BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645082|ref|NP_207252.1| hypothetical protein
[Helicobacter pylori 26695]
         (232 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1EGU|A  Chain A, Crystal Structure Of Streptococcus Pneu...    27  2.0
pdb|1LOH|A  Chain A, Streptococcus Pneumoniae Hyaluronate Ly...    27  2.0
pdb|1L8Q|A  Chain A, Crystal Structure Of Dna Replication In...    26  3.4
pdb|1HGX|A  Chain A, Hypoxanthine-Guanine-Xanthine Phosphori...    25  5.9
pdb|1NKS|A  Chain A, Adenylate Kinase From Sulfolobus Acidoc...    25  5.9
pdb|1KHV|B  Chain B, Crystal Structure Of Rabbit Hemorrhagic...    25  7.7
pdb|1G6O|A  Chain A, Crystal Structure Of The Helicobacter P...    25  7.7

>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
           Lyase At 1.56 A Resolution
 pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
           Lyase Cocrystallized With Ascorbic Acid
 pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
           Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
           With Hyaluronic Acid Disaccharide At 1.7 A Resolution
          Length = 731

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 19/93 (20%), Positives = 44/93 (46%), Gaps = 7/93 (7%)

Query: 30  TSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGI----RHYVVDKKKLNEYHQNNQEAF 85
           T+  +++EE+AK + +  S +  DE  ++T  + +    +H    +K +     + +   
Sbjct: 72  TATYRKLEEMAKQVTNPSSRYYQDETVVRTVRDSMEWMHKHVYNSEKSIVGNWWDYEIGT 131

Query: 86  KQALENRIDIVVCDNTNFESWQSKPYTDMAREF 118
            +A+ N + ++      F   + K YTD+  +F
Sbjct: 132 PRAINNTLSLM---KEYFSDEEIKKYTDVIEKF 161



>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
           Hexasaccharide Hyaluronan Substrate
 pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
           Tetrasaccharide Hyaluronan Substrate
          Length = 721

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 19/93 (20%), Positives = 44/93 (46%), Gaps = 7/93 (7%)

Query: 30  TSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGI----RHYVVDKKKLNEYHQNNQEAF 85
           T+  +++EE+AK + +  S +  DE  ++T  + +    +H    +K +     + +   
Sbjct: 70  TATYRKLEEMAKQVTNPSSRYYQDETVVRTVRDSMEWMHKHVYNSEKSIVGNWWDYEIGT 129

Query: 86  KQALENRIDIVVCDNTNFESWQSKPYTDMAREF 118
            +A+ N + ++      F   + K YTD+  +F
Sbjct: 130 PRAINNTLSLM---KEYFSDEEIKKYTDVIEKF 159



>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
          Length = 324

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 26  GGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQTDEEGIRHYVVDKKKLNEYHQNNQEAF 85
           G GKT L++     AK  G+ +   S D+ F Q   E ++     K  +NE+    +   
Sbjct: 47  GTGKTHLLQAAGNEAKKRGYRVIYSSADD-FAQAXVEHLK-----KGTINEFRNXYKS-- 98

Query: 86  KQALENRIDIVVCDNTNFESWQSKPYTDMAREFGYKILL 124
                  +D+++ D+  F S + +   +    F    LL
Sbjct: 99  -------VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL 130



>pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
           (Hgxprtase)
 pdb|1HGX|B Chain B, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
           (Hgxprtase)
          Length = 183

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 162 LERVLVEPQDYEKQNRELSLKALEF 186
           LERVL    D +K+ REL+ +  EF
Sbjct: 10  LERVLYNQDDIQKRIRELAAELTEF 34



>pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidocaldarius
 pdb|1NKS|B Chain B, Adenylate Kinase From Sulfolobus Acidocaldarius
 pdb|1NKS|C Chain C, Adenylate Kinase From Sulfolobus Acidocaldarius
 pdb|1NKS|D Chain D, Adenylate Kinase From Sulfolobus Acidocaldarius
 pdb|1NKS|E Chain E, Adenylate Kinase From Sulfolobus Acidocaldarius
 pdb|1NKS|F Chain F, Adenylate Kinase From Sulfolobus Acidocaldarius
          Length = 194

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 13/58 (22%), Positives = 32/58 (54%), Gaps = 8/58 (13%)

Query: 24 IPGGGKTSLIKQIEELAKSLGHSISVHSTDEYFIQT--------DEEGIRHYVVDKKK 73
          IPG GK++++ +++E+  + G +  + +  ++ + T        D + +R   V+K+K
Sbjct: 9  IPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQK 66



>pdb|1KHV|B Chain B, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
           Dependent Rna Polymerase Complexed With Lu3+
 pdb|1KHW|B Chain B, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
           Dependent Rna Polymerase Complexed With Mn2+
 pdb|1KHV|A Chain A, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
           Dependent Rna Polymerase Complexed With Lu3+
 pdb|1KHW|A Chain A, Crystal Structure Of Rabbit Hemorrhagic Disease Virus Rna-
           Dependent Rna Polymerase Complexed With Mn2+
          Length = 516

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 194 DVIFYSFGEQLMPILTRMLVSVSKSHRKRLENYG 227
           D  FY++G+  +  +T M+VS+  +  + L +YG
Sbjct: 346 DAPFYTYGDDGVYAMTPMMVSLLPAIIENLRDYG 379



>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
           Hp0525, In Complex With Adp
 pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
           Hp0525, In Complex With Adp
          Length = 330

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 26  GGGKTSLIKQIEELAKSLGHSISVHSTDE 54
           G GKT+ IK I E        IS+  T+E
Sbjct: 181 GSGKTTYIKSIXEFIPKEERIISIEDTEE 209



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,394,398
Number of Sequences: 13198
Number of extensions: 59218
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 7
length of query: 232
length of database: 2,899,336
effective HSP length: 85
effective length of query: 147
effective length of database: 1,777,506
effective search space: 261293382
effective search space used: 261293382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)