BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645096|ref|NP_207266.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(495 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DXH|A Chain A, Catabolic Ornithine Carbamoyltransferas... 29 1.4
pdb|1ORT|A Chain A, Ornithine Transcarbamoylase From Pseudo... 28 1.8
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein ... 27 4.0
pdb|1YED|A Chain A, Structure Of A Catalytic Antibody Igg2a... 27 5.2
pdb|1YEJ|L Chain L, Catalytic Antibody Complex >gi|4389133|... 27 6.8
pdb|1YEC|L Chain L, Structure Of A Catalytic Antibody Igg2a... 27 6.8
>pdb|1DXH|A Chain A, Catabolic Ornithine Carbamoyltransferase From Pseudomonas
Aeruginosa
Length = 335
Score = 28.9 bits (63), Expect = 1.4
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 31 QEDQYLLDLLKQLKGVSY--NENIALKINQIA-VFEDAKVSDLVAFFSKEW-------VL 80
+E +YLLDL + LK Y E LK IA +FE AF + +
Sbjct: 18 RELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYI 77
Query: 81 DPLSKRYALKDLMIDEKAVLKNYEDFFKQIPYITKGEKEELEKFIQINFINPQTN 135
DP S + K+ M D VL D + + + EEL KF + N T+
Sbjct: 78 DPNSSQIGHKESMKDTARVLGRMYDAIEYRGF-KQEIVEELAKFAGVPVFNGLTD 131
>pdb|1ORT|A Chain A, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|B Chain B, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|C Chain C, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|D Chain D, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|E Chain E, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|F Chain F, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|G Chain G, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|H Chain H, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|I Chain I, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|J Chain J, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|K Chain K, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|L Chain L, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
Length = 335
Score = 28.5 bits (62), Expect = 1.8
Identities = 36/121 (29%), Positives = 48/121 (38%), Gaps = 23/121 (19%)
Query: 31 QEDQYLLDLLKQLKGVSY--NENIALKINQIA-VFEDAKVSDLVAFFSKEW-------VL 80
+E +YLLDL + LK Y E LK IA +FE AF + +
Sbjct: 18 RELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYI 77
Query: 81 DPLSKRYALKDLMIDEKAVLK------NYEDFFKQIPYITKGEKEELEKFIQINFINPQT 134
DP S + K+ M D VL Y F ++I EEL KF + N T
Sbjct: 78 DPNSSQIGHKESMKDTARVLGRMYDAIGYRGFKQEI-------VEELAKFAGVPVFNGLT 130
Query: 135 N 135
+
Sbjct: 131 D 131
>pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
Length = 279
Score = 27.3 bits (59), Expect = 4.0
Identities = 26/77 (33%), Positives = 36/77 (45%), Gaps = 15/77 (19%)
Query: 287 LTASAYNLALAKANGVSLIFCE-------EDAYLNILHAKEVLDNNPEIINSVNEKLKKY 339
L A AYN A+ + L+ E ED Y N H+ + D N E VNE KK
Sbjct: 140 LNAGAYNKAIQER----LVQAEYWHDPIREDIYRN--HSIFLADINQE--RGVNESYKKN 191
Query: 340 QLVYEKGVEVVYLNEWV 356
+ +K V V +LN+ +
Sbjct: 192 LMALKKFVMVKFLNDTI 208
>pdb|1YED|A Chain A, Structure Of A Catalytic Antibody Igg2a Fab Fragment
(D2.4)
pdb|1YED|L Chain L, Structure Of A Catalytic Antibody Igg2a Fab Fragment
(D2.4)
Length = 219
Score = 26.9 bits (58), Expect = 5.2
Identities = 11/27 (40%), Positives = 18/27 (65%)
Query: 146 YVKWLMKRYPTERNRLLEMISQPESGV 172
Y+ WL++R RL+ ++S+ ESGV
Sbjct: 37 YLNWLLQRPGQSPKRLIYLVSKLESGV 63
>pdb|1YEJ|L Chain L, Catalytic Antibody Complex
pdb|1YEI|L Chain L, Catalytic Antibody D2.3 Complex
pdb|1KN2|L Chain L, Catalytic Antibody D2.3 Complex
pdb|1KN4|L Chain L, Catalytic Antibody D2.3 Complex
pdb|1YEK|L Chain L, Catalytic Antibody D2.3 Complex
Length = 219
Score = 26.6 bits (57), Expect = 6.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 146 YVKWLMKRYPTERNRLLEMISQPESGV 172
Y+ WL++R RL+ ++S+ +SGV
Sbjct: 37 YLNWLLQRPGQSPKRLIHLVSKLDSGV 63
>pdb|1YEC|L Chain L, Structure Of A Catalytic Antibody Igg2a Fab Fragment
(D2.3)
pdb|1YEG|L Chain L, Structure Of Igg2a Fab Fragment (D2.3) Complexed With
Reaction Product
pdb|1YEF|L Chain L, Structure Of Igg2a Fab Fragment (D2.3) Complexed With
Substrate Analogue
pdb|1YEH|L Chain L, Structure Of Igg2a Fab Fragment
Length = 219
Score = 26.6 bits (57), Expect = 6.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 146 YVKWLMKRYPTERNRLLEMISQPESGV 172
Y+ WL++R RL+ ++S+ +SGV
Sbjct: 37 YLNWLLQRPGQSPKRLIHLVSKLDSGV 63
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,032,910
Number of Sequences: 13198
Number of extensions: 133204
Number of successful extensions: 290
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 6
length of query: 495
length of database: 2,899,336
effective HSP length: 92
effective length of query: 403
effective length of database: 1,685,120
effective search space: 679103360
effective search space used: 679103360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)