BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645079|ref|NP_207249.1| hypothetical protein
[Helicobacter pylori 26695]
(94 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 35 0.002
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 33 0.007
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 32 0.015
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 31 0.019
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 29 0.074
pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase... 28 0.21
pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa 27 0.37
pdb|1EX4|A Chain A, Hiv-1 Integrase Catalytic Core And C-Te... 27 0.48
pdb|1EZJ|A Chain A, Crystal Structure Of The Multimerizatio... 27 0.48
pdb|1SFC|C Chain C, Neuronal Synaptic Fusion Complex >gi|67... 26 0.62
pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprote... 26 0.62
pdb|1K6Y|B Chain B, Crystal Structure Of A Two-Domain Fragm... 26 0.62
pdb|1QGH|A Chain A, The X-Ray Structure Of The Unusual Dode... 25 1.1
pdb|1B92|A Chain A, Mobility Of An Hiv-1 Integrase Active S... 25 1.4
pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In... 25 1.4
pdb|1B9F|A Chain A, Mobility Of An Hiv-1 Integrase Active S... 25 1.4
pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicu... 25 1.4
pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In... 25 1.4
pdb|1EXQ|A Chain A, Crystal Structure Of The Hiv-1 Integras... 25 1.4
pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZI... 25 1.4
pdb|1BIZ|A Chain A, Hiv-1 Integrase Core Domain >gi|3660035... 25 1.8
pdb|1QS4|B Chain B, Core Domain Of Hiv-1 Integrase Comlexed... 25 1.8
pdb|1BIU|A Chain A, Hiv-1 Integrase Core Domain Complexed W... 25 1.8
pdb|1BIS|B Chain B, Hiv-1 Integrase Core Domain >gi|3660029... 25 1.8
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Co... 25 1.8
pdb|1B9D|A Chain A, Mobility Of An Hiv-1 Integrase Active S... 25 1.8
pdb|1HYV|A Chain A, Hiv Integrase Core Domain Complexed Wit... 25 1.8
pdb|1ITG| Hiv-1 Integrase (Catalytic Domain Comprising Re... 25 1.8
pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj B... 24 2.4
pdb|1BHL| Cacodylated Catalytic Domain Of Hiv-1 Integrase 24 2.4
pdb|1CXZ|B Chain B, Crystal Structure Of Human Rhoa Complex... 24 2.4
pdb|1BI4|B Chain B, Catalytic Domain Of Hiv-1 Integrase 24 2.4
pdb|2ITG| Catalytic Domain Of Hiv-1 Integrase: Ordered Ac... 24 2.4
pdb|1BL3|C Chain C, Catalytic Domain Of Hiv-1 Integrase >gi... 24 2.4
pdb|1GPD|G Chain G, D-Glyceraldehyde-3-Phosphate Dehydrogen... 24 3.1
pdb|4GPD|1 Chain 1, Apo-D-Gyceraldehyde-3-Phosphate Dehydro... 24 3.1
pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovin... 24 3.1
pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals ... 23 4.0
pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin... 23 4.0
pdb|1JTH|C Chain C, Crystal Structure And Biophysical Prope... 23 4.0
pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey D... 23 4.0
pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Inf... 23 5.3
pdb|1OIS| Yeast Dna Topoisomerase I, N-Terminal Fragment 23 5.3
pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free E... 23 5.3
pdb|1HS7|A Chain A, Vam3p N-Terminal Domain Solution Structure 23 5.3
pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamat... 23 5.3
pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Co... 23 6.9
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-T... 23 6.9
pdb|1FB1|A Chain A, Crystal Structure Of Human Gtp Cyclohyd... 22 9.0
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 34.7 bits (78), Expect = 0.002
Identities = 24/94 (25%), Positives = 49/94 (51%), Gaps = 6/94 (6%)
Query: 7 SKQLQEQQESLNKDYRKKLESIKERSDRLESDLK--TQFDAQLEKWEQNFKGYEQQLTDI 64
+K+ Q++ E+ K+ +K + E + L+ L+ T+ A+ E+ +Q+L +I
Sbjct: 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928
Query: 65 LNER----EQLDLDQQRLNAQKQALENHMKQREE 94
L+E E+ + Q+L A+K+ ++ M EE
Sbjct: 929 LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962
Score = 30.0 bits (66), Expect = 0.043
Identities = 18/94 (19%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 6 ISKQLQEQQE--SLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQ---NFKGYEQQ 60
+ ++LQ + E + ++ R +L + K+ + + +++ + + + E+ +Q K +QQ
Sbjct: 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Query: 61 LTDILNEREQLDLDQQRLNAQKQALENHMKQREE 94
+ D+ + E+ + +Q+L +K + +K+ E+
Sbjct: 957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED 990
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 32.7 bits (73), Expect = 0.007
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 8 KQLQEQQESLNKDYRKKLESIKERSDRLES-----DLKTQFDAQLEKWEQNFKGYEQ 59
K+L E+++ LNKD K L+ I++R + ++ +L+ Q DA +K E+ + E+
Sbjct: 250 KELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEE 306
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 31.6 bits (70), Expect = 0.015
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 4 ETISKQLQEQQESLNKDYR-------KKLESIKERSDRLESDLKTQFDAQLEKWEQNFKG 56
E SKQL+++ SL K + K E++K+ ++LE K DA+ + N +
Sbjct: 33 EDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRR- 91
Query: 57 YEQQLTDILNEREQLDLDQQRLNAQKQALENHMKQREE 94
I E+LD Q+RL Q LE K +E
Sbjct: 92 -------IQLVEEELDRAQERLATALQKLEEAEKAADE 122
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 31.2 bits (69), Expect = 0.019
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 4 ETISKQLQEQQESLNKDYR-------KKLESIKERSDRLESDLKTQFDAQLEKWEQNFKG 56
E SKQL+++ SL K + K E++K+ ++LE K DA+ + N +
Sbjct: 33 EDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRR- 91
Query: 57 YEQQLTDILNEREQLDLDQQRLNAQKQALENHMKQREE 94
I E+LD Q+RL Q LE K +E
Sbjct: 92 -------IQLFEEELDRAQERLATALQKLEEAEKAADE 122
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 29.3 bits (64), Expect = 0.074
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 6 ISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWE 51
I K+L+E +E L + ++++ + SDR + L+ Q + EK E
Sbjct: 636 IQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVE 681
>pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
pdb|1IK9|B Chain B, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
Length = 213
Score = 27.7 bits (60), Expect = 0.21
Identities = 18/73 (24%), Positives = 36/73 (48%), Gaps = 4/73 (5%)
Query: 7 SKQLQEQQESLNKDYRK---KLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTD 63
++ LQ++ E L +D+ + E + LE+DL +F L + + + +L +
Sbjct: 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLN 200
Query: 64 ILNEREQLDLDQQ 76
ERE+ D+ Q+
Sbjct: 201 AAQEREK-DIKQE 212
>pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa
Length = 303
Score = 26.9 bits (58), Expect = 0.37
Identities = 11/41 (26%), Positives = 24/41 (57%)
Query: 4 ETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFD 44
+ I+KQL + + + Y K L+ ++ D+L+ + K +F+
Sbjct: 146 KNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFN 186
>pdb|1EX4|A Chain A, Hiv-1 Integrase Catalytic Core And C-Terminal Domain
pdb|1EX4|B Chain B, Hiv-1 Integrase Catalytic Core And C-Terminal Domain
Length = 239
Score = 26.6 bits (57), Expect = 0.48
Identities = 17/81 (20%), Positives = 41/81 (49%), Gaps = 6/81 (7%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDILN 66
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 97 QSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII- 155
Query: 67 EREQLDLDQQRLNAQKQALEN 87
D+ + L Q ++N
Sbjct: 156 ---ATDIQTKELQKQITKIQN 173
>pdb|1EZJ|A Chain A, Crystal Structure Of The Multimerization Domain Of The
Phosphoprotein From Sendai Virus
Length = 115
Score = 26.6 bits (57), Expect = 0.48
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 8 KQLQEQQESLNKDYRKKLESIKERSDRLESDLKT 41
KQ+QE ES Y++ E KE++ L S+L T
Sbjct: 76 KQIQESVESFRDIYKRFSEYQKEQNSLLMSNLST 109
>pdb|1SFC|C Chain C, Neuronal Synaptic Fusion Complex
pdb|1SFC|K Chain K, Neuronal Synaptic Fusion Complex
pdb|1SFC|G Chain G, Neuronal Synaptic Fusion Complex
Length = 83
Score = 26.2 bits (56), Expect = 0.62
Identities = 17/75 (22%), Positives = 36/75 (47%)
Query: 20 DYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILNEREQLDLDQQRLN 79
D R +LE ++ R+D+L + L+ E++ + L + + EQLD ++ +N
Sbjct: 6 DMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMN 65
Query: 80 AQKQALENHMKQREE 94
Q ++ K ++
Sbjct: 66 HINQDMKEAEKNLKD 80
>pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|B Chain B, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|C Chain C, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|D Chain D, Crystal Structure Of Human Apolipoprotein A-I
Length = 201
Score = 26.2 bits (56), Expect = 0.62
Identities = 13/61 (21%), Positives = 30/61 (48%), Gaps = 7/61 (11%)
Query: 10 LQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILNERE 69
L+++ E L ++ K LE +K + D + +KW++ + Y Q++ + E +
Sbjct: 33 LEKETEGLRQEMSKDLEEVKAKVQPYLDDFQ-------KKWQEEMELYRQKVEPLRAELQ 85
Query: 70 Q 70
+
Sbjct: 86 E 86
>pdb|1K6Y|B Chain B, Crystal Structure Of A Two-Domain Fragment Of Hiv-1
Integrase
pdb|1K6Y|A Chain A, Crystal Structure Of A Two-Domain Fragment Of Hiv-1
Integrase
pdb|1K6Y|C Chain C, Crystal Structure Of A Two-Domain Fragment Of Hiv-1
Integrase
pdb|1K6Y|D Chain D, Crystal Structure Of A Two-Domain Fragment Of Hiv-1
Integrase
Length = 288
Score = 26.2 bits (56), Expect = 0.62
Identities = 17/81 (20%), Positives = 41/81 (49%), Gaps = 6/81 (7%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDILN 66
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 146 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII- 204
Query: 67 EREQLDLDQQRLNAQKQALEN 87
D+ + L Q ++N
Sbjct: 205 ---ATDIQTKELQKQITKIQN 222
>pdb|1QGH|A Chain A, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|B Chain B, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|C Chain C, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|D Chain D, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|E Chain E, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|F Chain F, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|G Chain G, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|H Chain H, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|I Chain I, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|J Chain J, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|K Chain K, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|L Chain L, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site
Length = 156
Score = 25.4 bits (54), Expect = 1.1
Identities = 12/55 (21%), Positives = 27/55 (48%)
Query: 3 LETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGY 57
++ + + L E L +Y++ +E + D + +D+ F A ++K FK +
Sbjct: 95 MDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAF 149
>pdb|1B92|A Chain A, Mobility Of An Hiv-1 Integrase Active Site Loop Is
Correlated With Catalytic Activity
Length = 163
Score = 25.0 bits (53), Expect = 1.4
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 97 QSQAVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII 155
>pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1 Native
Crystals
pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKY|B Chain B, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
Length = 219
Score = 25.0 bits (53), Expect = 1.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQ 59
Q + Q + L RK++E E D+L +D KT ++ L E KG ++
Sbjct: 146 QTRNQGDHLLHSTRKQVE---EAGDKLPADDKTAIESALTALETALKGEDK 193
>pdb|1B9F|A Chain A, Mobility Of An Hiv-1 Integrase Active Site Loop Is
Correlated With Catalytic Activity
Length = 163
Score = 25.0 bits (53), Expect = 1.4
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 97 QSQAVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII 155
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 25.0 bits (53), Expect = 1.4
Identities = 12/47 (25%), Positives = 26/47 (54%), Gaps = 1/47 (2%)
Query: 4 ETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKW 50
+TI + E ++++KK E KE++ L+S ++ + +L +W
Sbjct: 70 KTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQ-HLEVELNRW 115
>pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1
Selenomethionyl Crystals
Length = 219
Score = 25.0 bits (53), Expect = 1.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQ 59
Q + Q + L RK++E E D+L +D KT ++ L E KG ++
Sbjct: 146 QTRNQGDHLLHSTRKQVE---EAGDKLPADDKTAIESALTALETALKGEDK 193
>pdb|1EXQ|A Chain A, Crystal Structure Of The Hiv-1 Integrase Catalytic Core
Domain
pdb|1EXQ|B Chain B, Crystal Structure Of The Hiv-1 Integrase Catalytic Core
Domain
Length = 154
Score = 25.0 bits (53), Expect = 1.4
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 91 QSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII 149
>pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 25.0 bits (53), Expect = 1.4
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 13 QQESLN---KDYRKKLESIKERSDRLESDLK 40
+QE+L K+ KK E++KER+D L +++
Sbjct: 24 EQEALTGECKELEKKNEALKERADSLAKEIQ 54
>pdb|1BIZ|A Chain A, Hiv-1 Integrase Core Domain
pdb|1BIZ|B Chain B, Hiv-1 Integrase Core Domain
Length = 166
Score = 24.6 bits (52), Expect = 1.8
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 100 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII 158
>pdb|1QS4|B Chain B, Core Domain Of Hiv-1 Integrase Comlexed With Mg++ And
1-(5-
Chloroindol-3-Yl)-3-Hydroxy-3-(2h-Tetrazol-5-Yl)-
Propenone
pdb|1QS4|C Chain C, Core Domain Of Hiv-1 Integrase Comlexed With Mg++ And
1-(5-
Chloroindol-3-Yl)-3-Hydroxy-3-(2h-Tetrazol-5-Yl)-
Propenone
pdb|1QS4|A Chain A, Core Domain Of Hiv-1 Integrase Comlexed With Mg++ And
1-(5-
Chloroindol-3-Yl)-3-Hydroxy-3-(2h-Tetrazol-5-Yl)-
Propenone
Length = 154
Score = 24.6 bits (52), Expect = 1.8
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 91 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII 149
>pdb|1BIU|A Chain A, Hiv-1 Integrase Core Domain Complexed With Mg++
pdb|1BIU|B Chain B, Hiv-1 Integrase Core Domain Complexed With Mg++
pdb|1BIU|C Chain C, Hiv-1 Integrase Core Domain Complexed With Mg++
Length = 166
Score = 24.6 bits (52), Expect = 1.8
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 100 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII 158
>pdb|1BIS|B Chain B, Hiv-1 Integrase Core Domain
pdb|1BIS|A Chain A, Hiv-1 Integrase Core Domain
Length = 166
Score = 24.6 bits (52), Expect = 1.8
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 100 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII 158
>pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
Length = 227
Score = 24.6 bits (52), Expect = 1.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 8 KQLQEQQESLNKDYRKKLESIKERSDR 34
+ LQ Q++ + ++ + L IKER DR
Sbjct: 158 RMLQLQEKGFSVNFERLLAEIKERDDR 184
>pdb|1B9D|A Chain A, Mobility Of An Hiv-1 Integrase Active Site Loop Is
Correlated With Catalytic Activity
Length = 163
Score = 24.6 bits (52), Expect = 1.8
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 97 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII 155
>pdb|1HYV|A Chain A, Hiv Integrase Core Domain Complexed With Tetraphenyl
Arsonium
pdb|1HYZ|A Chain A, Hiv Integrase Core Domain Complexed With A Derivative Of
Tetraphenyl Arsonium
Length = 166
Score = 24.6 bits (52), Expect = 1.8
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 100 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII 158
>pdb|1ITG| Hiv-1 Integrase (Catalytic Domain Comprising Residues 50 - 212)
Mutant With Gly-Ser-His Appended To The N-Terminus And
Phe 185 Replaced By Lys (Ins(47-49),F185k)
Length = 166
Score = 24.6 bits (52), Expect = 1.8
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ +K + GY +++ DI+
Sbjct: 100 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDII 158
>pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj Bound To Manganese
Length = 424
Score = 24.3 bits (51), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (58%)
Query: 61 LTDILNEREQLDLDQQRLNAQKQALENHMKQR 92
LTD E + L + RLNA++Q LE M ++
Sbjct: 250 LTDDAAEAQALVGELHRLNARRQTLEEAMLRK 281
>pdb|1BHL| Cacodylated Catalytic Domain Of Hiv-1 Integrase
Length = 151
Score = 24.3 bits (51), Expect = 2.4
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ K + GY +++ DI+
Sbjct: 90 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII 148
>pdb|1CXZ|B Chain B, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
Length = 86
Score = 24.3 bits (51), Expect = 2.4
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 6 ISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDIL 65
+ +QL+ ++E L ++ RK+L+ +KE ++ L T L E +G ++L D+L
Sbjct: 19 VQQQLELERERLRREIRKELK-LKEGAENLRR-ATTDLGRSLGPVELLLRGSSRRL-DLL 75
Query: 66 NEREQ 70
+++ Q
Sbjct: 76 HQQLQ 80
>pdb|1BI4|B Chain B, Catalytic Domain Of Hiv-1 Integrase
Length = 160
Score = 24.3 bits (51), Expect = 2.4
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ K + GY +++ DI+
Sbjct: 97 QSQGLIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII 155
>pdb|2ITG| Catalytic Domain Of Hiv-1 Integrase: Ordered Active Site In The
F185h Construct
Length = 163
Score = 24.3 bits (51), Expect = 2.4
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ K + GY +++ DI+
Sbjct: 97 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII 155
>pdb|1BL3|C Chain C, Catalytic Domain Of Hiv-1 Integrase
pdb|1BI4|C Chain C, Catalytic Domain Of Hiv-1 Integrase
pdb|1BL3|B Chain B, Catalytic Domain Of Hiv-1 Integrase
pdb|1BL3|A Chain A, Catalytic Domain Of Hiv-1 Integrase
pdb|1BI4|A Chain A, Catalytic Domain Of Hiv-1 Integrase
Length = 160
Score = 24.3 bits (51), Expect = 2.4
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 9 QLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYE--QQLTDIL 65
Q Q ES+NK+ +K + ++++++ L++ ++ K + GY +++ DI+
Sbjct: 97 QSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDII 155
>pdb|1GPD|G Chain G, D-Glyceraldehyde-3-Phosphate Dehydrogenase (E.C.1.2.1.12)
pdb|1GPD|R Chain R, D-Glyceraldehyde-3-Phosphate Dehydrogenase (E.C.1.2.1.12)
Length = 334
Score = 23.9 bits (50), Expect = 3.1
Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 11/52 (21%)
Query: 32 SDRLESDLKTQFDA----QLEK-------WEQNFKGYEQQLTDILNEREQLD 72
SD + + + FDA QL K W N GY Q++ D+L +++D
Sbjct: 281 SDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKVD 332
>pdb|4GPD|1 Chain 1, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|2 Chain 2, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|3 Chain 3, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|4 Chain 4, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
Length = 333
Score = 23.9 bits (50), Expect = 3.1
Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 11/52 (21%)
Query: 32 SDRLESDLKTQFDA----QLEK-------WEQNFKGYEQQLTDILNEREQLD 72
SD + + + FDA QL K W N GY Q++ D+L +++D
Sbjct: 280 SDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKVD 331
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 23.9 bits (50), Expect = 3.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 22 RKKLESIKERSDRLESDLKTQFD 44
R LE+++ + +LESD+ TQ +
Sbjct: 116 RSILENLRSKIQKLESDVSTQME 138
>pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|F Chain F, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|G Chain G, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|H Chain H, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20
Length = 100
Score = 23.5 bits (49), Expect = 4.0
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 51 EQNFKGYEQQLTDILNEREQLDLDQQRLNAQKQALENHMKQR 92
EQ+F ++ + + E+L+ ++ RL +K+ LE +++R
Sbjct: 4 EQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 133
Score = 23.5 bits (49), Expect = 4.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 16 SLNKDYRKKLESIKERSDRLESDLK 40
++ K++ +ESIK + + LES L+
Sbjct: 81 AIKKNFEDAMESIKSQKNELESTLQ 105
>pdb|1JTH|C Chain C, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
pdb|1JTH|A Chain A, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
Length = 82
Score = 23.5 bits (49), Expect = 4.0
Identities = 17/75 (22%), Positives = 34/75 (44%), Gaps = 4/75 (5%)
Query: 20 DYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILNEREQLDLDQQRLN 79
D R +LE ++ R+D+L + L+ E++ + L + + EQL +R+
Sbjct: 6 DMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQL----ERIE 61
Query: 80 AQKQALENHMKQREE 94
+ MK+ E+
Sbjct: 62 EGMDQINKDMKEAEK 76
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 23.5 bits (49), Expect = 4.0
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 4 ETISKQLQEQQESLNKDYRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTD 63
E I ++ + + L D KL++ + R++++ +DLK + + + QL
Sbjct: 86 EDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLKSSISV----ISTHLLQLIK 141
Query: 64 ILNEREQLDLD 74
L ER +++D
Sbjct: 142 TLVERAAIEID 152
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 23.1 bits (48), Expect = 5.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 58 EQQLTDILNEREQLDLDQQRLNAQKQALENHMK 90
EQQ+ D+LN+ ++ + ++ K+A EN +K
Sbjct: 55 EQQMKDVLNKFQKDLMAKRTAEFNKKADENKVK 87
>pdb|1OIS| Yeast Dna Topoisomerase I, N-Terminal Fragment
Length = 223
Score = 23.1 bits (48), Expect = 5.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 29 KERSDRLESDLKTQFDAQLEKWEQNFK 55
KE+ +L S K Q + EK+E+++K
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEEDYK 131
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 23.1 bits (48), Expect = 5.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 8 KQLQEQQESLNKDYRKKLESIKERSDR 34
+ LQ Q + + ++ + L IKER DR
Sbjct: 158 RMLQLQVKGFSVNFERLLAEIKERDDR 184
>pdb|1HS7|A Chain A, Vam3p N-Terminal Domain Solution Structure
Length = 97
Score = 23.1 bits (48), Expect = 5.3
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 2 ILETISKQLQEQQESLNKDYRKKLESIKERS---DRLESDLKTQFDAQLEKWEQNFKGYE 58
+LE ++ +++S Y+ + E I + D++ES++ + +L +N K
Sbjct: 21 VLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKY 80
Query: 59 QQLTDILNEREQL 71
Q L N+R+ L
Sbjct: 81 QSLQQSYNQRKSL 93
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 23.1 bits (48), Expect = 5.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 48 EKWEQNFKGYEQQLTDILNEREQLDLDQQRLNAQKQALENHMKQRE 93
+KW QN ++ + + E D+D+ L ++QA M+ E
Sbjct: 417 DKWVQNTTHLDELVKTASLKGEPSDMDKAELRRRQQAFGLTMEDME 462
>pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Cortexillin I
pdb|1D7M|B Chain B, Coiled-Coil Dimerization Domain From Cortexillin I
Length = 101
Score = 22.7 bits (47), Expect = 6.9
Identities = 13/39 (33%), Positives = 20/39 (50%)
Query: 56 GYEQQLTDILNEREQLDLDQQRLNAQKQALENHMKQREE 94
G E L REQL + +LN+ +LE+ +RE+
Sbjct: 8 GLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREK 46
>pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase
From Thermus Thermophilus Complexed With Cognate
Trnaphe
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of
Phenylalanyl-Trna Synthetase Complexed With
Phenylalanyl-Adenylate In The Presence Of Manganese
pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl- Adenylate
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalanine
Length = 350
Score = 22.7 bits (47), Expect = 6.9
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 46 QLEKWEQNFKGYEQQLTDILNEREQLDLDQQR-----LNAQKQALENHMKQREE 94
+L+ + + G + LT + L L+++R LNA K ALE ++ RE+
Sbjct: 17 ELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREK 70
>pdb|1FB1|A Chain A, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|B Chain B, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|C Chain C, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|D Chain D, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|E Chain E, Crystal Structure Of Human Gtp Cyclohydrolase I
Length = 196
Score = 22.3 bits (46), Expect = 9.0
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 21 YRKKLESIKERSDRLESDLKTQFDAQLEKWEQNFKGYEQQLTDILNE 67
Y L S+ E R + LKT + A + KGY++ ++D+LN+
Sbjct: 21 YSSILSSLGENPQR-QGLLKTPWRAA-SAMQFFTKGYQETISDVLND 65
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.307 0.125 0.321
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,273
Number of Sequences: 13198
Number of extensions: 14960
Number of successful extensions: 87
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 51
length of query: 94
length of database: 2,899,336
effective HSP length: 70
effective length of query: 24
effective length of database: 1,975,476
effective search space: 47411424
effective search space used: 47411424
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 46 (22.3 bits)