BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645074|ref|NP_207244.1| hypothetical protein
[Helicobacter pylori 26695]
         (259 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1I12|D  Chain D, Crystal Structure Of Saccharomyces Cere...    25  8.9
pdb|1I1D|D  Chain D, Crystal Structure Of Yeast Gna1 Bound T...    25  8.9

>pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
          Complexed With Accoa
 pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
          Complexed With Accoa
 pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
          Complexed With Accoa
 pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
          Complexed With Accoa
          Length = 160

 Score = 25.0 bits (53), Expect = 8.9
 Identities = 11/55 (20%), Positives = 27/55 (49%)

Query: 43 GYVGCKLFKKILNFPSNTTFFGGTGCKKLMELLSEIVIDSRSSKIALNRHYALTR 97
          G +  + F K++ + +  T +     KK+M+    +++D R+  +A   +  + R
Sbjct: 32 GTITPESFCKLIKYWNEATVWNDNEDKKIMQYNPMVIVDKRTETVAATGNIIIER 86



>pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And
          Glnac-6p
 pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And
          Glnac-6p
 pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And
          Glnac-6p
 pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And
          Glnac-6p
          Length = 161

 Score = 25.0 bits (53), Expect = 8.9
 Identities = 11/55 (20%), Positives = 27/55 (49%)

Query: 43 GYVGCKLFKKILNFPSNTTFFGGTGCKKLMELLSEIVIDSRSSKIALNRHYALTR 97
          G +  + F K++ + +  T +     KK+M+    +++D R+  +A   +  + R
Sbjct: 33 GTITPESFCKLIKYWNEATVWNDNEDKKIMQYNPMVIVDKRTETVAATGNIIIER 87



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.326    0.142    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,433,128
Number of Sequences: 13198
Number of extensions: 56461
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 2
length of query: 259
length of database: 2,899,336
effective HSP length: 86
effective length of query: 173
effective length of database: 1,764,308
effective search space: 305225284
effective search space used: 305225284
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)