BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645084|ref|NP_207254.1| hypothetical protein
[Helicobacter pylori 26695]
(150 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F1Z|A Chain A, Tnsa, A Catalytic Component Of The Tn7 ... 25 2.9
pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome... 25 4.9
pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome... 25 4.9
pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Cor... 25 4.9
pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dn... 24 6.5
pdb|1MBE| Mouse C-Myb Dna-Binding Domain Repeat 1 >gi|112... 24 8.4
pdb|1BF5|A Chain A, Stat-1 Dna Complex 24 8.4
>pdb|1F1Z|A Chain A, Tnsa, A Catalytic Component Of The Tn7 Transposition
System
pdb|1F1Z|B Chain B, Tnsa, A Catalytic Component Of The Tn7 Transposition
System
Length = 273
Score = 25.4 bits (54), Expect = 2.9
Identities = 25/106 (23%), Positives = 48/106 (44%), Gaps = 11/106 (10%)
Query: 20 VKEHLEKFYSNKEQETIAQTLENETEISCSYFWDKDFLLLEQLLENNLGHFTFESEFA-- 77
VKE++E YS K +E A+ L + ++ +L++ + N+ + + + A
Sbjct: 172 VKENIEWLYSVKTEEVSAELLAQLSPLA---------HILQEKGDENIINVCKQVDIAYD 222
Query: 78 LLKDKETLNLSQIKQIGVLKVLTYEMIQTLKNQIIHLAQVVNEENL 123
L K + + G +K Y+ + K + ++QVVN E L
Sbjct: 223 LELGKTLSEIRALTANGFIKFNIYKSFRANKCADLCISQVVNMEEL 268
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 287
Score = 24.6 bits (52), Expect = 4.9
Identities = 14/36 (38%), Positives = 22/36 (60%), Gaps = 3/36 (8%)
Query: 110 QIIHLAQVVNEENLEKDEELVVYHLNFTSRNNLTKY 145
+II+LA +E+N EKD EL + + + N L K+
Sbjct: 197 KIIYLA---HEDNKEKDFELEISWCSLSETNGLHKF 229
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
Length = 244
Score = 24.6 bits (52), Expect = 4.9
Identities = 14/36 (38%), Positives = 22/36 (60%), Gaps = 3/36 (8%)
Query: 110 QIIHLAQVVNEENLEKDEELVVYHLNFTSRNNLTKY 145
+II+LA +E+N EKD EL + + + N L K+
Sbjct: 194 KIIYLA---HEDNKEKDFELEISWCSLSETNGLHKF 226
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
Length = 248
Score = 24.6 bits (52), Expect = 4.9
Identities = 14/36 (38%), Positives = 22/36 (60%), Gaps = 3/36 (8%)
Query: 110 QIIHLAQVVNEENLEKDEELVVYHLNFTSRNNLTKY 145
+II+LA +E+N EKD EL + + + N L K+
Sbjct: 198 KIIYLA---HEDNKEKDFELEISWCSLSETNGLHKF 230
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 24.3 bits (51), Expect = 6.5
Identities = 14/47 (29%), Positives = 26/47 (54%), Gaps = 5/47 (10%)
Query: 34 ETIAQTLENETEISCSYFWDKDFLLLEQLLENNLGHFTFESEFALLK 80
+ IA L N T++ C + W K +L +L++ G +T E + ++K
Sbjct: 30 KVIANYLPNRTDVQCQHRWQK--VLNPELIK---GPWTKEEDQRVIK 71
>pdb|1MBE| Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF| Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 23.9 bits (50), Expect = 8.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 34 ETIAQTLENETEISCSYFWDK 54
+ IA L N T++ C + W K
Sbjct: 27 KVIANYLPNRTDVQCQHRWQK 47
>pdb|1BF5|A Chain A, Stat-1 Dna Complex
Length = 545
Score = 23.9 bits (50), Expect = 8.4
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 13 IDETLLNVKEHLEKFYSNKEQETIAQTLENETEISCSYFWDKDFLLLEQLLENN 66
+ E+L V++ L+K +++ T + + WD+ F L +QL++++
Sbjct: 117 VAESLQQVRQQLKKLEELEQKYTYEHDPITKNK---QVLWDRTFSLFQQLIQSS 167
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 770,970
Number of Sequences: 13198
Number of extensions: 26575
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 7
length of query: 150
length of database: 2,899,336
effective HSP length: 80
effective length of query: 70
effective length of database: 1,843,496
effective search space: 129044720
effective search space used: 129044720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)