BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645088|ref|NP_207258.1| hypothetical protein
[Helicobacter pylori 26695]
(162 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 39 3e-04
pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Confor... 27 0.88
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Acti... 27 0.88
pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:... 27 0.88
pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near ... 27 0.88
pdb|1ETE|A Chain A, Crystal Structure Of The Flt3 Ligand >g... 27 1.1
pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Ma... 27 1.5
pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphory... 27 1.5
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin P... 27 1.5
pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Es... 27 1.5
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 26 2.5
pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And N... 25 3.3
pdb|1MIU|A Chain A, Structure Of A Brca2-Dss1 Complex 25 3.3
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase >gi|23... 25 3.3
pdb|1JE1|C Chain C, 5'-Deoxy-5'-Methylthioadenosine Phospho... 25 4.3
pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase... 24 7.4
pdb|1FU1|B Chain B, Crystal Structure Of Human Xrcc4 >gi|12... 24 7.4
pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin... 24 9.7
pdb|1RFB|A Chain A, Interferon Gamma (Bovine, Recombinant) ... 24 9.7
pdb|1D9C|A Chain A, Bovine Interferon-Gamma At 2.0 Angstrom... 24 9.7
pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin... 24 9.7
pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And N... 24 9.7
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 38.9 bits (89), Expect = 3e-04
Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 19/145 (13%)
Query: 11 LKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEK-----------NQQEEFLEQDT 59
LKE F + F ++N E + F + + ++E Q + N ++F EQ+
Sbjct: 194 LKEHPTDFSV-EFLEQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAFNYMDKFNEQEI 252
Query: 60 KENQEELIKNIQTSIAKNQELEKIS--FEKWENKIQER---VLPKLKRIVTHKLQESITS 114
+ EEL Q +++ ++ EKI ++ W + + E +L KL+ + K + I S
Sbjct: 253 NLSLEEL--KDQRMLSRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHS 310
Query: 115 SINTQLESFKKDELDLSSVFEIQRK 139
+ E K+ ++D S + K
Sbjct: 311 LSQEEKELLKRIQIDSSDFLSTEEK 335
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 27.3 bits (59), Expect = 0.88
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 9 EHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEEL 66
E K + +F+I FTKE + KC L M + ++ +EE E D E++
Sbjct: 326 EEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKV 383
>pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1B7T|A Chain A, Myosin Digested By Papain
Length = 835
Score = 27.3 bits (59), Expect = 0.88
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 9 EHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEEL 66
E K + +F+I FTKE + KC L M + ++ +EE E D E++
Sbjct: 326 EEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKV 383
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 831
Score = 27.3 bits (59), Expect = 0.88
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 9 EHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEEL 66
E K + +F+I FTKE + KC L M + ++ +EE E D E++
Sbjct: 322 EEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKV 379
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 27.3 bits (59), Expect = 0.88
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 9 EHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEEL 66
E K + +F+I FTKE + KC L M + ++ +EE E D E++
Sbjct: 321 EEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKV 378
>pdb|1ETE|A Chain A, Crystal Structure Of The Flt3 Ligand
pdb|1ETE|B Chain B, Crystal Structure Of The Flt3 Ligand
pdb|1ETE|C Chain C, Crystal Structure Of The Flt3 Ligand
pdb|1ETE|D Chain D, Crystal Structure Of The Flt3 Ligand
Length = 134
Score = 26.9 bits (58), Expect = 1.1
Identities = 13/66 (19%), Positives = 34/66 (50%), Gaps = 1/66 (1%)
Query: 60 KENQEELIKNIQTSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQ 119
+E + L+++ ++A N + +++ W + +R + +LK + K+Q + +NT+
Sbjct: 20 RELSDYLLQDYPVTVASNLQDDELCGGLWRLVLAQRWMERLKTVAGSKMQ-GLLERVNTE 78
Query: 120 LESFKK 125
+ K
Sbjct: 79 IHFVTK 84
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 26.6 bits (57), Expect = 1.5
Identities = 21/89 (23%), Positives = 41/89 (45%), Gaps = 8/89 (8%)
Query: 77 NQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLE-SFKKDELDLSSVFE 135
N L + E+W+ K+ + +LP+ +I+ I + T +E ++ DE + +
Sbjct: 344 NHTLMPEALERWDVKLVKGLLPRHMQII-----NEINTRFKTLVEKTWPGDEKVWAKLAV 398
Query: 136 IQRKNTQIAYRLAIGGLI--GIIALSSQI 162
+ K +A +GG G+ AL S +
Sbjct: 399 VHDKQVHMANLCVVGGFAVNGVAALHSDL 427
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 26.6 bits (57), Expect = 1.5
Identities = 21/89 (23%), Positives = 41/89 (45%), Gaps = 8/89 (8%)
Query: 77 NQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLE-SFKKDELDLSSVFE 135
N L + E+W+ K+ + +LP+ +I+ I + T +E ++ DE + +
Sbjct: 344 NHTLMPEALERWDVKLVKGLLPRHMQII-----NEINTRFKTLVEKTWPGDEKVWAKLAV 398
Query: 136 IQRKNTQIAYRLAIGGLI--GIIALSSQI 162
+ K +A +GG G+ AL S +
Sbjct: 399 VHDKQVHMANLCVVGGFAVNGVAALHSDL 427
>pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
Length = 796
Score = 26.6 bits (57), Expect = 1.5
Identities = 21/89 (23%), Positives = 41/89 (45%), Gaps = 8/89 (8%)
Query: 77 NQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLE-SFKKDELDLSSVFE 135
N L + E+W+ K+ + +LP+ +I+ I + T +E ++ DE + +
Sbjct: 344 NHTLMPEALERWDVKLVKGLLPRHMQII-----NEINTRFKTLVEKTWPGDEKVWAKLAV 398
Query: 136 IQRKNTQIAYRLAIGGLI--GIIALSSQI 162
+ K +A +GG G+ AL S +
Sbjct: 399 VHDKQVHMANLCVVGGFAVNGVAALHSDL 427
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 26.6 bits (57), Expect = 1.5
Identities = 21/89 (23%), Positives = 41/89 (45%), Gaps = 8/89 (8%)
Query: 77 NQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLE-SFKKDELDLSSVFE 135
N L + E+W+ K+ + +LP+ +I+ I + T +E ++ DE + +
Sbjct: 345 NHTLMPEALERWDVKLVKGLLPRHMQII-----NEINTRFKTLVEKTWPGDEKVWAKLAV 399
Query: 136 IQRKNTQIAYRLAIGGLI--GIIALSSQI 162
+ K +A +GG G+ AL S +
Sbjct: 400 VHDKQVHMANLCVVGGFAVNGVAALHSDL 428
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 25.8 bits (55), Expect = 2.5
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 44 EEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQ--ELEKISFEKWENKIQERVL---- 97
EE+E++QQ + ++ ++ +L + ++ A Q +LEK++ + K+++ +L
Sbjct: 938 EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997
Query: 98 PKLKRIVTHKLQESITSSINTQLESFKKDELDLSSV 133
K KL E S + T L ++ +L+ +
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 25.4 bits (54), Expect = 3.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 41 MFLEEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISF 85
+F EE+E+ QQE + + +KE +L + ++S K E F
Sbjct: 173 LFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPF 217
>pdb|1MIU|A Chain A, Structure Of A Brca2-Dss1 Complex
Length = 738
Score = 25.4 bits (54), Expect = 3.3
Identities = 28/129 (21%), Positives = 53/129 (40%), Gaps = 4/129 (3%)
Query: 13 ELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQD-TKENQEELIKNIQ 71
E E E F + K+ F + F + +E Q L + T++ L +
Sbjct: 388 EREEEKEALRFAEAQQKKLEALFTKVHTEFKDHEEDTTQRCVLSRTLTRQQVHALQDGAE 447
Query: 72 TSIAKNQELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLESFKKDE---L 128
A + E ++ Q R L ++++ K Q I S LES +K+E
Sbjct: 448 LYAAVQYASDPDHLEACFSEEQLRALNNYRQMLNDKKQARIQSEFRKALESAEKEEGLSR 507
Query: 129 DLSSVFEIQ 137
D+++V++++
Sbjct: 508 DVTTVWKLR 516
>pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 25.4 bits (54), Expect = 3.3
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 62 NQEELIKNIQTSIAKNQ--ELEKISFEKWENKIQER--VLPKLKRIVTHKLQESITSSIN 117
N E++ NI + +Q E + ++ NK Q P RI + + +IN
Sbjct: 109 NTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAIN 168
Query: 118 TQLESFKKDELDLSSVFEIQRKNTQIAYRLAIG 150
E F++ ++ + ++ R Q A + +G
Sbjct: 169 QLREGFERKAVEFQDILKMGRTQLQDAVPMTLG 201
>pdb|1JE1|C Chain C, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JDV|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JDV|F Chain F, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JDS|C Chain C, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JE1|F Chain F, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JDU|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JPV|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With So4
pdb|1JE1|A Chain A, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JPV|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With So4
pdb|1JPV|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With So4
pdb|1JE1|B Chain B, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JE1|D Chain D, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JDT|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Mta And Sulfate Ion
pdb|1JDT|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Mta And Sulfate Ion
pdb|1JDU|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JDS|F Chain F, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JE1|E Chain E, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JDU|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JP7|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JP7|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JE0|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Phosphate And Tris Molecule
pdb|1JP7|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JDV|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JDV|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JDV|D Chain D, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JDV|E Chain E, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JE0|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Phosphate And Tris Molecule
pdb|1JE0|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Phosphate And Tris Molecule
pdb|1JDS|A Chain A, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JDS|B Chain B, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JDS|D Chain D, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JDS|E Chain E, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JDT|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Mta And Sulfate Ion
pdb|1JDZ|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase With Formycin B And Sulfate Ion
pdb|1JDZ|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase With Formycin B And Sulfate Ion
pdb|1JDZ|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase With Formycin B And Sulfate Ion
Length = 236
Score = 25.0 bits (53), Expect = 4.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 13 ELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQE 47
EL N + SF+K N+K Y F S + + E++E
Sbjct: 133 ELTNKL-VTSFSKRNLKYYVGNVFSSDAFYAEDEE 166
>pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
pdb|1IK9|B Chain B, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
Length = 213
Score = 24.3 bits (51), Expect = 7.4
Identities = 22/82 (26%), Positives = 37/82 (44%), Gaps = 10/82 (12%)
Query: 9 EHLKELENSFEIGSFTKENIKEYA----KCFFMSLSMFLEEQEKNQ----QEEFLEQDTK 60
++LK++ SF +GSF E ++ A + +L E Q KN+ + E L +D
Sbjct: 99 KNLKDV--SFRLGSFNLEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWN 156
Query: 61 ENQEELIKNIQTSIAKNQELEK 82
+ Q K + A +L K
Sbjct: 157 DVQGRFEKAVSAKEALETDLYK 178
>pdb|1FU1|B Chain B, Crystal Structure Of Human Xrcc4
pdb|1FU1|A Chain A, Crystal Structure Of Human Xrcc4
Length = 203
Score = 24.3 bits (51), Expect = 7.4
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 9 EHLKELENSFEIGSFTKENIKEYAKCFFMSLSMFLEEQEKNQQEEFLEQDTKENQEEL 66
++LK++ SF +GSF E ++ A+ + L+ +NQ + E KEN+ L
Sbjct: 99 KNLKDV--SFRLGSFNLEKVENPAEVIRELIXYXLDTTAENQAKN--EHLQKENERLL 152
>pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 109
Score = 23.9 bits (50), Expect = 9.7
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 45 EQEKNQQEEFLEQDTKENQE-ELIK---NIQTSIAKNQELEKISFEKWENKIQERVLPKL 100
E + N+ ++ LE+ ++ + E+ K NI +AK++ E++ + +++E+ + +
Sbjct: 27 EXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQ 86
Query: 101 KRIVTHKLQE 110
+ V KLQE
Sbjct: 87 EERVXKKLQE 96
>pdb|1RFB|A Chain A, Interferon Gamma (Bovine, Recombinant)
pdb|1RFB|B Chain B, Interferon Gamma (Bovine, Recombinant)
Length = 119
Score = 23.9 bits (50), Expect = 9.7
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 65 ELIKNIQTSIAKN---QELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLE 121
E++KN + K ++ F+ +EN +V+ + I+ + + + + +LE
Sbjct: 31 EILKNWKDESDKKIIQSQIVSFYFKLFENLKDNQVIQRSMDIIKQDMFQKFLNGSSEKLE 90
Query: 122 SFKKDELDLSSVFEIQRK 139
FKK +IQRK
Sbjct: 91 DFKKLIQIPVDDLQIQRK 108
>pdb|1D9C|A Chain A, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9G|A Chain A, Bovine Interferon-Gamma At 2.9 Angstroms
pdb|1D9C|B Chain B, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9G|B Chain B, Bovine Interferon-Gamma At 2.9 Angstroms
Length = 121
Score = 23.9 bits (50), Expect = 9.7
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 65 ELIKNIQTSIAKN---QELEKISFEKWENKIQERVLPKLKRIVTHKLQESITSSINTQLE 121
E++KN + K ++ F+ +EN +V+ + I+ + + + + +LE
Sbjct: 31 EILKNWKDESDKKIIQSQIVSFYFKLFENLKDNQVIQRSMDIIKQDMFQKFLNGSSEKLE 90
Query: 122 SFKKDELDLSSVFEIQRK 139
FKK +IQRK
Sbjct: 91 DFKKLIQIPVDDLQIQRK 108
>pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 107
Score = 23.9 bits (50), Expect = 9.7
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 45 EQEKNQQEEFLEQDTKENQE-ELIK---NIQTSIAKNQELEKISFEKWENKIQERVLPKL 100
E + N+ ++ LE+ ++ + E+ K NI +AK++ E++ + +++E+ + +
Sbjct: 28 EXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQ 87
Query: 101 KRIVTHKLQE 110
+ V KLQE
Sbjct: 88 EERVXKKLQE 97
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
Length = 416
Score = 23.9 bits (50), Expect = 9.7
Identities = 13/42 (30%), Positives = 22/42 (51%)
Query: 44 EEQEKNQQEEFLEQDTKENQEELIKNIQTSIAKNQELEKISF 85
EE+E+ QQE + + +KE +L + ++S K E F
Sbjct: 176 EEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPF 217
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.129 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 762,600
Number of Sequences: 13198
Number of extensions: 25978
Number of successful extensions: 117
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 23
length of query: 162
length of database: 2,899,336
effective HSP length: 81
effective length of query: 81
effective length of database: 1,830,298
effective search space: 148254138
effective search space used: 148254138
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)