQNTALYFK--------------------------KNKPDVTLLTP 34
M E +L+TG G +G +T L + ++T +
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 35 KKSELCLLDKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSA 94
+ E+ +LD+ +Q K+Y +IH AG + L Y V NL + L
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRV-NLTGTIQLLEIM 119
Query: 95 LDSGVKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEK 154
GVK + +S+ Y PL E+ G P + + + C+
Sbjct: 120 KAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179
Query: 155 GVFYKTLVPCNLY--GEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAM---WGDGTARR 209
V + P + G + + I + + ++++ + + F DGT R
Sbjct: 180 VVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239
Query: 210 EYLNAKDLARFISLAYENIASIPS--VMNVGSGVDYSI 245
+Y++ DLA+ A + + N+G+G YS+
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSV 277
>pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutant K300r Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 27.7 bits (60), Expect = 1.7
Identities = 28/134 (20%), Positives = 54/134 (39%), Gaps = 8/134 (5%)
Query: 94 ALDSGVKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCE----- 148
A SG A N + ++P ++P ES +N S + N+ Y + ++ +
Sbjct: 91 AAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNS-DYGNDRYRVQNCELVGLADLDTAS 149
Query: 149 -YVSAEKGVFYKTLVPCNLYG-EFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGT 206
YV + L + G FD + A I L+A+++ + + ++ G+
Sbjct: 150 NYVQNTIAAYINDLQAIGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVIDQGGEAV 209
Query: 207 ARREYLNAKDLARF 220
EYL+ + F
Sbjct: 210 GASEYLSTGLVTEF 223
>pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
Length = 348
Score = 27.7 bits (60), Expect = 1.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 5 ILITGAYGMVGQNTALYFKKNKPDV 29
I++TG G +G N Y N PDV
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDV 31
>pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutant K300q Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 27.7 bits (60), Expect = 1.7
Identities = 28/134 (20%), Positives = 54/134 (39%), Gaps = 8/134 (5%)
Query: 94 ALDSGVKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCE----- 148
A SG A N + ++P ++P ES +N S + N+ Y + ++ +
Sbjct: 91 AAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNS-DYGNDRYRVQNCELVGLADLDTAS 149
Query: 149 -YVSAEKGVFYKTLVPCNLYG-EFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGT 206
YV + L + G FD + A I L+A+++ + + ++ G+
Sbjct: 150 NYVQNTIAAYINDLQAIGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVIDQGGEAV 209
Query: 207 ARREYLNAKDLARF 220
EYL+ + F
Sbjct: 210 GASEYLSTGLVTEF 223
>pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic Alpha-Amylase, Comii
(Pseudo Tri-Saccharide From Bayer) And Tris (2-Amino-2-
Hydroxymethyl-Propane-1,3-Diol)
pdb|1L0P|A Chain A, Crystal Structure Analysis Of The Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis And Nitrate
pdb|1G94|A Chain A, Crystal Structure Analysis Of The Ternary Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis In Complex With A Hepta-Saccharide And A
Tris Molecule
Length = 448
Score = 27.7 bits (60), Expect = 1.7
Identities = 28/134 (20%), Positives = 54/134 (39%), Gaps = 8/134 (5%)
Query: 94 ALDSGVKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCE----- 148
A SG A N + ++P ++P ES +N S + N+ Y + ++ +
Sbjct: 91 AAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNS-DYGNDRYRVQNCELVGLADLDTAS 149
Query: 149 -YVSAEKGVFYKTLVPCNLYG-EFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGT 206
YV + L + G FD + A I L+A+++ + + ++ G+
Sbjct: 150 NYVQNTIAAYINDLQAIGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVIDQGGEAV 209
Query: 207 ARREYLNAKDLARF 220
EYL+ + F
Sbjct: 210 GASEYLSTGLVTEF 223
>pdb|1AQM| Alpha-Amylase From Alteromonas Haloplanctis Complexed With Tris
pdb|1AQH| Alpha-Amylase From Alteromonas Haloplanctis
pdb|1B0I|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
Length = 453
Score = 27.7 bits (60), Expect = 1.7
Identities = 28/134 (20%), Positives = 54/134 (39%), Gaps = 8/134 (5%)
Query: 94 ALDSGVKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCE----- 148
A SG A N + ++P ++P ES +N S + N+ Y + ++ +
Sbjct: 91 AAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNS-DYGNDRYRVQNCELVGLADLDTAS 149
Query: 149 -YVSAEKGVFYKTLVPCNLYG-EFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGT 206
YV + L + G FD + A I L+A+++ + + ++ G+
Sbjct: 150 NYVQNTIAAYINDLQAIGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQEVIDQGGEAV 209
Query: 207 ARREYLNAKDLARF 220
EYL+ + F
Sbjct: 210 GASEYLSTGLVTEF 223
>pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 26.9 bits (58), Expect = 3.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 238 GSGVDYSIEEYYEKVAQV---LDYKGVFVKDLSKP 269
G+G + + YY K+AQ+ LDY + DL+ P
Sbjct: 185 GAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGP 219
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladiu
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladiu
Length = 499
Score = 26.9 bits (58), Expect = 3.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 238 GSGVDYSIEEYYEKVAQV---LDYKGVFVKDLSKP 269
G+G + + YY K+AQ+ LDY + DL+ P
Sbjct: 185 GAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGP 219
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 26.9 bits (58), Expect = 3.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 238 GSGVDYSIEEYYEKVAQV---LDYKGVFVKDLSKP 269
G+G + + YY K+AQ+ LDY + DL+ P
Sbjct: 184 GAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGP 218
>pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
Length = 499
Score = 26.9 bits (58), Expect = 3.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 238 GSGVDYSIEEYYEKVAQV---LDYKGVFVKDLSKP 269
G+G + + YY K+AQ+ LDY + DL+ P
Sbjct: 185 GAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGP 219
>pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 26.9 bits (58), Expect = 3.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 238 GSGVDYSIEEYYEKVAQV---LDYKGVFVKDLSKP 269
G+G + + YY K+AQ+ LDY + DL+ P
Sbjct: 185 GAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGP 219
>pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 26.9 bits (58), Expect = 3.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 238 GSGVDYSIEEYYEKVAQV---LDYKGVFVKDLSKP 269
G+G + + YY K+AQ+ LDY + DL+ P
Sbjct: 185 GAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGP 219
>pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 26.9 bits (58), Expect = 3.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 238 GSGVDYSIEEYYEKVAQV---LDYKGVFVKDLSKP 269
G+G + + YY K+AQ+ LDY + DL+ P
Sbjct: 184 GAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGP 218
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 26.6 bits (57), Expect = 3.9
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Query: 178 AHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFI 221
A++IP L+ + A+ K +KE A W A L D+ R++
Sbjct: 294 ANLIPPLVKLLEVAEYKTKKE-ACWAISNASSGGLQRPDIIRYL 336
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 26.6 bits (57), Expect = 3.9
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Query: 178 AHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFI 221
A++IP L+ + A+ K +KE A W A L D+ R++
Sbjct: 294 ANLIPPLVKLLEVAEYKTKKE-ACWAISNASSGGLQRPDIIRYL 336
>pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
Length = 361
Score = 25.8 bits (55), Expect = 6.6
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 197 KEFAMWGDGTARREYLNAKDLARFISLAYENIASIPSVMNVGSGVDYSIEEYYEKVAQVL 256
K ++G G R++L +D AR + + N+G + + + +L
Sbjct: 219 KPLPIYGKGDQIRDWLYVEDHARALHMVVTE-GKAGETYNIGGHNEKKNLDVVFTICDLL 277
Query: 257 D--------YKGVFVKDLSKPVGMQQKLMDISK-QRALKWELEIPLEQGIKEAYEYYL 305
D Y+ +P ++ +D K R L W+ E GI++ E+YL
Sbjct: 278 DEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYL 335
>pdb|1KXH|A Chain A, Crystal Structure Of The Complex Between An Inactive
Mutant Of Psychrophilic Alpha-Amylase (D174n) And
Acarbose
Length = 448
Score = 25.8 bits (55), Expect = 6.6
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 94 ALDSGVKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCE----- 148
A SG A N + ++P ++P ES +N S + N+ Y + ++ +
Sbjct: 91 AAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNS-DYGNDRYRVQNCELVGLADLDTAS 149
Query: 149 -YVSAEKGVFYKTLVPCNLYG-EFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGT 206
YV + L + G F+ + A I L+A+++ + + ++ G+
Sbjct: 150 NYVQNTIAAYINDLQAIGVKGFRFNASKHVAASDIQSLMAKVNGSPVVFQEVIDQGGEAV 209
Query: 207 ARREYLNAKDLARF 220
EYL+ + F
Sbjct: 210 GASEYLSTGLVTEF 223
>pdb|1BEV|4 Chain 4, Bovine Enterovirus Vg-5-27
Length = 68
Score = 25.8 bits (55), Expect = 6.6
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 238 GSGVDYSIEEYYEKVAQVLDYKGVFVKDLSKPVGMQQKLMDISKQRAL 285
GS ++Y+ YY A K F +D SK Q + D+ K+ A+
Sbjct: 21 GSTINYNNINYYSHAASAAQNKQDFTQDPSK---FTQPIADVIKETAV 65
>pdb|2ASR| The Three-Dimensional Structure Of The Aspartate Receptor From
Escherichia Coli
Length = 142
Score = 25.8 bits (55), Expect = 6.6
Identities = 7/34 (20%), Positives = 20/34 (58%)
Query: 225 YENIASIPSVMNVGSGVDYSIEEYYEKVAQVLDY 258
++++A +P ++ +D + YY + +++DY
Sbjct: 70 FKSMAPLPEMVATSRNIDEKYKNYYTALTELIDY 103
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,827,567
Number of Sequences: 13198
Number of extensions: 78162
Number of successful extensions: 251
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 38
length of query: 310
length of database: 2,899,336
effective HSP length: 88
effective length of query: 222
effective length of database: 1,737,912
effective search space: 385816464
effective search space used: 385816464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)