BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645078|ref|NP_207248.1| hypothetical protein
[Helicobacter pylori 26695]
         (44 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1I1I|P  Chain P, Neurolysin (Endopeptidase 24.16) Crysta...    24  3.2
pdb|1MDY|A  Chain A, Myod Basic-Helix-Loop-Helix (Bhlh) Doma...    24  4.1
pdb|1P32|A  Chain A, Crystal Structure Of Human P32, A Dough...    23  7.0

>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
          Length = 681

 Score = 24.3 bits (51), Expect = 3.2
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 4   NEELELRARETELDKRVAELDKREKQLRKDI 34
           + + E+RA  TE DK+++  D  E  +R+D+
Sbjct: 90  SSDREVRAASTEADKKLSRFD-IEMSMREDV 119



>pdb|1MDY|A Chain A, Myod Basic-Helix-Loop-Helix (Bhlh) Domain (Residues 102
          - 166) Mutant With Cys 135 Replaced By Ser (C135s)
          Complexed With Dna
          (5'-D(TpCpApApCpApGpCpTpGpTpTpGpA)-3')
          Length = 68

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 11/36 (30%), Positives = 21/36 (57%)

Query: 7  LELRARETELDKRVAELDKREKQLRKDIDAFKQEKK 42
          +EL+ + T  D+R A   +  ++L K  +AF+  K+
Sbjct: 1  MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKR 36



>pdb|1P32|A Chain A, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
          Mitochondrial Matrix Protein
 pdb|1P32|C Chain C, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
          Mitochondrial Matrix Protein
 pdb|1P32|B Chain B, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
          Mitochondrial Matrix Protein
          Length = 209

 Score = 23.1 bits (48), Expect = 7.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 1  MSGNEELELRARETELDKRVA 21
          MSG  ELEL   E +L ++VA
Sbjct: 32 MSGGWELELNGTEAKLVRKVA 52



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.312    0.132    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,262
Number of Sequences: 13198
Number of extensions: 5323
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 3
length of query: 44
length of database: 2,899,336
effective HSP length: 20
effective length of query: 24
effective length of database: 2,635,376
effective search space: 63249024
effective search space used: 63249024
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)