BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645095|ref|NP_207265.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(115 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 28 0.26
pdb|1AGP| C-H-Ras P21 Protein Mutant With Gly 12 Replaced... 26 1.3
pdb|221P| H-Ras P21 Protein Mutant With Asp 38 Replaced B... 26 1.3
pdb|721P| H-Ras P21 Protein Mutant With Gln 61 Replaced B... 26 1.3
pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Pro... 26 1.3
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gpp... 26 1.3
pdb|621P| H-Ras P21 Protein Mutant With Gln 61 Replaced B... 26 1.3
pdb|521P| H-Ras P21 Protein Mutant With Gly 12 Replaced B... 26 1.3
pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp... 26 1.3
pdb|6Q21|A Chain A, c-H-Ras p21 Protein Catalytic Domain Co... 26 1.3
pdb|2Q21| c-H-Ras p21 Protein Catalytic Domain (Mutant Wi... 26 1.3
pdb|4Q21| c-H-Ras p21 Protein Catalytic Domain Complex Wi... 26 1.3
pdb|821P| C-H-Ras P21 Protein (Residues 1 - 166) Mutant W... 26 1.3
pdb|421P| H-Ras P21 Protein Mutant With Gly 12 Replaced B... 26 1.3
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 ... 26 1.3
pdb|1HE8|B Chain B, Ras G12v - Pi 3-Kinase Gamma Complex >g... 26 1.3
pdb|1QSR|A Chain A, Crystal Structure Of Tetrahymena Gcn5 W... 25 1.7
pdb|1QST|A Chain A, Crystal Structure Of Tetrahymena Gcn5 25 1.7
pdb|1JAH| H-Ras P21 Protein Mutant G12p, Complexed With G... 25 1.7
pdb|1M1D|A Chain A, Tetrahymena Gcn5 With Bound Bisubstrate... 25 1.7
pdb|5GCN|A Chain A, Catalytic Domain Of Tetrahymena Gcn5 Hi... 25 1.7
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 25 2.2
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 25 2.8
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 25 2.8
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 24 3.7
pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycini... 24 4.8
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts >gi|11514... 23 8.2
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 23 8.2
pdb|1GEB|A Chain A, X-Ray Crystal Structure And Catalytic P... 23 8.2
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 28.1 bits (61), Expect = 0.26
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 62 EKREEYIERLKKNHERKMILQD-----KQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
E E + K E + IL + +++EE+ + QA+K++ +Q DL+EQ+++
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966
Score = 24.6 bits (52), Expect = 2.8
Identities = 13/42 (30%), Positives = 24/42 (56%), Gaps = 2/42 (4%)
Query: 71 LKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMK 112
LKK E + + D Q E + +A + + +QK+DL E+++
Sbjct: 1115 LKKIRELESHISDLQ--EDLESEKAARNKAEKQKRDLSEELE 1154
Score = 23.5 bits (49), Expect = 6.3
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 78 KMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKKYS 115
K+ Q+++ + + Q KER+ + + +LKE +K++
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHT 888
Score = 23.5 bits (49), Expect = 6.3
Identities = 12/55 (21%), Positives = 32/55 (57%), Gaps = 4/55 (7%)
Query: 59 QDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
++ E+R + ++ KK +++M+ ++Q EE+ +A +++ +K ++KK
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEE----EAARQKLQLEKVTADGKIKK 987
>pdb|1AGP| C-H-Ras P21 Protein Mutant With Gly 12 Replaced By Asp (G12d)
Complexed With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|221P| H-Ras P21 Protein Mutant With Asp 38 Replaced By Glu (D38e)
Complex With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|721P| H-Ras P21 Protein Mutant With Gln 61 Replaced By Leu (Q61l)
Complex With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-Interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-Interacting Domain Of Ralgds
Length = 167
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|5P21| c-H-Ras p21 Protein (Amino Acids 1 - 166) Complex With
Guanosine-5'-(Beta,Gamma-Imido) Triphosphate (GppNp)
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1GNR| C-H-Ras P21 Protein Complexed With P3-1[r]-(2-Nitrophenyl)-
Ethyl-Guanosine-5'-Triphosphate (R-Diastereomer)
(Residues 1 - 166)
pdb|1GNQ| C-H-Ras P21 Protein Complexed With P3-1[s]-(2-Nitrophenyl)-
Ethyl-Guanosine-5'-Triphosphate (S-Diastereomer)
(Residues 1 - 166)
pdb|1GNP| C-H-Ras P21 Protein Complexed With 3'-O-(N-Methyl-
Anthraniloyl-2'-Deoxyguanosine-5'-[beta,Gamma-Imido]-
Triphosphate (Residues 1 - 166)
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CRP| C-H-Ras P21 Protein (Catalytic Domain, Residues 1 - 166) Complexed
With Gdp And Mg (Nmr, First 20 Structures)
pdb|1CRQ| C-H-Ras P21 Protein (Catalytic Domain, Residues 1 - 166) Complexed
With Gdp And Mg (Nmr, Restrained Minimized Average)
pdb|1CRR| C-H-Ras P21 Protein (Catalytic Domain, Residues 1 - 166) Complexed
With Gdp And Mg (Nmr, Final 20 Structures)
pdb|121P| H-Ras P21 Protein Complex With Guanosine-5'-[b,G-Methylene]
Triphosphate
pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|621P| H-Ras P21 Protein Mutant With Gln 61 Replaced By His (Q61h)
Complex With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|521P| H-Ras P21 Protein Mutant With Gly 12 Replaced By Val (G12v)
Complex With Guanosine Triphosphate
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|6Q21|A Chain A, c-H-Ras p21 Protein Catalytic Domain Complex With GDPCP
pdb|6Q21|B Chain B, c-H-Ras p21 Protein Catalytic Domain Complex With GDPCP
pdb|6Q21|C Chain C, c-H-Ras p21 Protein Catalytic Domain Complex With GDPCP
pdb|6Q21|D Chain D, c-H-Ras p21 Protein Catalytic Domain Complex With GDPCP
pdb|1Q21| c-H-Ras p21 Protein Catalytic Domain Complex With GDP
pdb|1AA9| Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average Structure
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
Length = 171
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|2Q21| c-H-Ras p21 Protein Catalytic Domain (Mutant With Gly 12 Replaced
By Val) (G12V) Complex With GDP
Length = 171
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|4Q21| c-H-Ras p21 Protein Catalytic Domain Complex With GDP
Length = 189
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|821P| C-H-Ras P21 Protein (Residues 1 - 166) Mutant With Gly 12 Replaced
By Pro (G12p) Complex With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1JAI| H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'-[beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1PLL| C-H-Ras P21 Protein Mutant With Gly 12 Replaced By Pro (G12p)
Complexed With Guanosine-Diphosphate
pdb|1PLJ| C-H-Ras P21 Protein Mutant With Gly 12 Replaced By Pro (G12p)
Complexed With P3-1-(2-Nitrophenyl)ethyl-
Guanosine-5'-(B,G-Imido)-Triphosphate
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|421P| H-Ras P21 Protein Mutant With Gly 12 Replaced By Arg (G12r)
Complex With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|1HE8|B Chain B, Ras G12v - Pi 3-Kinase Gamma Complex
pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
Length = 166
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAARTVESRQAQDL 133
>pdb|1QSR|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Acetyl-
Coenzyme A
pdb|1QSN|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound
Coenzyme A And Histone H3 Peptide
Length = 162
Score = 25.4 bits (54), Expect = 1.7
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 57 SFQDPEKREEYIERL--KKNHERKMILQDKQK 86
S Q P+ +EYI +L ++HE +IL++KQK
Sbjct: 26 SRQLPKMPKEYIVKLVFDRHHESMVILKNKQK 57
>pdb|1QST|A Chain A, Crystal Structure Of Tetrahymena Gcn5
Length = 160
Score = 25.4 bits (54), Expect = 1.7
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 57 SFQDPEKREEYIERL--KKNHERKMILQDKQK 86
S Q P+ +EYI +L ++HE +IL++KQK
Sbjct: 26 SRQLPKMPKEYIVKLVFDRHHESMVILKNKQK 57
>pdb|1JAH| H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'-[beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK| C-H-Ras P21 Protein Mutant With Gly 12 Replaced By Pro (G12p)
Complexed With Guanosine-Triphosphate
Length = 166
Score = 25.4 bits (54), Expect = 1.7
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 57 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDL 107
SF+D + E I+R+K + + M+L + + A + ESRQ QDL
Sbjct: 89 SFEDIHQYREQIKRVKDSDDVPMVLVGNKCD------LAGRTVESRQAQDL 133
>pdb|1M1D|A Chain A, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1M1D|C Chain C, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
Length = 163
Score = 25.4 bits (54), Expect = 1.7
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 57 SFQDPEKREEYIERL--KKNHERKMILQDKQK 86
S Q P+ +EYI +L ++HE +IL++KQK
Sbjct: 27 SRQLPKMPKEYIVKLVFDRHHESMVILKNKQK 58
>pdb|5GCN|A Chain A, Catalytic Domain Of Tetrahymena Gcn5 Histone
Acetyltransferase In Complex With Coenzyme A
Length = 166
Score = 25.4 bits (54), Expect = 1.7
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 57 SFQDPEKREEYIERL--KKNHERKMILQDKQK 86
S Q P+ +EYI +L ++HE +IL++KQK
Sbjct: 30 SRQLPKMPKEYIVKLVFDRHHESMVILKNKQK 61
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 25.0 bits (53), Expect = 2.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 69 ERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQ 103
E+ +K ER M+ +K+K E + K ERE +
Sbjct: 312 EKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 24.6 bits (52), Expect = 2.8
Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 2/49 (4%)
Query: 65 EEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQK--QDLKEQM 111
E+Y ++ K E +L DK KE + R A++ +K DL++++
Sbjct: 212 EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 24.6 bits (52), Expect = 2.8
Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 2/49 (4%)
Query: 65 EEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQK--QDLKEQM 111
E+Y ++ K E +L DK KE + R A++ +K DL++++
Sbjct: 212 EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 24.3 bits (51), Expect = 3.7
Identities = 12/41 (29%), Positives = 23/41 (55%), Gaps = 10/41 (24%)
Query: 64 REEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQK 104
+++ +E+L K HE EE+ + + KKE+E ++K
Sbjct: 229 KQKEVEQLIKKHE----------EEEAKAEREKKEKEQKEK 259
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 23.9 bits (50), Expect = 4.8
Identities = 16/86 (18%), Positives = 37/86 (42%), Gaps = 19/86 (22%)
Query: 25 GGLWYAFNGEGSEIVAIGIFVLILFVFFIRPVSFQDPEKREEYIERLKKNHERKMILQDK 84
G W+ +N E + +VA+ I D E ++++ R+ L
Sbjct: 128 GVAWWMYNNEDTPVVAVSII---------------DTNSLENQLDQM----PRRFYLAGN 168
Query: 85 QKEEQMRLYQAKKERESRQKQDLKEQ 110
Q++E ++ Q + +S++ + +E+
Sbjct: 169 QEQEFLKYQQEQGGHQSQKGKHQQEE 194
>pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
Length = 649
Score = 23.1 bits (48), Expect = 8.2
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 62 EKREEYIERLKKNHERKMILQDKQ-------KEEQMRLYQAK---KERESRQKQDLKEQM 111
E Y ER+ K + L+D+Q KE++ +Y+ + + RE +++E+
Sbjct: 335 EVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERA 394
Query: 112 KK 113
K+
Sbjct: 395 KR 396
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 23.1 bits (48), Expect = 8.2
Identities = 11/42 (26%), Positives = 24/42 (56%)
Query: 65 EEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQD 106
+E ++ +K E+ Q K +E+Q +A +E+E + +Q+
Sbjct: 177 QEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQE 218
>pdb|1GEB|A Chain A, X-Ray Crystal Structure And Catalytic Properties Of
Thr252ile Mutant Of Cytochrome P450cam
Length = 415
Score = 23.1 bits (48), Expect = 8.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 42 GIFVLILFVFFIRPVSFQDPEKREEYIER 70
G+ +++ F+ F + PE R+E IER
Sbjct: 250 GLDIVVNFLSFSMEFLAKSPEHRQELIER 278
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.140 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,652
Number of Sequences: 13198
Number of extensions: 20104
Number of successful extensions: 109
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 33
length of query: 115
length of database: 2,899,336
effective HSP length: 76
effective length of query: 39
effective length of database: 1,896,288
effective search space: 73955232
effective search space used: 73955232
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)