BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645076|ref|NP_207246.1| hypothetical protein
[Helicobacter pylori 26695]
(128 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 27 0.72
pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexe... 25 2.1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd4... 25 2.1
pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonucle... 25 2.7
pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Pl... 25 2.7
pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-R... 24 6.1
pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus ... 24 6.1
pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoen... 24 6.1
pdb|2ILK| Crystal Structure Of Human Interleukin-10 At 1.... 23 8.0
pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase... 23 8.0
pdb|1LK3|A Chain A, Engineered Human Interleukin-10 Monomer... 23 8.0
pdb|1ILK| Interleukin-10 23 8.0
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 26.9 bits (58), Expect = 0.72
Identities = 30/112 (26%), Positives = 51/112 (44%), Gaps = 22/112 (19%)
Query: 31 HNDLGLNAIEKCALKLKESGVKDEE--------LKGFLGFGGELDL----------LEPI 72
H D+G++ EK K E+ KDEE LK + ++++ E +
Sbjct: 4 HGDVGMHVKEKEKNK-DENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKL 62
Query: 73 LEKIETKTLEEYKKIHAHFYYNLINQEFLHFVDLERVRAIDGKEVKCPTAKD 124
LEK+ + LE YK I Y +++ + + LE + + D K++K KD
Sbjct: 63 LEKVPSDVLEMYKAIGGKIY--IVDGDITKHISLEAL-SEDKKKIKDIYGKD 111
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
Length = 396
Score = 25.4 bits (54), Expect = 2.1
Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 4/43 (9%)
Query: 11 VCDKHLLIPCRIYCVELEIRHN-DLGLNAIEKCALKLKESGVK 52
V D +IP R++ + + ++HN D+ L A+ + LKE +K
Sbjct: 190 VQDNGAVIPVRVHTIVISVQHNEDITLEAMREA---LKEQVIK 229
>pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 25.4 bits (54), Expect = 2.1
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 69 LEPILEKIETKTLEEYKKIHAHFYYNLINQEFLHFVDLERVRAIDGKEVKC 119
+ P L ++++++ + K + YY L N +D+E +++D V C
Sbjct: 18 IPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 68
>pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 25.0 bits (53), Expect = 2.7
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 7 ENDSVCDKHLLIPCRIYCVELEIRHNDLGLNAIEKCALKLKES-GVKDEELKGFL 60
EN +K +L I + I ND+ +NA K A L E ++D+E++ ++
Sbjct: 57 ENLGYVEKRILEAEEINQLXNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYI 111
>pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
Length = 183
Score = 25.0 bits (53), Expect = 2.7
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 46 LKESGVKDEELKGFLGFGGELDLLEPILEKIETKTLEEYK--KIHAHFYYNLINQEFLHF 103
+++S VK + ++G L FG E + P + I + YK KI + + EF H
Sbjct: 80 VEQSLVKLKLIEGCLSFGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHL 139
Query: 104 ---VDLERVRAIDGKEVK 118
+ +++ +D K+V+
Sbjct: 140 NGTLFIDKXTQVDKKKVR 157
>pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1118
Score = 23.9 bits (50), Expect = 6.1
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 26 ELEIRHNDLGLNAIEKCALKLKESGVKDEELKGFLGFGGEL 66
E+E R LG I + L E+ ++D + +G + G E+
Sbjct: 708 EIEARDTKLGPERITRDIPHLSEAALRDLDEEGIVRIGAEV 748
>pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1119
Score = 23.9 bits (50), Expect = 6.1
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 26 ELEIRHNDLGLNAIEKCALKLKESGVKDEELKGFLGFGGEL 66
E+E R LG I + L E+ ++D + +G + G E+
Sbjct: 709 EIEARDTKLGPERITRDIPHLSEAALRDLDEEGIVRIGAEV 749
>pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|L Chain L, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|C Chain C, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1118
Score = 23.9 bits (50), Expect = 6.1
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 26 ELEIRHNDLGLNAIEKCALKLKESGVKDEELKGFLGFGGEL 66
E+E R LG I + L E+ ++D + +G + G E+
Sbjct: 708 EIEARDTKLGPERITRDIPHLSEAALRDLDEEGIVRIGAEV 748
>pdb|2ILK| Crystal Structure Of Human Interleukin-10 At 1.6 Angstroms
Resolution
pdb|1J7V|L Chain L, Human Il-10 IL-10r1 Complex
pdb|1INR| Cytokine Synthesis
Length = 160
Score = 23.5 bits (49), Expect = 8.0
Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 2/47 (4%)
Query: 44 LKLKESGVKDEELKGFLGFGGELDLLEPILEKIETKTLEEYKKIHAH 90
L LKES ++D KG+LG ++++ LE++ + + I AH
Sbjct: 46 LLLKESLLED--FKGYLGCQALSEMIQFYLEEVMPQAENQDPDIKAH 90
>pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1119
Score = 23.5 bits (49), Expect = 8.0
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 26 ELEIRHNDLGLNAIEKCALKLKESGVKDEELKGFLGFGGEL 66
E+E R LG I + L E+ ++D + +G + G E+
Sbjct: 709 EIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEV 749
>pdb|1LK3|A Chain A, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
pdb|1LK3|B Chain B, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
Length = 160
Score = 23.5 bits (49), Expect = 8.0
Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 2/47 (4%)
Query: 44 LKLKESGVKDEELKGFLGFGGELDLLEPILEKIETKTLEEYKKIHAH 90
L LKES ++D KG+LG ++++ LE++ + + I AH
Sbjct: 40 LLLKESLLED--FKGYLGCQALSEMIQFYLEEVMPQAENQDPDIKAH 84
>pdb|1ILK| Interleukin-10
Length = 151
Score = 23.5 bits (49), Expect = 8.0
Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 2/47 (4%)
Query: 44 LKLKESGVKDEELKGFLGFGGELDLLEPILEKIETKTLEEYKKIHAH 90
L LKES ++D KG+LG ++++ LE++ + + I AH
Sbjct: 37 LLLKESLLED--FKGYLGCQALSEMIQFYLEEVMPQAENQDPDIKAH 81
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.142 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 803,591
Number of Sequences: 13198
Number of extensions: 31048
Number of successful extensions: 48
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 12
length of query: 128
length of database: 2,899,336
effective HSP length: 78
effective length of query: 50
effective length of database: 1,869,892
effective search space: 93494600
effective search space used: 93494600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)