BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645073|ref|NP_207243.1| hypothetical protein
[Helicobacter pylori 26695]
         (61 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1BOB|    Histone Acetyltransferase Hat1 From Saccharomyc...    27  0.58
pdb|1CC1|L  Chain L, Crystal Structure Of A Reduced, Active ...    24  3.8
pdb|1K04|A  Chain A, Crystal Structure Of The Focal Adhesion...    24  3.8
pdb|1K40|A  Chain A, Crystal Structure Of The Fat Domain Of ...    23  4.9

>pdb|1BOB|   Histone Acetyltransferase Hat1 From Saccharomyces Cerevisiae In
           Complex With Acetyl Coenzyme A
          Length = 320

 Score = 26.6 bits (57), Expect = 0.58
 Identities = 12/32 (37%), Positives = 17/32 (52%)

Query: 28  YKNFLVKDLPKLVHREVEIVMKLLFEINEVVD 59
           YK+ LV D  + +HR V+I   L  E    +D
Sbjct: 137 YKSSLVDDFARRMHRRVQIFSLLFIEAANYID 168



>pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active Form Of The
           Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
          Length = 498

 Score = 23.9 bits (50), Expect = 3.8
 Identities = 15/43 (34%), Positives = 22/43 (50%)

Query: 11  ISQKYVIPKGFDPTNKEYKNFLVKDLPKLVHREVEIVMKLLFE 53
           I  K VI  G  P + +YK FL+K    +  ++ E   KL+ E
Sbjct: 243 IGWKNVIAFGVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKE 285



>pdb|1K04|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
           Of Focal Adhesion Kinase
 pdb|1K05|B Chain B, Crystal Structure Of The Focal Adhesion Targeting Domain
           Of Focal Adhesion Kinase
 pdb|1K05|C Chain C, Crystal Structure Of The Focal Adhesion Targeting Domain
           Of Focal Adhesion Kinase
 pdb|1K05|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
           Of Focal Adhesion Kinase
          Length = 162

 Score = 23.9 bits (50), Expect = 3.8
 Identities = 10/26 (38%), Positives = 18/26 (68%), Gaps = 1/26 (3%)

Query: 36  LPKLVHREVEIVMKLL-FEINEVVDR 60
           LP   HRE+E+  KLL  ++ E++++
Sbjct: 85  LPASTHREIEMAQKLLNSDLGELINK 110



>pdb|1K40|A Chain A, Crystal Structure Of The Fat Domain Of Focal Adhesion
          Kinase
          Length = 126

 Score = 23.5 bits (49), Expect = 4.9
 Identities = 10/26 (38%), Positives = 17/26 (64%), Gaps = 1/26 (3%)

Query: 36 LPKLVHREVEIVMKLL-FEINEVVDR 60
          LP   HRE+E+  KLL  ++ E++ +
Sbjct: 55 LPASTHREIEMAQKLLNSDLGELISK 80



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.322    0.144    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,573
Number of Sequences: 13198
Number of extensions: 10676
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 2,899,336
effective HSP length: 37
effective length of query: 24
effective length of database: 2,411,010
effective search space: 57864240
effective search space used: 57864240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)