BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645083|ref|NP_207253.1| hypothetical protein
[Helicobacter pylori 26695]
(103 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 26 0.77
pdb|1ZIN| Adenylate Kinase With Bound Ap5a >gi|2392649|pd... 24 2.2
pdb|1IVO|A Chain A, Crystal Structure Of The Complex Of Hum... 24 2.9
pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 24 2.9
pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 24 2.9
pdb|1CM0|A Chain A, Crystal Structure Of The PcafCOENZYME-A... 23 3.8
pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxido... 23 3.8
pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fib... 23 3.8
pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratas... 23 5.0
pdb|1H7R|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolae... 23 5.0
pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolae... 23 5.0
pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolae... 23 5.0
pdb|1KFD| Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7... 23 6.5
pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment) (E.C... 23 6.5
pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Su... 23 6.5
pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna... 23 6.5
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 22 8.5
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 22 8.5
pdb|1KO7|A Chain A, X-Ray Structure Of The Hpr KinasePHOSPH... 22 8.5
pdb|241L| The Response Of T4 Lysozyme To Large-To-Small S... 22 8.5
pdb|250L| The Response Of T4 Lysozyme To Large-To-Small S... 22 8.5
>pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 25.8 bits (55), Expect = 0.77
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 70 EKFAKEIERVKITTKNVL 87
EK+AKEIE +K T+N+L
Sbjct: 40 EKYAKEIEALKEQTRNML 57
>pdb|1ZIN| Adenylate Kinase With Bound Ap5a
pdb|1ZIP| Bacillus Stearothermophilus Adenylate Kinase
pdb|1ZIO| Phosphotransferase
Length = 217
Score = 24.3 bits (51), Expect = 2.2
Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Query: 3 LQVVARTLRKNVNILEEQGFIEVIKGKQRYLYVYLKDYRELEG 45
L+V + ++ V+ E++G++ I G+Q V+ D REL G
Sbjct: 172 LEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVF-ADIRELLG 213
>pdb|1IVO|A Chain A, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains.
pdb|1IVO|B Chain B, Crystal Structure Of The Complex Of Human Epidermal
Growth Factor And Receptor Extracellular Domains
Length = 622
Score = 23.9 bits (50), Expect = 2.9
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Query: 21 GFIEVIKGKQRYLYVYLKDYRELEGYNSVGANQKNNIPSPFFLQIMR 67
G +E+ ++ Y +LK +E+ GY + N IP LQI+R
Sbjct: 39 GNLEITYVQRNYDLSFLKTIQEVAGYVLIALNTVERIPLE-NLQIIR 84
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 23.9 bits (50), Expect = 2.9
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 15 NILEEQGFIEVIKGKQRYLYVYLKDYRELE 44
NI E ++E ++G Y ++DYR+LE
Sbjct: 218 NIKELDVYVEELEGNSIYEIDSVQDYRKLE 247
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 23.9 bits (50), Expect = 2.9
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 15 NILEEQGFIEVIKGKQRYLYVYLKDYRELE 44
NI E ++E ++G Y ++DYR+LE
Sbjct: 218 NIKELDVYVEELEGNSIYEIDSVQDYRKLE 247
>pdb|1CM0|A Chain A, Crystal Structure Of The PcafCOENZYME-A Complex
pdb|1CM0|B Chain B, Crystal Structure Of The PcafCOENZYME-A Complex
Length = 168
Score = 23.5 bits (49), Expect = 3.8
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 14 VNILEEQGFIEVIKGKQRYLYVYLKDYRELEGYNSVGANQKNNIP 58
+ ++QGF + IK + Y+KDY EG +G IP
Sbjct: 124 IGYFKKQGFSKEIKIPKTKYVGYIKDY---EGATLMGCELNPRIP 165
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 23.5 bits (49), Expect = 3.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 68 FLEKFAKEIERVKITTKNVLCIFLAKSLCKELIM 101
FL + A E+ K T + ++C+ +C +L++
Sbjct: 771 FLTEVAVEVATGKATVEKMVCVADIGKICNKLVV 804
>pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|E Chain E, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|E Chain E, Crystal Structure Of Native Chicken Fibrinogen
Length = 464
Score = 23.5 bits (49), Expect = 3.8
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 35 VYLKDYR-ELE-GYNSVGANQKNNIPSPFFLQIMR-FLEKFAKEIERVK--ITTKNVLC 88
+ L +Y E+E YN + N NNIPS L+++R ++ K+I++++ I T+ C
Sbjct: 142 IILSEYNTEMELHYNYIKDNLDNNIPSS--LRVLRAVIDSLHKKIQKLENAIATQTDYC 198
>pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic
Acid Complex
pdb|1GJP|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Oxosebacic Acid
Length = 340
Score = 23.1 bits (48), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (51%)
Query: 41 RELEGYNSVGANQKNNIPSPFFLQIMRFLEKFAKEI 76
R LE S GA+ PS F+L IMR + K++
Sbjct: 247 RALERDMSEGADGIIVKPSTFYLDIMRDASEICKDL 282
>pdb|1H7R|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Succinylacetone At 2.0 A Resolution.
pdb|1H7N|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid At 1.6 A Resolution
pdb|1H7P|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Keto-5-Amino-Hexanoic (Kah) At 1.64 A
Resolution
pdb|1QNV|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) Complex
pdb|1QML|A Chain A, Hg Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase
Length = 342
Score = 23.1 bits (48), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (51%)
Query: 41 RELEGYNSVGANQKNNIPSPFFLQIMRFLEKFAKEI 76
R LE S GA+ PS F+L IMR + K++
Sbjct: 247 RALERDMSEGADGIIVKPSTFYLDIMRDASEICKDL 282
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid
Length = 342
Score = 23.1 bits (48), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (51%)
Query: 41 RELEGYNSVGANQKNNIPSPFFLQIMRFLEKFAKEI 76
R LE S GA+ PS F+L IMR + K++
Sbjct: 247 RALERDMSEGADGIIVKPSTFYLDIMRDASEICKDL 282
>pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 5-Aminolaevulinic Acid At 1.7 A
Resolution
Length = 341
Score = 23.1 bits (48), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (51%)
Query: 41 RELEGYNSVGANQKNNIPSPFFLQIMRFLEKFAKEI 76
R LE S GA+ PS F+L IMR + K++
Sbjct: 247 RALERDMSEGADGIIVKPSTFYLDIMRDASEICKDL 282
>pdb|1KFD| Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7) Complexed With
Dctp
pdb|1DPI| DNA Polymerase I (Klenow Fragment) (E.C.2.7.7.7) - dCMP Complex
Length = 605
Score = 22.7 bits (47), Expect = 6.5
Identities = 7/16 (43%), Positives = 13/16 (80%)
Query: 18 EEQGFIEVIKGKQRYL 33
+EQG++E + G++ YL
Sbjct: 487 KEQGYVETLDGRRLYL 502
>pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment) (E.C.2.7.7.7) Mutant
With Asp 355 Replaced By Ala (D355a) Complexed With Dna
Length = 605
Score = 22.7 bits (47), Expect = 6.5
Identities = 7/16 (43%), Positives = 13/16 (80%)
Query: 18 EEQGFIEVIKGKQRYL 33
+EQG++E + G++ YL
Sbjct: 487 KEQGYVETLDGRRLYL 502
>pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
Manganese
pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
Only
pdb|1KFS|A Chain A, All-Oxygen Dna Complexed To The 3'-5' Exonuclease Of Dna
Polymerase I From E. Coli
pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Short Dna Fragment Carrying 2'-0-
Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
pdb|1KRP|A Chain A, Rp Isomer Phosphorothioate Dna Complexed To The 3'-5'
Exonuclease Of Dna Polymerase I From E. Coli
pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
And Europium (Iii) Ion
pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
pdb|1KSP|A Chain A, Sp Isomer Phosphorothioate Dna Complexed To The 3'-5'
Exonuclease Of Dna Polymerase I From E. Coli
pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
Manganese
pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna Tetramer Carrying
2'-O-(3-Aminopropyl)- Rna Modification
5'-D(Tt)-Ap(U)-D(T)-3'
Length = 605
Score = 22.7 bits (47), Expect = 6.5
Identities = 7/16 (43%), Positives = 13/16 (80%)
Query: 18 EEQGFIEVIKGKQRYL 33
+EQG++E + G++ YL
Sbjct: 487 KEQGYVETLDGRRLYL 502
>pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna
Length = 605
Score = 22.7 bits (47), Expect = 6.5
Identities = 7/16 (43%), Positives = 13/16 (80%)
Query: 18 EEQGFIEVIKGKQRYL 33
+EQG++E + G++ YL
Sbjct: 487 KEQGYVETLDGRRLYL 502
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 22.3 bits (46), Expect = 8.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 70 EKFAKEIERVKITTKNVL 87
EK+A+EIE +K T+++L
Sbjct: 40 EKYAQEIEALKEQTRSML 57
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 22.3 bits (46), Expect = 8.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 70 EKFAKEIERVKITTKNVL 87
EK+A+EIE +K T+++L
Sbjct: 40 EKYAQEIEALKEQTRSML 57
>pdb|1KO7|A Chain A, X-Ray Structure Of The Hpr KinasePHOSPHATASE FROM
Staphylococcus Xylosus At 1.95 A Resolution
pdb|1KO7|B Chain B, X-Ray Structure Of The Hpr KinasePHOSPHATASE FROM
Staphylococcus Xylosus At 1.95 A Resolution
Length = 314
Score = 22.3 bits (46), Expect = 8.5
Identities = 9/41 (21%), Positives = 25/41 (60%)
Query: 14 VNILEEQGFIEVIKGKQRYLYVYLKDYRELEGYNSVGANQK 54
+N++ G ++ K+ L ++L+++ + + Y+ VG N++
Sbjct: 207 INVMTLFGAGSILTEKRLRLNIHLENWHKEKLYDRVGLNEE 247
>pdb|241L| The Response Of T4 Lysozyme To Large-To-Small Substitutions
Within The Core And Its Relation To The Hydrophobic
Effect
Length = 164
Score = 22.3 bits (46), Expect = 8.5
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 37 LKDYRELEGYNSVGA 51
LK Y++ EGY ++GA
Sbjct: 15 LKIYKDTEGYYTIGA 29
>pdb|250L| The Response Of T4 Lysozyme To Large-To-Small Substitutions
Within The Core And Its Relation To The Hydrophobic
Effect
Length = 164
Score = 22.3 bits (46), Expect = 8.5
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 37 LKDYRELEGYNSVGA 51
LK Y++ EGY ++GA
Sbjct: 15 LKIYKDTEGYYTIGA 29
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.327 0.144 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,167
Number of Sequences: 13198
Number of extensions: 18427
Number of successful extensions: 354
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 21
length of query: 103
length of database: 2,899,336
effective HSP length: 79
effective length of query: 24
effective length of database: 1,856,694
effective search space: 44560656
effective search space used: 44560656
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)