BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645086|ref|NP_207256.1| hypothetical protein
[Helicobacter pylori 26695]
(78 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1SCH|A Chain A, Peanut Peroxidase >gi|1633131|pdb|1SCH|... 27 0.40
pdb|1M47|A Chain A, Crystal Structure Of Human Interleukin-... 25 1.2
pdb|1IRL| Mol_id: 1; Molecule: Interleukin-2; Chain: Null... 25 1.2
pdb|1M4A|A Chain A, Crystal Structure Of Human Interleukin-... 25 1.2
pdb|1M4B|A Chain A, Crystal Structure Of Human Interleukin-... 25 1.2
pdb|3INK|C Chain C, Interleukin 2 Mutant With Cys 125 Repla... 25 1.2
pdb|1F0J|A Chain A, Catalytic Domain Of Human Phosphodieste... 25 1.5
pdb|1IL6| Human Interleukin-6, Nmr, Minimized Average Str... 23 4.5
pdb|1ALU| Human Interleukin-6 23 4.5
pdb|1F82|A Chain A, Botulinum Neurotoxin Type B Catalytic D... 23 5.8
pdb|1F83|A Chain A, Botulinum Neurotoxin Type B Catalytic D... 23 5.8
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 23 5.8
pdb|1CBY| Delta-Endotoxin 23 7.6
pdb|1LVO|A Chain A, Structure Of Coronavirus Main Proteinas... 23 7.6
pdb|1F2E|A Chain A, Structure Of Sphingomonad, Glutathione ... 23 7.6
pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin... 22 10.0
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 26.9 bits (58), Expect = 0.40
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 22 AISSLKSSVNALMKKEAHLDAYILVTNIRN-IVDELHKEVVLANQSN 67
A+S++KS+VN+ + KEA + A +L + + V V+L + SN
Sbjct: 14 ALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSN 60
>pdb|1M47|A Chain A, Crystal Structure Of Human Interleukin-2
pdb|1M48|A Chain A, Crystal Structure Of Human Il-2 Complexed With
(R)-N-[2-[1-
(Aminoiminomethyl)-3-Piperidinyl]-1-Oxoethyl]-4-
(Phenylethynyl)-L-Phenylalanine Methyl Ester
pdb|1M48|B Chain B, Crystal Structure Of Human Il-2 Complexed With
(R)-N-[2-[1-
(Aminoiminomethyl)-3-Piperidinyl]-1-Oxoethyl]-4-
(Phenylethynyl)-L-Phenylalanine Methyl Ester
pdb|1M49|A Chain A, Crystal Structure Of Human Interleukin-2 Complexed With
Sp- 1985
pdb|1M49|B Chain B, Crystal Structure Of Human Interleukin-2 Complexed With
Sp- 1985
pdb|1M4C|A Chain A, Crystal Structure Of Human Interleukin-2
pdb|1M4C|B Chain B, Crystal Structure Of Human Interleukin-2
Length = 133
Score = 25.4 bits (54), Expect = 1.2
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 19 LEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDEL 56
LE+ + L+ +N K HL L++NI IV EL
Sbjct: 59 LEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLEL 96
>pdb|1IRL| Mol_id: 1; Molecule: Interleukin-2; Chain: Null; Engineered:
Yes; Mutation: F42a
Length = 133
Score = 25.4 bits (54), Expect = 1.2
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 19 LEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDEL 56
LE+ + L+ +N K HL L++NI IV EL
Sbjct: 59 LEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLEL 96
>pdb|1M4A|A Chain A, Crystal Structure Of Human Interleukin-2 Y31c Covalently
Modified At C31 With (1h-Indol-3-Yl)-(2-Mercapto-
Ethoxyimino)-Acetic Acid
Length = 133
Score = 25.4 bits (54), Expect = 1.2
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 19 LEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDEL 56
LE+ + L+ +N K HL L++NI IV EL
Sbjct: 59 LEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLEL 96
>pdb|1M4B|A Chain A, Crystal Structure Of Human Interleukin-2 K43c Covalently
Modified At C43 With 2-[2-(2-Cyclohexyl-2-Guanidino-
Acetylamino)-Acetylamino]-N-(3-Mercapto-Propyl)-
Propionamide
Length = 133
Score = 25.4 bits (54), Expect = 1.2
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 19 LEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDEL 56
LE+ + L+ +N K HL L++NI IV EL
Sbjct: 59 LEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLEL 96
>pdb|3INK|C Chain C, Interleukin 2 Mutant With Cys 125 Replaced By Ala
(C125a)
pdb|3INK|D Chain D, Interleukin 2 Mutant With Cys 125 Replaced By Ala
(C125a)
Length = 133
Score = 25.4 bits (54), Expect = 1.2
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 19 LEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDEL 56
LE+ + L+ +N K HL L++NI IV EL
Sbjct: 59 LEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLEL 96
>pdb|1F0J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b
pdb|1F0J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b
Length = 377
Score = 25.0 bits (53), Expect = 1.5
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 1 MQKEVLVEKPNPLTISYNLEQAISSLKSSVNALMKKEAHLDAYI-LVTNIRNIVDELHKE 59
+ + L+ + L + YN E + + +V + +E H D ++ L R + ++ +
Sbjct: 130 VSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEEHCDIFMNLTKKQRQTLRKMVID 189
Query: 60 VVLANQSNKN 69
+VLA +K+
Sbjct: 190 MVLATDMSKH 199
>pdb|1IL6| Human Interleukin-6, Nmr, Minimized Average Structure
pdb|2IL6| Human Interleukin-6, Nmr, 32 Structures
Length = 185
Score = 23.5 bits (49), Expect = 4.5
Identities = 19/74 (25%), Positives = 32/74 (42%), Gaps = 12/74 (16%)
Query: 3 KEVLVEKPNPLTISYNLEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDELHKEVVL 62
K+V PLT S +++ I + ++AL K+ + ++ + E KE +
Sbjct: 10 KDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCN----------KSNMCESSKEALA 59
Query: 63 ANQSNKNTPKRKRK 76
N N N PK K
Sbjct: 60 EN--NLNLPKMAEK 71
>pdb|1ALU| Human Interleukin-6
Length = 186
Score = 23.5 bits (49), Expect = 4.5
Identities = 19/74 (25%), Positives = 32/74 (42%), Gaps = 12/74 (16%)
Query: 3 KEVLVEKPNPLTISYNLEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDELHKEVVL 62
K+V PLT S +++ I + ++AL K+ + ++ + E KE +
Sbjct: 11 KDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCN----------KSNMCESSKEALA 60
Query: 63 ANQSNKNTPKRKRK 76
N N N PK K
Sbjct: 61 EN--NLNLPKMAEK 72
>pdb|1F82|A Chain A, Botulinum Neurotoxin Type B Catalytic Domain
Length = 424
Score = 23.1 bits (48), Expect = 5.8
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 45 LVTNIRNIVDELHKEVVLANQSNKNTPKRKRK 76
++ N R IVD L+K +V + N N K K
Sbjct: 291 VLQNFRGIVDRLNKVLVCISDPNININIYKNK 322
>pdb|1F83|A Chain A, Botulinum Neurotoxin Type B Catalytic Domain With
Synaptobrevin-Ii Bound
Length = 425
Score = 23.1 bits (48), Expect = 5.8
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 45 LVTNIRNIVDELHKEVVLANQSNKNTPKRKRK 76
++ N R IVD L+K +V + N N K K
Sbjct: 291 VLQNFRGIVDRLNKVLVCISDPNININIYKNK 322
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 23.1 bits (48), Expect = 5.8
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 45 LVTNIRNIVDELHKEVVLANQSNKNTPKRKRK 76
++ N R IVD L+K +V + N N K K
Sbjct: 291 VLQNFRGIVDRLNKVLVCISDPNININIYKNK 322
>pdb|1CBY| Delta-Endotoxin
Length = 259
Score = 22.7 bits (47), Expect = 7.6
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 11 NPLTISYNLEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDELHK 58
+PL +++N E+A+ N+ + K + I +V++L K
Sbjct: 69 DPLNLNFNFEKALQIANGIPNSAIVKTLNQSVIQQTVEISVMVEQLKK 116
>pdb|1LVO|A Chain A, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|B Chain B, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|C Chain C, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|D Chain D, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|E Chain E, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|F Chain F, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
Length = 302
Score = 22.7 bits (47), Expect = 7.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 60 VVLANQSNKNTPKRKRKS 77
V+ NQ N NTP+ K KS
Sbjct: 87 VLKVNQVNPNTPEHKFKS 104
>pdb|1F2E|A Chain A, Structure Of Sphingomonad, Glutathione S-Transferase
Complexed With Glutathione
pdb|1F2E|B Chain B, Structure Of Sphingomonad, Glutathione S-Transferase
Complexed With Glutathione
pdb|1F2E|C Chain C, Structure Of Sphingomonad, Glutathione S-Transferase
Complexed With Glutathione
pdb|1F2E|D Chain D, Structure Of Sphingomonad, Glutathione S-Transferase
Complexed With Glutathione
Length = 201
Score = 22.7 bits (47), Expect = 7.6
Identities = 17/58 (29%), Positives = 25/58 (42%), Gaps = 8/58 (13%)
Query: 4 EVLVEKPNPLTISYNLEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDELHKEVV 61
E L E NP + Y +Q + + L E LD Y L++ + + E HK V
Sbjct: 61 ETLTE--NPAILLYIADQ------NPASGLAPAEGSLDRYRLLSRLSFLGSEFHKAFV 110
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 133
Score = 22.3 bits (46), Expect = 10.0
Identities = 18/55 (32%), Positives = 27/55 (48%), Gaps = 5/55 (9%)
Query: 4 EVLVEKPNPLTISYNLEQAISSLKSSVNALMKKEAHLDAYILVTNIRNIVDELHK 58
EV++ + I N E A+ S+KS N L E+ L + N+R I D + K
Sbjct: 71 EVIMSVGAGVAIKKNFEDAMESIKSQKNEL---ESTLQK--MGENLRAITDIMMK 120
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.308 0.124 0.313
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,072
Number of Sequences: 13198
Number of extensions: 10068
Number of successful extensions: 23
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 16
length of query: 78
length of database: 2,899,336
effective HSP length: 54
effective length of query: 24
effective length of database: 2,186,644
effective search space: 52479456
effective search space used: 52479456
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)