BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645094|ref|NP_207264.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(255 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3WRP| trp Aporepressor 29 0.46
pdb|2WRP|R Chain R, E Coli Trp Repressor, Orthorhombic Crys... 28 0.79
pdb|1TRO|A Chain A, Trp Repressor Complex With Operator >gi... 28 1.0
pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Sub... 28 1.3
pdb|1TRR|A Chain A, Trp RepressorOPERATOR HALF-Site Tandem ... 28 1.3
pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin ... 27 2.3
pdb|1RCS|A Chain A, Nmr Study Of Trp Repressor-Operator Dna... 27 2.3
pdb|1JHG|A Chain A, Trp Repressor Mutant V58i 27 3.0
pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kina... 27 3.0
pdb|1LKI| Leukemia Inhibitory Factor (Lif) 26 5.1
pdb|1AIN| Annexin I 25 6.7
>pdb|3WRP| trp Aporepressor
Length = 108
Score = 29.3 bits (64), Expect = 0.46
Identities = 26/97 (26%), Positives = 42/97 (42%), Gaps = 6/97 (6%)
Query: 46 LAQSSPLDKFKQTQTGAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSE----QQNLA 101
+AQ SP Q + L+F+D+ KNA N L ++ + P E + +
Sbjct: 1 MAQQSPYSAAMAEQR--HQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIV 58
Query: 102 KELLNEPVDKKENFESLCQEIADHTHGEYTKRLKLVE 138
+ELL + ++E L IA T G + + VE
Sbjct: 59 EELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVE 95
>pdb|2WRP|R Chain R, E Coli Trp Repressor, Orthorhombic Crystal Form
pdb|1WRP|R Chain R, trp Repressor (Trigonal Form)
Length = 107
Score = 28.5 bits (62), Expect = 0.79
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 47 AQSSPLDKFKQTQTGAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSE----QQNLAK 102
AQ SP Q + L+F+D+ KNA N L ++ + P E + + +
Sbjct: 1 AQQSPYSAAMAEQR--HQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVE 58
Query: 103 ELLNEPVDKKENFESLCQEIADHTHGEYTKRLKLVE 138
ELL + ++E L IA T G + + VE
Sbjct: 59 ELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVE 94
>pdb|1TRO|A Chain A, Trp Repressor Complex With Operator
pdb|1TRO|G Chain G, Trp Repressor Complex With Operator
pdb|1TRO|C Chain C, Trp Repressor Complex With Operator
pdb|1TRO|E Chain E, Trp Repressor Complex With Operator
Length = 108
Score = 28.1 bits (61), Expect = 1.0
Identities = 25/97 (25%), Positives = 42/97 (42%), Gaps = 6/97 (6%)
Query: 46 LAQSSPLDKFKQTQTGAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSE----QQNLA 101
+AQ SP + + L+F+D+ KNA N L ++ + P E + +
Sbjct: 1 MAQQSPYSAAMAEER--HQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIV 58
Query: 102 KELLNEPVDKKENFESLCQEIADHTHGEYTKRLKLVE 138
+ELL + ++E L IA T G + + VE
Sbjct: 59 EELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVE 95
>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The
V-Type Atpase Of Saccharomyces Cerevisiae
Length = 480
Score = 27.7 bits (60), Expect = 1.3
Identities = 29/104 (27%), Positives = 46/104 (43%), Gaps = 15/104 (14%)
Query: 18 NTLKEYLKNPLNPKTKTEEYDLKNDPYLLAQSSP----------LDKFKQTQTGAYMRLL 67
+ LKE L+N T +EY + D LL S P +D+FK+ + +L+
Sbjct: 342 SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLI 401
Query: 68 KFLDIQ-KNALDNALRTLFIHELEQPLNSEQQNLAKELLNEPVD 110
+ L + +N NA + I ++ LN ELL E +D
Sbjct: 402 ELLQAKVRNGDVNAKQEKII--IQVALNDITH--VVELLPESID 441
>pdb|1TRR|A Chain A, Trp RepressorOPERATOR HALF-Site Tandem Complex
pdb|1TRR|B Chain B, Trp RepressorOPERATOR HALF-Site Tandem Complex
pdb|1TRR|D Chain D, Trp RepressorOPERATOR HALF-Site Tandem Complex
pdb|1TRR|E Chain E, Trp RepressorOPERATOR HALF-Site Tandem Complex
pdb|1TRR|G Chain G, Trp RepressorOPERATOR HALF-Site Tandem Complex
pdb|1TRR|H Chain H, Trp RepressorOPERATOR HALF-Site Tandem Complex
pdb|1TRR|J Chain J, Trp RepressorOPERATOR HALF-Site Tandem Complex
pdb|1TRR|K Chain K, Trp RepressorOPERATOR HALF-Site Tandem Complex
Length = 107
Score = 27.7 bits (60), Expect = 1.3
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 47 AQSSPLDKFKQTQTGAYMRLLKFLDIQKNALDNALRTLFIHELEQPLNSE----QQNLAK 102
AQ SP Q + L+F+D+ KNA N L ++ + P E + + +
Sbjct: 1 AQQSPYSAAMAEQR--HEEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVE 58
Query: 103 ELLNEPVDKKENFESLCQEIADHTHGEYTKRLKLVE 138
ELL + ++E L IA T G + + VE
Sbjct: 59 ELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVE 94
>pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin 1
pdb|1HM6|B Chain B, X-Ray Structure Of Full-Length Annexin 1
Length = 346
Score = 26.9 bits (58), Expect = 2.3
Identities = 53/205 (25%), Positives = 82/205 (39%), Gaps = 35/205 (17%)
Query: 28 LNPKTKTEEYDLKNDPYLLAQSSPLDK-FKQTQTG----AYMRLLKF-LDIQKNALDNAL 81
L +T + +K YL + PLD+ K+ TG + LLK + L A+
Sbjct: 69 LTKRTNAQRQQIKA-AYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFDADELRAAM 127
Query: 82 RTLFIHE--LEQPLNSEQQNLAKELLNEPVDKKENFESLCQEIADHTHGEYTKRLKLVEF 139
+ L E L + L S +E+ V K+E L ++I T G+Y K
Sbjct: 128 KGLGTDEDTLNEILASRTNREIREI--NRVYKEELKRDLAKDITSDTSGDYQK------- 178
Query: 140 LMLLAYADGILDSKEKELFLDVGVFLQIDNQDFNELYDNFER--------FNAIEIPMSL 191
LL+ A G D E D+ + + + D LY+ ER F I S
Sbjct: 179 -ALLSLAKG--DRSE-----DLAINDDLADTDARALYEAGERRKGTDLNVFITILTTRSY 230
Query: 192 EEAKSLFEIQTHTTKQDLEKKALDL 216
+ +F+ + +K D+ K LDL
Sbjct: 231 PHLRRVFQKYSKYSKHDM-NKVLDL 254
Score = 25.4 bits (54), Expect = 6.7
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 117 SLCQEIADHTHGEYTKRL 134
SLCQ I D T G+Y K L
Sbjct: 322 SLCQAILDETKGDYEKIL 339
>pdb|1RCS|A Chain A, Nmr Study Of Trp Repressor-Operator Dna Complex
pdb|1RCS|B Chain B, Nmr Study Of Trp Repressor-Operator Dna Complex
pdb|1WRS|R Chain R, Nmr Study Of Holo Trp Repressor
pdb|1WRS|S Chain S, Nmr Study Of Holo Trp Repressor
pdb|1WRT|R Chain R, Nmr Study Of Apo Trp Repressor
pdb|1WRT|S Chain S, Nmr Study Of Apo Trp Repressor
Length = 105
Score = 26.9 bits (58), Expect = 2.3
Identities = 21/76 (27%), Positives = 35/76 (45%), Gaps = 4/76 (5%)
Query: 67 LKFLDIQKNALDNALRTLFIHELEQPLNSE----QQNLAKELLNEPVDKKENFESLCQEI 122
L+F+D+ KNA N L ++ + P E + + +ELL + ++E L I
Sbjct: 17 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 76
Query: 123 ADHTHGEYTKRLKLVE 138
A T G + + VE
Sbjct: 77 ATITRGSNSLKAAPVE 92
>pdb|1JHG|A Chain A, Trp Repressor Mutant V58i
Length = 101
Score = 26.6 bits (57), Expect = 3.0
Identities = 21/76 (27%), Positives = 35/76 (45%), Gaps = 4/76 (5%)
Query: 67 LKFLDIQKNALDNALRTLFIHELEQPLNSE----QQNLAKELLNEPVDKKENFESLCQEI 122
L+F+D+ KNA N L ++ + P E + + +ELL + ++E L I
Sbjct: 13 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGI 72
Query: 123 ADHTHGEYTKRLKLVE 138
A T G + + VE
Sbjct: 73 ATITRGSNSLKAAPVE 88
>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|1JWH|B Chain B, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
Length = 337
Score = 26.6 bits (57), Expect = 3.0
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 132 KRLKLVEFLM----LLAYADGILDSKEKELFLDVGVFLQIDNQDFNELYDNFE----RFN 183
+ +K++E L ++ AD + D + L VF ++N DF +LY RF
Sbjct: 80 REIKILENLRGGPNIITLADIVKDPVSRTPAL---VFEHVNNTDFKQLYQTLTDYDIRFY 136
Query: 184 AIEIPMSLEEAKSL----FEIQTHTTKQDLEKKALDL----SAPYYH 222
EI +L+ S+ +++ H D E + L L A +YH
Sbjct: 137 MYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH 183
>pdb|1LKI| Leukemia Inhibitory Factor (Lif)
Length = 180
Score = 25.8 bits (55), Expect = 5.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 114 NFESLCQ-EIADHT--HGEYTKRLKLVEFLMLLAYADGILD--SKEKELFLDVGVFLQI 167
N E LC + D HG T++ KLVE ++AY L ++++++ V LQ+
Sbjct: 55 NVEKLCAPNMTDFPSFHGNGTEKTKLVELYRMVAYLSASLTNITRDQKVLNPTAVSLQV 113
>pdb|1AIN| Annexin I
Length = 314
Score = 25.4 bits (54), Expect = 6.7
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 117 SLCQEIADHTHGEYTKRL 134
SLCQ I D T G+Y K L
Sbjct: 290 SLCQAILDETKGDYEKIL 307
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,385,431
Number of Sequences: 13198
Number of extensions: 54784
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 12
length of query: 255
length of database: 2,899,336
effective HSP length: 86
effective length of query: 169
effective length of database: 1,764,308
effective search space: 298168052
effective search space used: 298168052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)