BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645081|ref|NP_207251.1| hypothetical protein
[Helicobacter pylori 26695]
(1021 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EZJ|A Chain A, Crystal Structure Of The Multimerizatio... 29 2.3
pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Co... 29 3.0
pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Co... 29 3.0
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Comp... 29 3.0
pdb|1PHO| Phosphoporin (Phoe) 28 5.1
pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase... 27 8.8
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 27 8.8
pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved G... 27 8.8
pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor >gi|2... 27 8.8
>pdb|1EZJ|A Chain A, Crystal Structure Of The Multimerization Domain Of The
Phosphoprotein From Sendai Virus
Length = 115
Score = 29.3 bits (64), Expect = 2.3
Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
Query: 447 NHKSKTFNDCGLVLERQKS-----DDSKEFLILQDSFIKKALKNFKRALGLEKE 495
N+ TFN CGL+L +KS D++K+ L ++ +KR +KE
Sbjct: 45 NYAEMTFNVCGLILSAEKSSARKVDENKQLLKQIQESVESFRDIYKRFSEYQKE 98
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 364 ETLVEAFMRDF-KERYKIEKLYYLLDDNIKNFEFAKIKHKISLYFKDAKFYPKSVALGFS 422
E + E D+ K+ ++ KL+ L D++ E AK+K + L F V + S
Sbjct: 501 ELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPS 560
Query: 423 SLFENKLKK 431
S+F+ ++K+
Sbjct: 561 SMFDVQVKR 569
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
Length = 847
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 364 ETLVEAFMRDF-KERYKIEKLYYLLDDNIKNFEFAKIKHKISLYFKDAKFYPKSVALGFS 422
E + E D+ K+ ++ KL+ L D++ E AK+K + L F V + S
Sbjct: 502 ELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPS 561
Query: 423 SLFENKLKK 431
S+F+ ++K+
Sbjct: 562 SMFDVQVKR 570
>pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
Length = 846
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 364 ETLVEAFMRDF-KERYKIEKLYYLLDDNIKNFEFAKIKHKISLYFKDAKFYPKSVALGFS 422
E + E D+ K+ ++ KL+ L D++ E AK+K + L F V + S
Sbjct: 501 ELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPS 560
Query: 423 SLFENKLKK 431
S+F+ ++K+
Sbjct: 561 SMFDVQVKR 569
>pdb|1PHO| Phosphoporin (Phoe)
Length = 330
Score = 28.1 bits (61), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 561 IAYQGKITSKDFPLENDEEYKLTLTYDIG 589
+ YQGK ++D +N + + +LTYD G
Sbjct: 149 LQYQGKNENRDVKKQNGDGFGTSLTYDFG 177
>pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
pdb|1IK9|B Chain B, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
Length = 213
Score = 27.3 bits (59), Expect = 8.8
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 381 EKLYYLLDDNIKNFEFAKIKHKISLYFKDAKFYPKSVALGFSSLFENKLKKNERLRYNSV 440
E Y+ + N+K+ F + A+ + +A ++ EN+ KNE L+ +
Sbjct: 91 ESAYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELIAYALDTIAENQ-AKNEHLQKENE 149
Query: 441 DLVVKENHKSKTFNDCGLVLERQKSDDSKEFLIL 474
L+ N F E ++D K F+++
Sbjct: 150 RLLRDWNDVQGRFEKAVSAKEALETDLYKRFILV 183
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 27.3 bits (59), Expect = 8.8
Identities = 15/58 (25%), Positives = 35/58 (59%), Gaps = 5/58 (8%)
Query: 116 KLCDNKVLSVKRYVNANTHENRFLKRFIKELLRIIHWREIEFQQVFEELIFSITSFLK 173
KL DN +V++++ ++ ++ ++ FIKEL + + ++ +L+FS+T+ +K
Sbjct: 2 KLLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNV-----KLVFSLTNKIK 54
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 27.3 bits (59), Expect = 8.8
Identities = 15/58 (25%), Positives = 35/58 (59%), Gaps = 5/58 (8%)
Query: 116 KLCDNKVLSVKRYVNANTHENRFLKRFIKELLRIIHWREIEFQQVFEELIFSITSFLK 173
KL DN +V++++ ++ ++ ++ FIKEL + + ++ +L+FS+T+ +K
Sbjct: 2 KLLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNV-----KLVFSLTNKIK 54
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 27.3 bits (59), Expect = 8.8
Identities = 12/53 (22%), Positives = 31/53 (57%), Gaps = 11/53 (20%)
Query: 279 LRQPINLDQEIPQLELC--------KGVYKEM---YIDMFSPEPFALLVGNGN 320
+R+ +N+ +++PQ ++C + +Y+ M Y+ + S + + +L+ NG+
Sbjct: 318 VRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGD 370
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,986,588
Number of Sequences: 13198
Number of extensions: 268331
Number of successful extensions: 547
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 9
length of query: 1021
length of database: 2,899,336
effective HSP length: 98
effective length of query: 923
effective length of database: 1,605,932
effective search space: 1482275236
effective search space used: 1482275236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)